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P62662

- RS2_THET2

UniProt

P62662 - RS2_THET2

Protein

30S ribosomal protein S2

Gene

rpsB

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 2 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit By similarity.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-520-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S2
    Gene namesi
    Name:rpsB
    Synonyms:rps2
    Ordered Locus Names:TT_C0509
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 25625530S ribosomal protein S2PRO_0000134263Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts protein S8 By similarity.By similarity

    Protein-protein interaction databases

    STRINGi262724.TTC0509.

    Structurei

    Secondary structure

    1
    256
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi8 – 136
    Turni14 – 163
    Beta strandi20 – 223
    Helixi28 – 314
    Beta strandi32 – 365
    Beta strandi39 – 424
    Helixi44 – 6320
    Beta strandi68 – 714
    Helixi75 – 773
    Helixi78 – 869
    Turni87 – 893
    Turni101 – 1044
    Helixi105 – 12117
    Beta strandi123 – 1253
    Beta strandi128 – 1303
    Helixi132 – 14918
    Turni150 – 1545
    Beta strandi160 – 1656
    Turni167 – 1704
    Helixi171 – 1799
    Beta strandi184 – 1885
    Beta strandi190 – 1923
    Helixi194 – 1963
    Beta strandi198 – 2036
    Beta strandi205 – 2073
    Helixi208 – 22619
    Helixi236 – 2394

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VOZX-ray11.50B7-240[»]
    2OW8X-ray3.71c1-256[»]
    2QNHX-ray3.83c1-256[»]
    3D5AX-ray3.21B1-256[»]
    3D5CX-ray3.21B1-256[»]
    3F1EX-ray3.00B1-256[»]
    3F1GX-ray3.00B1-256[»]
    3MR8X-ray3.62B7-240[»]
    3MS0X-ray3.62B7-240[»]
    3PYNX-ray3.50B7-240[»]
    3PYQX-ray3.50B7-240[»]
    3PYSX-ray3.40B7-240[»]
    3PYUX-ray3.40B7-240[»]
    4KBTX-ray3.86B7-241[»]
    4KBVX-ray3.86B7-241[»]
    4KCYX-ray3.50B7-241[»]
    4KD0X-ray3.50B7-241[»]
    4KD8X-ray3.50B7-241[»]
    4KDAX-ray3.50B7-241[»]
    4KDGX-ray4.00B7-241[»]
    4KDJX-ray4.00B7-241[»]
    4KFHX-ray3.40B7-240[»]
    4KFKX-ray3.40B7-240[»]
    4KVBX-ray4.20B1-256[»]
    4L6KX-ray3.40B7-240[»]
    4L6MX-ray3.40B7-240[»]
    ProteinModelPortaliP62662.
    SMRiP62662. Positions 2-250.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62662.

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili104 – 14946Add
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S2P family.Curated

    Keywords - Domaini

    Coiled coil

    Phylogenomic databases

    eggNOGiCOG0052.
    KOiK02967.
    OMAiMNSIDRM.
    OrthoDBiEOG6XWV6P.

