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Protein

30S ribosomal protein S2

Gene

rpsB

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S2
Gene namesi
Name:rpsB
Synonyms:rps2
Ordered Locus Names:TT_C0509
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001342632 – 25630S ribosomal protein S2Add BLAST255

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S8 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC0509.

Structurei

Secondary structure

1256
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 13Combined sources6
Turni14 – 16Combined sources3
Beta strandi20 – 22Combined sources3
Helixi28 – 31Combined sources4
Beta strandi32 – 36Combined sources5
Beta strandi39 – 42Combined sources4
Helixi44 – 63Combined sources20
Beta strandi68 – 71Combined sources4
Helixi75 – 77Combined sources3
Helixi78 – 86Combined sources9
Turni87 – 89Combined sources3
Turni101 – 104Combined sources4
Helixi105 – 121Combined sources17
Beta strandi123 – 125Combined sources3
Beta strandi128 – 130Combined sources3
Helixi132 – 149Combined sources18
Turni150 – 154Combined sources5
Beta strandi160 – 165Combined sources6
Turni167 – 170Combined sources4
Helixi171 – 179Combined sources9
Beta strandi184 – 188Combined sources5
Beta strandi190 – 192Combined sources3
Helixi194 – 196Combined sources3
Beta strandi198 – 203Combined sources6
Beta strandi205 – 207Combined sources3
Helixi208 – 226Combined sources19
Helixi236 – 239Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20B1-256[»]
4V4GX-ray11.50B7-240[»]
4V4IX-ray3.71c1-256[»]
4V4JX-ray3.83c1-256[»]
4V63X-ray3.21AB/CB1-256[»]
4V67X-ray3.00AB/CB1-256[»]
4V7PX-ray3.62AB/DB7-240[»]
4V83X-ray3.50AB/CB7-240[»]
4V84X-ray3.40AB/CB7-240[»]
4V9JX-ray3.86AB/CB7-241[»]
4V9KX-ray3.50AB/CB7-241[»]
4V9LX-ray3.50AB/CB7-241[»]
4V9MX-ray4.00AB/CB7-241[»]
4V9NX-ray3.40AB/CB7-240[»]
4V9QX-ray3.40BB/DB7-240[»]
4W29X-ray3.80AB/CB7-241[»]
4XEJX-ray3.80AS02/BS027-240[»]
5J4DX-ray3.10KA/PC1-256[»]
ProteinModelPortaliP62662.
SMRiP62662.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62662.

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili104 – 149Add BLAST46

Sequence similaritiesi

Belongs to the ribosomal protein S2P family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG4105CE9. Bacteria.
COG0052. LUCA.
KOiK02967.
OMAiRYIYCAR.

Family and domain databases

CDDicd01425. RPS2. 1 hit.
HAMAPiMF_00291_B. Ribosomal_S2_B. 1 hit.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62662-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE
60 70 80 90 100
LERTFRFIED LAMRGGTILF VGTKKQAQDI VRMEAERAGM PYVNQRWLGG
110 120 130 140 150
MLTNFKTISQ RVHRLEELEA LFASPEIEER PKKEQVRLKH ELERLQKYLS
160 170 180 190 200
GFRLLKRLPD AIFVVDPTKE AIAVREARKL FIPVIALADT DSDPDLVDYI
210 220 230 240 250
IPGNDDAIRS IQLILSRAVD LIIQARGGVV EPSPSYALVQ EAEATETPEG

ESEVEA
Length:256
Mass (Da):29,277
Last modified:January 23, 2007 - v2
Checksum:i65D7958336911CE5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ409329 Genomic DNA. Translation: CAC35061.1.
AE017221 Genomic DNA. Translation: AAS80857.1.
RefSeqiWP_011172954.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80857; AAS80857; TT_C0509.
KEGGitth:TT_C0509.
PATRICi23951423. VBITheThe54392_0509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ409329 Genomic DNA. Translation: CAC35061.1.
AE017221 Genomic DNA. Translation: AAS80857.1.
RefSeqiWP_011172954.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20B1-256[»]
4V4GX-ray11.50B7-240[»]
4V4IX-ray3.71c1-256[»]
4V4JX-ray3.83c1-256[»]
4V63X-ray3.21AB/CB1-256[»]
4V67X-ray3.00AB/CB1-256[»]
4V7PX-ray3.62AB/DB7-240[»]
4V83X-ray3.50AB/CB7-240[»]
4V84X-ray3.40AB/CB7-240[»]
4V9JX-ray3.86AB/CB7-241[»]
4V9KX-ray3.50AB/CB7-241[»]
4V9LX-ray3.50AB/CB7-241[»]
4V9MX-ray4.00AB/CB7-241[»]
4V9NX-ray3.40AB/CB7-240[»]
4V9QX-ray3.40BB/DB7-240[»]
4W29X-ray3.80AB/CB7-241[»]
4XEJX-ray3.80AS02/BS027-240[»]
5J4DX-ray3.10KA/PC1-256[»]
ProteinModelPortaliP62662.
SMRiP62662.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0509.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80857; AAS80857; TT_C0509.
KEGGitth:TT_C0509.
PATRICi23951423. VBITheThe54392_0509.

Phylogenomic databases

eggNOGiENOG4105CE9. Bacteria.
COG0052. LUCA.
KOiK02967.
OMAiRYIYCAR.

Miscellaneous databases

EvolutionaryTraceiP62662.

Family and domain databases

CDDicd01425. RPS2. 1 hit.
HAMAPiMF_00291_B. Ribosomal_S2_B. 1 hit.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS2_THET2
AccessioniPrimary (citable) accession number: P62662
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.