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Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

With S4 and S12 plays an important role in translational accuracy.By similarity
Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5
Gene namesi
Name:rpsE
Synonyms:rps5
Ordered Locus Names:TT_C1311
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001316202 – 16230S ribosomal protein S5Add BLAST161

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1311.

Structurei

Secondary structure

1162
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 12Combined sources6
Beta strandi18 – 20Combined sources3
Beta strandi23 – 25Combined sources3
Beta strandi28 – 35Combined sources8
Beta strandi37 – 47Combined sources11
Beta strandi48 – 50Combined sources3
Helixi51 – 64Combined sources14
Beta strandi65 – 67Combined sources3
Beta strandi80 – 84Combined sources5
Beta strandi87 – 93Combined sources7
Beta strandi99 – 102Combined sources4
Helixi104 – 112Combined sources9
Beta strandi117 – 124Combined sources8
Helixi128 – 139Combined sources12
Helixi145 – 151Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20E1-162[»]
4V4IX-ray3.71f1-162[»]
4V4JX-ray3.83f1-162[»]
4V63X-ray3.21AE/CE1-162[»]
4V67X-ray3.00AE/CE1-162[»]
4V7PX-ray3.62AE/DE5-155[»]
4V83X-ray3.50AE/CE5-155[»]
4V84X-ray3.40AE/CE5-155[»]
4V9JX-ray3.86AE/CE5-155[»]
4V9KX-ray3.50AE/CE5-155[»]
4V9LX-ray3.50AE/CE5-155[»]
4V9MX-ray4.00AE/CE5-155[»]
4V9NX-ray3.40AE/CE5-155[»]
4V9QX-ray3.40BE/DE5-155[»]
4W29X-ray3.80AE/CE5-155[»]
4XEJX-ray3.80AS05/BS055-155[»]
5J4DX-ray3.10NA/SC1-162[»]
ProteinModelPortaliP62665.
SMRiP62665.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62665.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 70S5 DRBMAdd BLAST64

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.

Sequence similaritiesi

Belongs to the ribosomal protein S5P family.Curated
Contains 1 S5 DRBM domain.Curated

Phylogenomic databases

eggNOGiENOG4108RA9. Bacteria.
COG0098. LUCA.
KOiK02988.
OMAiHKYNASK.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B. 1 hit.
InterProiIPR014720. dsRBD_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62665-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE
60 70 80 90 100
VPLAVQKAGY YARRNMVEVP LQNGTIPHEI EVEFGASKIV LKPAAPGTGV
110 120 130 140 150
IAGAVPRAIL ELAGVTDILT KELGSRNPIN IAYATMEALR QLRTKADVER
160
LRKGEAHAQA QG
Length:162
Mass (Da):17,557
Last modified:January 23, 2007 - v2
Checksum:iBE3367CB619E68D2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81653.1.
RefSeqiWP_008633389.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81653; AAS81653; TT_C1311.
KEGGitth:TT_C1311.
PATRICi23953029. VBITheThe54392_1303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81653.1.
RefSeqiWP_008633389.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20E1-162[»]
4V4IX-ray3.71f1-162[»]
4V4JX-ray3.83f1-162[»]
4V63X-ray3.21AE/CE1-162[»]
4V67X-ray3.00AE/CE1-162[»]
4V7PX-ray3.62AE/DE5-155[»]
4V83X-ray3.50AE/CE5-155[»]
4V84X-ray3.40AE/CE5-155[»]
4V9JX-ray3.86AE/CE5-155[»]
4V9KX-ray3.50AE/CE5-155[»]
4V9LX-ray3.50AE/CE5-155[»]
4V9MX-ray4.00AE/CE5-155[»]
4V9NX-ray3.40AE/CE5-155[»]
4V9QX-ray3.40BE/DE5-155[»]
4W29X-ray3.80AE/CE5-155[»]
4XEJX-ray3.80AS05/BS055-155[»]
5J4DX-ray3.10NA/SC1-162[»]
ProteinModelPortaliP62665.
SMRiP62665.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1311.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81653; AAS81653; TT_C1311.
KEGGitth:TT_C1311.
PATRICi23953029. VBITheThe54392_1303.

Phylogenomic databases

eggNOGiENOG4108RA9. Bacteria.
COG0098. LUCA.
KOiK02988.
OMAiHKYNASK.

Miscellaneous databases

EvolutionaryTraceiP62665.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B. 1 hit.
InterProiIPR014720. dsRBD_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS5_THET2
AccessioniPrimary (citable) accession number: P62665
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.