    Family and domain databases

    HAMAPiMF_00291_B. Ribosomal_S2_B.
    InterProiIPR001865. Ribosomal_S2.
    IPR005706. Ribosomal_S2_bac/mit/plastid.
    IPR018130. Ribosomal_S2_CS.
    IPR023591. Ribosomal_S2_flav_dom.
    [Graphical view]
    PANTHERiPTHR12534. PTHR12534. 1 hit.
    PfamiPF00318. Ribosomal_S2. 1 hit.
    [Graphical view]
    PRINTSiPR00395. RIBOSOMALS2.
    SUPFAMiSSF52313. SSF52313. 1 hit.
    TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
    PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62662-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE    50
    LERTFRFIED LAMRGGTILF VGTKKQAQDI VRMEAERAGM PYVNQRWLGG 100
    MLTNFKTISQ RVHRLEELEA LFASPEIEER PKKEQVRLKH ELERLQKYLS 150
    GFRLLKRLPD AIFVVDPTKE AIAVREARKL FIPVIALADT DSDPDLVDYI 200
    IPGNDDAIRS IQLILSRAVD LIIQARGGVV EPSPSYALVQ EAEATETPEG 250
    ESEVEA 256
    Length:256
    Mass (Da):29,277
    Last modified:January 23, 2007 - v2
    Checksum:i65D7958336911CE5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ409329 Genomic DNA. Translation: CAC35061.1.
    AE017221 Genomic DNA. Translation: AAS80857.1.
    RefSeqiYP_004484.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS80857; AAS80857; TT_C0509.
    GeneIDi2775858.
    KEGGitth:TTC0509.
    PATRICi23951423. VBITheThe54392_0509.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ409329 Genomic DNA. Translation: CAC35061.1 .
    AE017221 Genomic DNA. Translation: AAS80857.1 .
    RefSeqi YP_004484.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VOZ X-ray 11.50 B 7-240 [» ]
    2OW8 X-ray 3.71 c 1-256 [» ]
    2QNH X-ray 3.83 c 1-256 [» ]
    3D5A X-ray 3.21 B 1-256 [» ]
    3D5C X-ray 3.21 B 1-256 [» ]
    3F1E X-ray 3.00 B 1-256 [» ]
    3F1G X-ray 3.00 B 1-256 [» ]
    3MR8 X-ray 3.62 B 7-240 [» ]
    3MS0 X-ray 3.62 B 7-240 [» ]
    3PYN X-ray 3.50 B 7-240 [» ]
    3PYQ X-ray 3.50 B 7-240 [» ]
    3PYS X-ray 3.40 B 7-240 [» ]
    3PYU X-ray 3.40 B 7-240 [» ]
    4KBT X-ray 3.86 B 7-241 [» ]
    4KBV X-ray 3.86 B 7-241 [» ]
    4KCY X-ray 3.50 B 7-241 [» ]
    4KD0 X-ray 3.50 B 7-241 [» ]
    4KD8 X-ray 3.50 B 7-241 [» ]
    4KDA X-ray 3.50 B 7-241 [» ]
    4KDG X-ray 4.00 B 7-241 [» ]
    4KDJ X-ray 4.00 B 7-241 [» ]
    4KFH X-ray 3.40 B 7-240 [» ]
    4KFK X-ray 3.40 B 7-240 [» ]
    4KVB X-ray 4.20 B 1-256 [» ]
    4L6K X-ray 3.40 B 7-240 [» ]
    4L6M X-ray 3.40 B 7-240 [» ]
    ProteinModelPortali P62662.
    SMRi P62662. Positions 2-250.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC0509.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS80857 ; AAS80857 ; TT_C0509 .
    GeneIDi 2775858.
    KEGGi tth:TTC0509.
    PATRICi 23951423. VBITheThe54392_0509.

    Phylogenomic databases

    eggNOGi COG0052.
    KOi K02967.
    OMAi MNSIDRM.
    OrthoDBi EOG6XWV6P.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-520-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62662.

    Family and domain databases

    HAMAPi MF_00291_B. Ribosomal_S2_B.
    InterProi IPR001865. Ribosomal_S2.
    IPR005706. Ribosomal_S2_bac/mit/plastid.
    IPR018130. Ribosomal_S2_CS.
    IPR023591. Ribosomal_S2_flav_dom.
    [Graphical view ]
    PANTHERi PTHR12534. PTHR12534. 1 hit.
    Pfami PF00318. Ribosomal_S2. 1 hit.
    [Graphical view ]
    PRINTSi PR00395. RIBOSOMALS2.
    SUPFAMi SSF52313. SSF52313. 1 hit.
    TIGRFAMsi TIGR01011. rpsB_bact. 1 hit.
    PROSITEi PS00962. RIBOSOMAL_S2_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
      Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
      EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS2_THET2
    AccessioniPrimary (citable) accession number: P62662
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 78 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3