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P62662

- RS2_THET2

UniProt

P62662 - RS2_THET2

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Protein

30S ribosomal protein S2

Gene
rpsB, rps2, TT_C0509
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-520-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S2
Gene namesi
Name:rpsB
Synonyms:rps2
Ordered Locus Names:TT_C0509
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 25625530S ribosomal protein S2UniRule annotationPRO_0000134263Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S8 By similarity.

Protein-protein interaction databases

STRINGi262724.TTC0509.

Structurei

Secondary structure

1
256
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 136
Turni14 – 163
Beta strandi20 – 223
Helixi28 – 314
Beta strandi32 – 365
Beta strandi39 – 424
Helixi44 – 6320
Beta strandi68 – 714
Helixi75 – 773
Helixi78 – 869
Turni87 – 893
Turni101 – 1044
Helixi105 – 12117
Beta strandi123 – 1253
Beta strandi128 – 1303
Helixi132 – 14918
Turni150 – 1545
Beta strandi160 – 1656
Turni167 – 1704
Helixi171 – 1799
Beta strandi184 – 1885
Beta strandi190 – 1923
Helixi194 – 1963
Beta strandi198 – 2036
Beta strandi205 – 2073
Helixi208 – 22619
Helixi236 – 2394

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VOZX-ray11.50B7-240[»]
2OW8X-ray3.71c1-256[»]
2QNHX-ray3.83c1-256[»]
3D5AX-ray3.21B1-256[»]
3D5CX-ray3.21B1-256[»]
3F1EX-ray3.00B1-256[»]
3F1GX-ray3.00B1-256[»]
3MR8X-ray3.62B7-240[»]
3MS0X-ray3.62B7-240[»]
3PYNX-ray3.50B7-240[»]
3PYQX-ray3.50B7-240[»]
3PYSX-ray3.40B7-240[»]
3PYUX-ray3.40B7-240[»]
4KBTX-ray3.86B7-241[»]
4KBVX-ray3.86B7-241[»]
4KCYX-ray3.50B7-241[»]
4KD0X-ray3.50B7-241[»]
4KD8X-ray3.50B7-241[»]
4KDAX-ray3.50B7-241[»]
4KDGX-ray4.00B7-241[»]
4KDJX-ray4.00B7-241[»]
4KFHX-ray3.40B7-240[»]
4KFKX-ray3.40B7-240[»]
4KVBX-ray4.20B1-256[»]
4L6KX-ray3.40B7-240[»]
4L6MX-ray3.40B7-240[»]
ProteinModelPortaliP62662.
SMRiP62662. Positions 2-250.

Miscellaneous databases

EvolutionaryTraceiP62662.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili104 – 14946UniRule annotationAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiCOG0052.
KOiK02967.
OMAiMNSIDRM.
OrthoDBiEOG6XWV6P.

Family and domain databases

HAMAPiMF_00291_B. Ribosomal_S2_B.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62662-1 [UniParc]FASTAAdd to Basket

« Hide

MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE    50
LERTFRFIED LAMRGGTILF VGTKKQAQDI VRMEAERAGM PYVNQRWLGG 100
MLTNFKTISQ RVHRLEELEA LFASPEIEER PKKEQVRLKH ELERLQKYLS 150
GFRLLKRLPD AIFVVDPTKE AIAVREARKL FIPVIALADT DSDPDLVDYI 200
IPGNDDAIRS IQLILSRAVD LIIQARGGVV EPSPSYALVQ EAEATETPEG 250
ESEVEA 256
Length:256
Mass (Da):29,277
Last modified:January 23, 2007 - v2
Checksum:i65D7958336911CE5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ409329 Genomic DNA. Translation: CAC35061.1.
AE017221 Genomic DNA. Translation: AAS80857.1.
RefSeqiYP_004484.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80857; AAS80857; TT_C0509.
GeneIDi2775858.
KEGGitth:TTC0509.
PATRICi23951423. VBITheThe54392_0509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ409329 Genomic DNA. Translation: CAC35061.1 .
AE017221 Genomic DNA. Translation: AAS80857.1 .
RefSeqi YP_004484.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VOZ X-ray 11.50 B 7-240 [» ]
2OW8 X-ray 3.71 c 1-256 [» ]
2QNH X-ray 3.83 c 1-256 [» ]
3D5A X-ray 3.21 B 1-256 [» ]
3D5C X-ray 3.21 B 1-256 [» ]
3F1E X-ray 3.00 B 1-256 [» ]
3F1G X-ray 3.00 B 1-256 [» ]
3MR8 X-ray 3.62 B 7-240 [» ]
3MS0 X-ray 3.62 B 7-240 [» ]
3PYN X-ray 3.50 B 7-240 [» ]
3PYQ X-ray 3.50 B 7-240 [» ]
3PYS X-ray 3.40 B 7-240 [» ]
3PYU X-ray 3.40 B 7-240 [» ]
4KBT X-ray 3.86 B 7-241 [» ]
4KBV X-ray 3.86 B 7-241 [» ]
4KCY X-ray 3.50 B 7-241 [» ]
4KD0 X-ray 3.50 B 7-241 [» ]
4KD8 X-ray 3.50 B 7-241 [» ]
4KDA X-ray 3.50 B 7-241 [» ]
4KDG X-ray 4.00 B 7-241 [» ]
4KDJ X-ray 4.00 B 7-241 [» ]
4KFH X-ray 3.40 B 7-240 [» ]
4KFK X-ray 3.40 B 7-240 [» ]
4KVB X-ray 4.20 B 1-256 [» ]
4L6K X-ray 3.40 B 7-240 [» ]
4L6M X-ray 3.40 B 7-240 [» ]
ProteinModelPortali P62662.
SMRi P62662. Positions 2-250.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC0509.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS80857 ; AAS80857 ; TT_C0509 .
GeneIDi 2775858.
KEGGi tth:TTC0509.
PATRICi 23951423. VBITheThe54392_0509.

Phylogenomic databases

eggNOGi COG0052.
KOi K02967.
OMAi MNSIDRM.
OrthoDBi EOG6XWV6P.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-520-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62662.

Family and domain databases

HAMAPi MF_00291_B. Ribosomal_S2_B.
InterProi IPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view ]
PANTHERi PTHR12534. PTHR12534. 1 hit.
Pfami PF00318. Ribosomal_S2. 1 hit.
[Graphical view ]
PRINTSi PR00395. RIBOSOMALS2.
SUPFAMi SSF52313. SSF52313. 1 hit.
TIGRFAMsi TIGR01011. rpsB_bact. 1 hit.
PROSITEi PS00962. RIBOSOMAL_S2_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS2_THET2
AccessioniPrimary (citable) accession number: P62662
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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