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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 16S ribosomal RNA.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20
Gene namesi
Name:rpsT
Synonyms:rps20
Ordered Locus Names:TT_C1031
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 10610530S ribosomal protein S20PRO_0000168049Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1031.

Structurei

Secondary structure

1
106
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 4533Combined sources
Helixi49 – 6618Combined sources
Turni67 – 704Combined sources
Helixi76 – 9217Combined sources
Turni93 – 953Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-W1-106[»]
2UXBX-ray3.10T1-106[»]
2UXCX-ray2.90T1-106[»]
2UXDX-ray3.20T1-106[»]
2VQEX-ray2.50T1-106[»]
2VQFX-ray2.90T1-106[»]
3T1HX-ray3.11T1-106[»]
3T1YX-ray2.80T1-106[»]
4KVBX-ray4.20T1-106[»]
4V4GX-ray11.50T8-106[»]
4V4IX-ray3.71u1-106[»]
4V4JX-ray3.83u1-106[»]
4V63X-ray3.21T1-106[»]
4V67X-ray3.00T1-106[»]
4V7PX-ray3.62T8-106[»]
4V83X-ray3.50T8-106[»]
4V84X-ray3.40T8-106[»]
4V9JX-ray3.86T8-106[»]
4V9KX-ray3.50T8-106[»]
4V9LX-ray3.50T8-106[»]
4V9MX-ray4.00T8-106[»]
4V9NX-ray3.40T8-106[»]
4V9QX-ray3.40T8-106[»]
4W29X-ray3.80T8-106[»]
ProteinModelPortaliP62661.
SMRiP62661. Positions 8-106.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62661.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S20P family.Curated

Phylogenomic databases

eggNOGiCOG0268.
KOiK02968.
OMAiRFNKIAG.
OrthoDBiEOG6HMXNQ.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62661-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQKKPKRNL SALKRHRQSL KRRLRNKAKK SAIKTLSKKA VQLAQEGKAE
60 70 80 90 100
EALKIMRKAE SLIDKAAKGS TLHKNAAARR KSRLMRKVRQ LLEAAGAPLI

GGGLSA
Length:106
Mass (Da):11,689
Last modified:January 23, 2007 - v2
Checksum:iBEEFCB635DF365E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81373.1.
RefSeqiYP_005000.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81373; AAS81373; TT_C1031.
GeneIDi2774796.
KEGGitth:TTC1031.
PATRICi23952463. VBITheThe54392_1022.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81373.1.
RefSeqiYP_005000.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWTmodel-W1-106[»]
2UXBX-ray3.10T1-106[»]
2UXCX-ray2.90T1-106[»]
2UXDX-ray3.20T1-106[»]
2VQEX-ray2.50T1-106[»]
2VQFX-ray2.90T1-106[»]
3T1HX-ray3.11T1-106[»]
3T1YX-ray2.80T1-106[»]
4KVBX-ray4.20T1-106[»]
4V4GX-ray11.50T8-106[»]
4V4IX-ray3.71u1-106[»]
4V4JX-ray3.83u1-106[»]
4V63X-ray3.21T1-106[»]
4V67X-ray3.00T1-106[»]
4V7PX-ray3.62T8-106[»]
4V83X-ray3.50T8-106[»]
4V84X-ray3.40T8-106[»]
4V9JX-ray3.86T8-106[»]
4V9KX-ray3.50T8-106[»]
4V9LX-ray3.50T8-106[»]
4V9MX-ray4.00T8-106[»]
4V9NX-ray3.40T8-106[»]
4V9QX-ray3.40T8-106[»]
4W29X-ray3.80T8-106[»]
ProteinModelPortaliP62661.
SMRiP62661. Positions 8-106.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1031.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81373; AAS81373; TT_C1031.
GeneIDi2774796.
KEGGitth:TTC1031.
PATRICi23952463. VBITheThe54392_1022.

Phylogenomic databases

eggNOGiCOG0268.
KOiK02968.
OMAiRFNKIAG.
OrthoDBiEOG6HMXNQ.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1043-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62661.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS20_THET2
AccessioniPrimary (citable) accession number: P62661
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: March 4, 2015
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.