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P62665

- RS5_THET2

UniProt

P62665 - RS5_THET2

Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 2 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    With S4 and S12 plays an important role in translational accuracy.By similarity
    Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1326-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S5
    Gene namesi
    Name:rpsE
    Synonyms:rps5
    Ordered Locus Names:TT_C1311
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 16216130S ribosomal protein S5PRO_0000131620Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity.By similarity

    Structurei

    Secondary structure

    1
    162
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi7 – 126
    Beta strandi18 – 203
    Beta strandi23 – 253
    Beta strandi28 – 358
    Beta strandi37 – 4711
    Beta strandi48 – 503
    Helixi51 – 6414
    Beta strandi65 – 673
    Beta strandi80 – 845
    Beta strandi87 – 937
    Beta strandi99 – 1024
    Helixi104 – 1129
    Beta strandi117 – 1248
    Helixi128 – 13912
    Helixi145 – 1517

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83f1-162[»]
    3D5AX-ray3.21E1-162[»]
    3D5CX-ray3.21E1-162[»]
    3F1EX-ray3.00E1-162[»]
    3F1GX-ray3.00E1-162[»]
    3MR8X-ray3.62E5-155[»]
    3MS0X-ray3.62E5-155[»]
    3PYNX-ray3.50E5-155[»]
    3PYQX-ray3.50E5-155[»]
    3PYSX-ray3.40E5-155[»]
    3PYUX-ray3.40E5-155[»]
    4KBTX-ray3.86E5-155[»]
    4KBVX-ray3.86E5-155[»]
    4KCYX-ray3.50E5-155[»]
    4KD0X-ray3.50E5-155[»]
    4KD8X-ray3.50E5-155[»]
    4KDAX-ray3.50E5-155[»]
    4KDGX-ray4.00E5-155[»]
    4KDJX-ray4.00E5-155[»]
    4KFHX-ray3.40E5-155[»]
    4KFKX-ray3.40E5-155[»]
    4KVBX-ray4.20E1-162[»]
    4L6KX-ray3.40E5-155[»]
    4L6MX-ray3.40E5-155[»]
    ProteinModelPortaliP62665.
    SMRiP62665. Positions 1-157.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62665.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini7 – 7064S5 DRBMAdd
    BLAST

    Domaini

    The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.

    Sequence similaritiesi

    Belongs to the ribosomal protein S5P family.Curated
    Contains 1 S5 DRBM domain.Curated

    Phylogenomic databases

    eggNOGiCOG0098.
    KOiK02988.
    OMAiSAKVMMK.
    OrthoDBiEOG6FJNM5.

    Family and domain databases

    Gene3Di3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPiMF_01307_B. Ribosomal_S5_B.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view]
    PANTHERiPTHR13718. PTHR13718. 1 hit.
    PfamiPF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
    PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62665-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE    50
    VPLAVQKAGY YARRNMVEVP LQNGTIPHEI EVEFGASKIV LKPAAPGTGV 100
    IAGAVPRAIL ELAGVTDILT KELGSRNPIN IAYATMEALR QLRTKADVER 150
    LRKGEAHAQA QG 162
    Length:162
    Mass (Da):17,557
    Last modified:January 23, 2007 - v2
    Checksum:iBE3367CB619E68D2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81653.1.
    RefSeqiYP_005280.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81653; AAS81653; TT_C1311.
    GeneIDi2776437.
    KEGGitth:TTC1311.
    PATRICi23953029. VBITheThe54392_1303.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81653.1 .
    RefSeqi YP_005280.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 f 1-162 [» ]
    3D5A X-ray 3.21 E 1-162 [» ]
    3D5C X-ray 3.21 E 1-162 [» ]
    3F1E X-ray 3.00 E 1-162 [» ]
    3F1G X-ray 3.00 E 1-162 [» ]
    3MR8 X-ray 3.62 E 5-155 [» ]
    3MS0 X-ray 3.62 E 5-155 [» ]
    3PYN X-ray 3.50 E 5-155 [» ]
    3PYQ X-ray 3.50 E 5-155 [» ]
    3PYS X-ray 3.40 E 5-155 [» ]
    3PYU X-ray 3.40 E 5-155 [» ]
    4KBT X-ray 3.86 E 5-155 [» ]
    4KBV X-ray 3.86 E 5-155 [» ]
    4KCY X-ray 3.50 E 5-155 [» ]
    4KD0 X-ray 3.50 E 5-155 [» ]
    4KD8 X-ray 3.50 E 5-155 [» ]
    4KDA X-ray 3.50 E 5-155 [» ]
    4KDG X-ray 4.00 E 5-155 [» ]
    4KDJ X-ray 4.00 E 5-155 [» ]
    4KFH X-ray 3.40 E 5-155 [» ]
    4KFK X-ray 3.40 E 5-155 [» ]
    4KVB X-ray 4.20 E 1-162 [» ]
    4L6K X-ray 3.40 E 5-155 [» ]
    4L6M X-ray 3.40 E 5-155 [» ]
    ProteinModelPortali P62665.
    SMRi P62665. Positions 1-157.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81653 ; AAS81653 ; TT_C1311 .
    GeneIDi 2776437.
    KEGGi tth:TTC1311.
    PATRICi 23953029. VBITheThe54392_1303.

    Phylogenomic databases

    eggNOGi COG0098.
    KOi K02988.
    OMAi SAKVMMK.
    OrthoDBi EOG6FJNM5.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1326-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62665.

    Family and domain databases

    Gene3Di 3.30.160.20. 1 hit.
    3.30.230.10. 1 hit.
    HAMAPi MF_01307_B. Ribosomal_S5_B.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR000851. Ribosomal_S5.
    IPR005712. Ribosomal_S5_bac-type.
    IPR005324. Ribosomal_S5_C.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
    IPR013810. Ribosomal_S5_N.
    IPR018192. Ribosomal_S5_N_CS.
    [Graphical view ]
    PANTHERi PTHR13718. PTHR13718. 1 hit.
    Pfami PF00333. Ribosomal_S5. 1 hit.
    PF03719. Ribosomal_S5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    TIGRFAMsi TIGR01021. rpsE_bact. 1 hit.
    PROSITEi PS00585. RIBOSOMAL_S5. 1 hit.
    PS50881. S5_DSRBD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS5_THET2
    AccessioniPrimary (citable) accession number: P62665
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 77 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3