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Protein

30S ribosomal protein S19

Gene

rpsS

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S19
Gene namesi
Name:rpsS
Synonyms:rps19
Ordered Locus Names:TT_C1324
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001299262 – 9330S ribosomal protein S19Add BLAST92

Proteomic databases

PRIDEiP62660.

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1324.

Structurei

Secondary structure

193
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 8Combined sources3
Helixi13 – 25Combined sources13
Beta strandi30 – 32Combined sources3
Beta strandi37 – 39Combined sources3
Helixi42 – 44Combined sources3
Beta strandi48 – 52Combined sources5
Beta strandi54 – 56Combined sources3
Beta strandi57 – 61Combined sources5
Beta strandi63 – 66Combined sources4
Beta strandi68 – 71Combined sources4
Helixi72 – 74Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20S1-93[»]
4V4GX-ray11.50S2-81[»]
4V4IX-ray3.71t1-93[»]
4V4JX-ray3.83t1-93[»]
4V63X-ray3.21AS/CS1-93[»]
4V67X-ray3.00AS/CS1-93[»]
4V7PX-ray3.62AS/DS4-81[»]
4V83X-ray3.50AS/CS4-81[»]
4V84X-ray3.40AS/CS4-81[»]
4V9JX-ray3.86AS/CS4-82[»]
4V9KX-ray3.50AS/CS4-82[»]
4V9LX-ray3.50AS/CS4-82[»]
4V9MX-ray4.00AS/CS4-82[»]
4V9NX-ray3.40AS/CS4-81[»]
4V9QX-ray3.40BS/DS4-81[»]
4W29X-ray3.80AS/CS4-82[»]
4XEJX-ray3.80AS19/BS194-81[»]
5J4DX-ray3.10BB/GD1-93[»]
ProteinModelPortaliP62660.
SMRiP62660.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62660.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105K7S. Bacteria.
COG0185. LUCA.
KOiK02965.
OMAiVHNGRQF.

Family and domain databases

Gene3Di3.30.860.10. 1 hit.
HAMAPiMF_00531. Ribosomal_S19. 1 hit.
InterProiView protein in InterPro
IPR002222. Ribosomal_S19.
IPR005732. Ribosomal_S19_bac-type.
IPR020934. Ribosomal_S19_CS.
IPR023575. Ribosomal_S19_SF.
PANTHERiPTHR11880. PTHR11880. 1 hit.
PfamiView protein in Pfam
PF00203. Ribosomal_S19. 1 hit.
PIRSFiPIRSF002144. Ribosomal_S19. 1 hit.
PRINTSiPR00975. RIBOSOMALS19.
SUPFAMiSSF54570. SSF54570. 1 hit.
TIGRFAMsiTIGR01050. rpsS_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00323. RIBOSOMAL_S19. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62660-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRSLKKGVF VDDHLLEKVL ELNAKGEKRL IKTWSRRSTI VPEMVGHTIA
60 70 80 90
VYNGKQHVPV YITENMVGHK LGEFAPTRTY RGHGKEAKAT KKK
Length:93
Mass (Da):10,581
Last modified:January 23, 2007 - v2
Checksum:iD77C0FC2D4D2DE04
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81666.1.
RefSeqiWP_011173711.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81666; AAS81666; TT_C1324.
KEGGitth:TT_C1324.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS19_THET2
AccessioniPrimary (citable) accession number: P62660
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 102 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families