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P62665 (RS5_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S5
Gene names
Name:rpsE
Synonyms:rps5
Ordered Locus Names:TT_C1311
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length162 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

With S4 and S12 plays an important role in translational accuracy By similarity. HAMAP-Rule MF_01307_B

Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. HAMAP-Rule MF_01307_B

Subunit structure

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity.

Domain

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity. HAMAP-Rule MF_01307_B

Sequence similarities

Belongs to the ribosomal protein S5P family.

Contains 1 S5 DRBM domain.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentsmall ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 16216130S ribosomal protein S5 HAMAP-Rule MF_01307_B
PRO_0000131620

Regions

Domain7 – 7064S5 DRBM

Secondary structure

............................ 162
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P62665 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: BE3367CB619E68D2

FASTA16217,557
        10         20         30         40         50         60 
MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE VPLAVQKAGY 

        70         80         90        100        110        120 
YARRNMVEVP LQNGTIPHEI EVEFGASKIV LKPAAPGTGV IAGAVPRAIL ELAGVTDILT 

       130        140        150        160 
KELGSRNPIN IAYATMEALR QLRTKADVER LRKGEAHAQA QG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81653.1.
RefSeqYP_005280.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83f1-162[»]
3D5AX-ray3.21E1-162[»]
3D5CX-ray3.21E1-162[»]
3F1EX-ray3.00E1-162[»]
3F1GX-ray3.00E1-162[»]
3MR8X-ray3.62E5-155[»]
3MS0X-ray3.62E5-155[»]
3PYNX-ray3.50E5-155[»]
3PYQX-ray3.50E5-155[»]
3PYSX-ray3.40E5-155[»]
3PYUX-ray3.40E5-155[»]
4KBTX-ray3.86E5-155[»]
4KBVX-ray3.86E5-155[»]
4KCYX-ray3.50E5-155[»]
4KD0X-ray3.50E5-155[»]
4KD8X-ray3.50E5-155[»]
4KDAX-ray3.50E5-155[»]
4KDGX-ray4.00E5-155[»]
4KDJX-ray4.00E5-155[»]
4KFHX-ray3.40E5-155[»]
4KFKX-ray3.40E5-155[»]
4L6KX-ray3.40E5-155[»]
4L6MX-ray3.40E5-155[»]
ProteinModelPortalP62665.
SMRP62665. Positions 1-157.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81653; AAS81653; TT_C1311.
GeneID2776437.
KEGGtth:TTC1311.
PATRIC23953029. VBITheThe54392_1303.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0098.
KOK02988.
OMAYNASKIL.
OrthoDBEOG6FJNM5.
ProtClustDBPRK00550.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1326-MONOMER.

Family and domain databases

Gene3D3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPMF_01307_B. Ribosomal_S5_B.
InterProIPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERPTHR13718. PTHR13718. 1 hit.
PfamPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
TIGRFAMsTIGR01021. rpsE_bact. 1 hit.
PROSITEPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP62665.

Entry information

Entry nameRS5_THET2
AccessionPrimary (citable) accession number: P62665
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 74 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references