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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 16S ribosomal RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20
Gene namesi
Name:rpsT
Synonyms:rps20
Ordered Locus Names:TT_C1031
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 10610530S ribosomal protein S20PRO_0000168049Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1031.

Structurei

Secondary structure

1
106
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 4533Combined sources
Helixi49 – 6618Combined sources
Turni67 – 704Combined sources
Helixi76 – 9217Combined sources
Turni93 – 953Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-W1-106[»]
2UXBX-ray3.10T1-106[»]
2UXCX-ray2.90T1-106[»]
2UXDX-ray3.20T1-106[»]
2VQEX-ray2.50T1-106[»]
2VQFX-ray2.90T1-106[»]
3T1HX-ray3.11T1-106[»]
3T1YX-ray2.80T1-106[»]
4KVBX-ray4.20T1-106[»]
4V4GX-ray11.50T8-106[»]
4V4IX-ray3.71u1-106[»]
4V4JX-ray3.83u1-106[»]
4V63X-ray3.21AT/CT1-106[»]
4V67X-ray3.00AT/CT1-106[»]
4V7PX-ray3.62AT/DT8-106[»]
4V83X-ray3.50AT/CT8-106[»]
4V84X-ray3.40AT/CT8-106[»]
4V9JX-ray3.86AT/CT8-106[»]
4V9KX-ray3.50AT/CT8-106[»]
4V9LX-ray3.50AT/CT8-106[»]
4V9MX-ray4.00AT/CT8-106[»]
4V9NX-ray3.40AT/CT8-106[»]
4V9QX-ray3.40BT/DT8-106[»]
4W29X-ray3.80AT/CT8-106[»]
4XEJX-ray3.80AS20/BS208-106[»]
5J4DX-ray3.10CB/HD1-106[»]
ProteinModelPortaliP62661.
SMRiP62661. Positions 8-106.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62661.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S20P family.Curated

Phylogenomic databases

eggNOGiENOG4108AH5. Bacteria.
COG0268. LUCA.
KOiK02968.
OMAiKVAMKWI.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20. 1 hit.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62661-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQKKPKRNL SALKRHRQSL KRRLRNKAKK SAIKTLSKKA VQLAQEGKAE
60 70 80 90 100
EALKIMRKAE SLIDKAAKGS TLHKNAAARR KSRLMRKVRQ LLEAAGAPLI

GGGLSA
Length:106
Mass (Da):11,689
Last modified:January 23, 2007 - v2
Checksum:iBEEFCB635DF365E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81373.1.
RefSeqiWP_008632893.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81373; AAS81373; TT_C1031.
KEGGitth:TTC1031.
PATRICi23952463. VBITheThe54392_1022.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81373.1.
RefSeqiWP_008632893.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-W1-106[»]
2UXBX-ray3.10T1-106[»]
2UXCX-ray2.90T1-106[»]
2UXDX-ray3.20T1-106[»]
2VQEX-ray2.50T1-106[»]
2VQFX-ray2.90T1-106[»]
3T1HX-ray3.11T1-106[»]
3T1YX-ray2.80T1-106[»]
4KVBX-ray4.20T1-106[»]
4V4GX-ray11.50T8-106[»]
4V4IX-ray3.71u1-106[»]
4V4JX-ray3.83u1-106[»]
4V63X-ray3.21AT/CT1-106[»]
4V67X-ray3.00AT/CT1-106[»]
4V7PX-ray3.62AT/DT8-106[»]
4V83X-ray3.50AT/CT8-106[»]
4V84X-ray3.40AT/CT8-106[»]
4V9JX-ray3.86AT/CT8-106[»]
4V9KX-ray3.50AT/CT8-106[»]
4V9LX-ray3.50AT/CT8-106[»]
4V9MX-ray4.00AT/CT8-106[»]
4V9NX-ray3.40AT/CT8-106[»]
4V9QX-ray3.40BT/DT8-106[»]
4W29X-ray3.80AT/CT8-106[»]
4XEJX-ray3.80AS20/BS208-106[»]
5J4DX-ray3.10CB/HD1-106[»]
ProteinModelPortaliP62661.
SMRiP62661. Positions 8-106.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1031.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81373; AAS81373; TT_C1031.
KEGGitth:TTC1031.
PATRICi23952463. VBITheThe54392_1022.

Phylogenomic databases

eggNOGiENOG4108AH5. Bacteria.
COG0268. LUCA.
KOiK02968.
OMAiKVAMKWI.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1043-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62661.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20. 1 hit.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS20_THET2
AccessioniPrimary (citable) accession number: P62661
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.