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P62665

- RS5_THET2

UniProt

P62665 - RS5_THET2

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Protein

30S ribosomal protein S5

Gene
rpsE, rps5, TT_C1311
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

With S4 and S12 plays an important role in translational accuracy By similarity.UniRule annotation
Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1326-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5
Gene namesi
Name:rpsE
Synonyms:rps5
Ordered Locus Names:TT_C1311
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 16216130S ribosomal protein S5UniRule annotationPRO_0000131620Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity.

Structurei

Secondary structure

1
162
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 126
Beta strandi18 – 203
Beta strandi23 – 253
Beta strandi28 – 358
Beta strandi37 – 4711
Beta strandi48 – 503
Helixi51 – 6414
Beta strandi65 – 673
Beta strandi80 – 845
Beta strandi87 – 937
Beta strandi99 – 1024
Helixi104 – 1129
Beta strandi117 – 1248
Helixi128 – 13912
Helixi145 – 1517

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83f1-162[»]
3D5AX-ray3.21E1-162[»]
3D5CX-ray3.21E1-162[»]
3F1EX-ray3.00E1-162[»]
3F1GX-ray3.00E1-162[»]
3MR8X-ray3.62E5-155[»]
3MS0X-ray3.62E5-155[»]
3PYNX-ray3.50E5-155[»]
3PYQX-ray3.50E5-155[»]
3PYSX-ray3.40E5-155[»]
3PYUX-ray3.40E5-155[»]
4KBTX-ray3.86E5-155[»]
4KBVX-ray3.86E5-155[»]
4KCYX-ray3.50E5-155[»]
4KD0X-ray3.50E5-155[»]
4KD8X-ray3.50E5-155[»]
4KDAX-ray3.50E5-155[»]
4KDGX-ray4.00E5-155[»]
4KDJX-ray4.00E5-155[»]
4KFHX-ray3.40E5-155[»]
4KFKX-ray3.40E5-155[»]
4KVBX-ray4.20E1-162[»]
4L6KX-ray3.40E5-155[»]
4L6MX-ray3.40E5-155[»]
ProteinModelPortaliP62665.
SMRiP62665. Positions 1-157.

Miscellaneous databases

EvolutionaryTraceiP62665.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 7064S5 DRBMAdd
BLAST

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Sequence similaritiesi

Contains 1 S5 DRBM domain.

Phylogenomic databases

eggNOGiCOG0098.
KOiK02988.
OMAiSAKVMMK.
OrthoDBiEOG6FJNM5.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62665-1 [UniParc]FASTAAdd to Basket

« Hide

MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE    50
VPLAVQKAGY YARRNMVEVP LQNGTIPHEI EVEFGASKIV LKPAAPGTGV 100
IAGAVPRAIL ELAGVTDILT KELGSRNPIN IAYATMEALR QLRTKADVER 150
LRKGEAHAQA QG 162
Length:162
Mass (Da):17,557
Last modified:January 23, 2007 - v2
Checksum:iBE3367CB619E68D2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81653.1.
RefSeqiYP_005280.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81653; AAS81653; TT_C1311.
GeneIDi2776437.
KEGGitth:TTC1311.
PATRICi23953029. VBITheThe54392_1303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81653.1 .
RefSeqi YP_005280.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QNH X-ray 3.83 f 1-162 [» ]
3D5A X-ray 3.21 E 1-162 [» ]
3D5C X-ray 3.21 E 1-162 [» ]
3F1E X-ray 3.00 E 1-162 [» ]
3F1G X-ray 3.00 E 1-162 [» ]
3MR8 X-ray 3.62 E 5-155 [» ]
3MS0 X-ray 3.62 E 5-155 [» ]
3PYN X-ray 3.50 E 5-155 [» ]
3PYQ X-ray 3.50 E 5-155 [» ]
3PYS X-ray 3.40 E 5-155 [» ]
3PYU X-ray 3.40 E 5-155 [» ]
4KBT X-ray 3.86 E 5-155 [» ]
4KBV X-ray 3.86 E 5-155 [» ]
4KCY X-ray 3.50 E 5-155 [» ]
4KD0 X-ray 3.50 E 5-155 [» ]
4KD8 X-ray 3.50 E 5-155 [» ]
4KDA X-ray 3.50 E 5-155 [» ]
4KDG X-ray 4.00 E 5-155 [» ]
4KDJ X-ray 4.00 E 5-155 [» ]
4KFH X-ray 3.40 E 5-155 [» ]
4KFK X-ray 3.40 E 5-155 [» ]
4KVB X-ray 4.20 E 1-162 [» ]
4L6K X-ray 3.40 E 5-155 [» ]
4L6M X-ray 3.40 E 5-155 [» ]
ProteinModelPortali P62665.
SMRi P62665. Positions 1-157.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81653 ; AAS81653 ; TT_C1311 .
GeneIDi 2776437.
KEGGi tth:TTC1311.
PATRICi 23953029. VBITheThe54392_1303.

Phylogenomic databases

eggNOGi COG0098.
KOi K02988.
OMAi SAKVMMK.
OrthoDBi EOG6FJNM5.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1326-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62665.

Family and domain databases

Gene3Di 3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPi MF_01307_B. Ribosomal_S5_B.
InterProi IPR014720. dsRNA-bd_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view ]
PANTHERi PTHR13718. PTHR13718. 1 hit.
Pfami PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view ]
SUPFAMi SSF54211. SSF54211. 1 hit.
TIGRFAMsi TIGR01021. rpsE_bact. 1 hit.
PROSITEi PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS5_THET2
AccessioniPrimary (citable) accession number: P62665
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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