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Protein

30S ribosomal protein S19

Gene

rpsS

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1339-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S19
Gene namesi
Name:rpsS
Synonyms:rps19
Ordered Locus Names:TT_C1324
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 939230S ribosomal protein S19PRO_0000129926Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1324.

Structurei

Secondary structure

1
93
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 83Combined sources
Helixi13 – 2513Combined sources
Beta strandi30 – 323Combined sources
Beta strandi37 – 393Combined sources
Helixi42 – 443Combined sources
Beta strandi48 – 525Combined sources
Beta strandi54 – 563Combined sources
Beta strandi57 – 615Combined sources
Beta strandi63 – 664Combined sources
Beta strandi68 – 714Combined sources
Helixi72 – 743Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VOQX-ray11.50S2-81[»]
1VOSX-ray11.50S2-81[»]
1VOVX-ray11.50S2-81[»]
2OW8X-ray3.71t1-93[»]
4KVBX-ray4.20S1-93[»]
4V4IX-ray3.71t1-93[»]
4V4JX-ray3.83t1-93[»]
4V63X-ray3.21S1-93[»]
4V67X-ray3.00S1-93[»]
4V7PX-ray3.62S4-81[»]
4V83X-ray3.50S4-81[»]
4V84X-ray3.40S4-81[»]
4V9JX-ray3.86S4-82[»]
4V9KX-ray3.50S4-82[»]
4V9LX-ray3.50S4-82[»]
4V9MX-ray4.00S4-82[»]
4V9NX-ray3.40S4-81[»]
4V9QX-ray3.40S4-81[»]
4W29X-ray3.80S4-82[»]
ProteinModelPortaliP62660.
SMRiP62660. Positions 2-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62660.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S19P family.Curated

Phylogenomic databases

eggNOGiCOG0185.
KOiK02965.
OMAiVHNGRQF.
OrthoDBiEOG61S365.

Family and domain databases

Gene3Di3.30.860.10. 1 hit.
HAMAPiMF_00531. Ribosomal_S19.
InterProiIPR002222. Ribosomal_S19.
IPR005732. Ribosomal_S19_bac-type.
IPR020934. Ribosomal_S19_CS.
IPR023575. Ribosomal_S19_SF.
[Graphical view]
PANTHERiPTHR11880. PTHR11880. 1 hit.
PfamiPF00203. Ribosomal_S19. 1 hit.
[Graphical view]
PIRSFiPIRSF002144. Ribosomal_S19. 1 hit.
PRINTSiPR00975. RIBOSOMALS19.
SUPFAMiSSF54570. SSF54570. 1 hit.
TIGRFAMsiTIGR01050. rpsS_bact. 1 hit.
PROSITEiPS00323. RIBOSOMAL_S19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62660-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRSLKKGVF VDDHLLEKVL ELNAKGEKRL IKTWSRRSTI VPEMVGHTIA
60 70 80 90
VYNGKQHVPV YITENMVGHK LGEFAPTRTY RGHGKEAKAT KKK
Length:93
Mass (Da):10,581
Last modified:January 23, 2007 - v2
Checksum:iD77C0FC2D4D2DE04
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81666.1.
RefSeqiYP_005293.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81666; AAS81666; TT_C1324.
GeneIDi2775749.
KEGGitth:TTC1324.
PATRICi23953055. VBITheThe54392_1316.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81666.1.
RefSeqiYP_005293.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VOQX-ray11.50S2-81[»]
1VOSX-ray11.50S2-81[»]
1VOVX-ray11.50S2-81[»]
2OW8X-ray3.71t1-93[»]
4KVBX-ray4.20S1-93[»]
4V4IX-ray3.71t1-93[»]
4V4JX-ray3.83t1-93[»]
4V63X-ray3.21S1-93[»]
4V67X-ray3.00S1-93[»]
4V7PX-ray3.62S4-81[»]
4V83X-ray3.50S4-81[»]
4V84X-ray3.40S4-81[»]
4V9JX-ray3.86S4-82[»]
4V9KX-ray3.50S4-82[»]
4V9LX-ray3.50S4-82[»]
4V9MX-ray4.00S4-82[»]
4V9NX-ray3.40S4-81[»]
4V9QX-ray3.40S4-81[»]
4W29X-ray3.80S4-82[»]
ProteinModelPortaliP62660.
SMRiP62660. Positions 2-88.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1324.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81666; AAS81666; TT_C1324.
GeneIDi2775749.
KEGGitth:TTC1324.
PATRICi23953055. VBITheThe54392_1316.

Phylogenomic databases

eggNOGiCOG0185.
KOiK02965.
OMAiVHNGRQF.
OrthoDBiEOG61S365.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1339-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62660.

Family and domain databases

Gene3Di3.30.860.10. 1 hit.
HAMAPiMF_00531. Ribosomal_S19.
InterProiIPR002222. Ribosomal_S19.
IPR005732. Ribosomal_S19_bac-type.
IPR020934. Ribosomal_S19_CS.
IPR023575. Ribosomal_S19_SF.
[Graphical view]
PANTHERiPTHR11880. PTHR11880. 1 hit.
PfamiPF00203. Ribosomal_S19. 1 hit.
[Graphical view]
PIRSFiPIRSF002144. Ribosomal_S19. 1 hit.
PRINTSiPR00975. RIBOSOMALS19.
SUPFAMiSSF54570. SSF54570. 1 hit.
TIGRFAMsiTIGR01050. rpsS_bact. 1 hit.
PROSITEiPS00323. RIBOSOMAL_S19. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS19_THET2
AccessioniPrimary (citable) accession number: P62660
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: February 4, 2015
This is version 86 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.