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P62663

- RS3_THET2

UniProt

P62663 - RS3_THET2

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Protein
30S ribosomal protein S3
Gene
rpsC, rps3, TT_C1322
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation By similarity.UniRule annotation

GO - Molecular functioni

  1. mRNA binding Source: UniProtKB-HAMAP
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1337-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S3
Gene namesi
Name:rpsC
Synonyms:rps3
Ordered Locus Names:TT_C1322
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 23923830S ribosomal protein S3UniRule annotation
PRO_0000130222Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14 By similarity.

Protein-protein interaction databases

STRINGi262724.TTC1322.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi7 – 104
Turni11 – 155
Beta strandi19 – 224
Turni26 – 283
Helixi29 – 4517
Helixi48 – 503
Beta strandi52 – 554
Beta strandi57 – 659
Beta strandi68 – 714
Helixi74 – 774
Turni78 – 814
Helixi83 – 9210
Beta strandi95 – 984
Beta strandi101 – 1055
Helixi109 – 1113
Helixi113 – 12513
Helixi130 – 14314
Beta strandi147 – 1559
Helixi157 – 1593
Beta strandi164 – 1663
Beta strandi169 – 1713
Beta strandi175 – 1784
Beta strandi182 – 1876
Beta strandi196 – 2038

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OW8X-ray3.71d1-239[»]
2QNHX-ray3.83d1-239[»]
3D5AX-ray3.21C1-239[»]
3D5CX-ray3.21C1-239[»]
3F1EX-ray3.00C1-239[»]
3F1GX-ray3.00C1-239[»]
3MR8X-ray3.62C2-207[»]
3MS0X-ray3.62C2-207[»]
3PYNX-ray3.50C2-207[»]
3PYQX-ray3.50C2-207[»]
3PYSX-ray3.40C2-207[»]
3PYUX-ray3.40C2-207[»]
4KBTX-ray3.86C2-208[»]
4KBVX-ray3.86C2-208[»]
4KCYX-ray3.50C2-208[»]
4KD0X-ray3.50C2-208[»]
4KD8X-ray3.50C2-208[»]
4KDAX-ray3.50C2-208[»]
4KDGX-ray4.00C2-208[»]
4KDJX-ray4.00C2-208[»]
4KFHX-ray3.40C2-207[»]
4KFKX-ray3.40C2-207[»]
4KVBX-ray4.20C1-239[»]
4L6KX-ray3.40C2-207[»]
4L6MX-ray3.40C2-207[»]
ProteinModelPortaliP62663.
SMRiP62663. Positions 2-207.

Miscellaneous databases

EvolutionaryTraceiP62663.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 10869KH type-2
Add
BLAST

Sequence similaritiesi

Contains 1 KH type-2 domain.

Phylogenomic databases

eggNOGiCOG0092.
KOiK02982.
OMAiVEYAFTE.
OrthoDBiEOG6K13X3.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPiMF_01309_B. Ribosomal_S3_B.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62663-1 [UniParc]FASTAAdd to Basket

« Hide

MGNKIHPIGF RLGITRDWES RWYAGKKQYR HLLLEDQRIR GLLEKELYSA    50
GLARVDIERA ADNVAVTVHV AKPGVVIGRG GERIRVLREE LAKLTGKNVA 100
LNVQEVQNPN LSAPLVAQRV AEQIERRFAV RRAIKQAVQR VMESGAKGAK 150
VIVSGRIGGA EQARTEWAAQ GRVPLHTLRA NIDYGFALAR TTYGVLGVKA 200
YIFLGEVIGG QKPKARPELP KAEERPRRRR PAVRVKKEE 239
Length:239
Mass (Da):26,701
Last modified:January 23, 2007 - v2
Checksum:iAD585A1D53AC7F04
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ409330 Genomic DNA. Translation: CAC35062.1.
AE017221 Genomic DNA. Translation: AAS81664.1.
RefSeqiYP_005291.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81664; AAS81664; TT_C1322.
GeneIDi2775806.
KEGGitth:TTC1322.
PATRICi23953051. VBITheThe54392_1314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ409330 Genomic DNA. Translation: CAC35062.1 .
AE017221 Genomic DNA. Translation: AAS81664.1 .
RefSeqi YP_005291.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2OW8 X-ray 3.71 d 1-239 [» ]
2QNH X-ray 3.83 d 1-239 [» ]
3D5A X-ray 3.21 C 1-239 [» ]
3D5C X-ray 3.21 C 1-239 [» ]
3F1E X-ray 3.00 C 1-239 [» ]
3F1G X-ray 3.00 C 1-239 [» ]
3MR8 X-ray 3.62 C 2-207 [» ]
3MS0 X-ray 3.62 C 2-207 [» ]
3PYN X-ray 3.50 C 2-207 [» ]
3PYQ X-ray 3.50 C 2-207 [» ]
3PYS X-ray 3.40 C 2-207 [» ]
3PYU X-ray 3.40 C 2-207 [» ]
4KBT X-ray 3.86 C 2-208 [» ]
4KBV X-ray 3.86 C 2-208 [» ]
4KCY X-ray 3.50 C 2-208 [» ]
4KD0 X-ray 3.50 C 2-208 [» ]
4KD8 X-ray 3.50 C 2-208 [» ]
4KDA X-ray 3.50 C 2-208 [» ]
4KDG X-ray 4.00 C 2-208 [» ]
4KDJ X-ray 4.00 C 2-208 [» ]
4KFH X-ray 3.40 C 2-207 [» ]
4KFK X-ray 3.40 C 2-207 [» ]
4KVB X-ray 4.20 C 1-239 [» ]
4L6K X-ray 3.40 C 2-207 [» ]
4L6M X-ray 3.40 C 2-207 [» ]
ProteinModelPortali P62663.
SMRi P62663. Positions 2-207.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1322.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81664 ; AAS81664 ; TT_C1322 .
GeneIDi 2775806.
KEGGi tth:TTC1322.
PATRICi 23953051. VBITheThe54392_1314.

Phylogenomic databases

eggNOGi COG0092.
KOi K02982.
OMAi VEYAFTE.
OrthoDBi EOG6K13X3.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1337-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62663.

Family and domain databases

Gene3Di 3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPi MF_01309_B. Ribosomal_S3_B.
InterProi IPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view ]
Pfami PF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view ]
SMARTi SM00322. KH. 1 hit.
[Graphical view ]
SUPFAMi SSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsi TIGR01009. rpsC_bact. 1 hit.
PROSITEi PS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS3_THET2
AccessioniPrimary (citable) accession number: P62663
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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