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P62658

- RS17_THET2

UniProt

P62658 - RS17_THET2

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Protein

30S ribosomal protein S17

Gene

rpsQ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1334-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S17UniRule annotation
Gene namesi
Name:rpsQUniRule annotation
Synonyms:rps17UniRule annotation
Ordered Locus Names:TT_C1319
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 10510430S ribosomal protein S17PRO_0000128491Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 128Combined sources
Beta strandi18 – 269Combined sources
Turni30 – 323Combined sources
Beta strandi37 – 459Combined sources
Beta strandi56 – 616Combined sources
Beta strandi66 – 683Combined sources
Beta strandi71 – 799Combined sources
Helixi82 – 9514Combined sources
Turni96 – 983Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OW8X-ray3.71r1-105[»]
2QNHX-ray3.83r1-105[»]
3D5AX-ray3.21Q1-105[»]
3D5CX-ray3.21Q1-105[»]
3F1EX-ray3.00Q1-105[»]
3F1GX-ray3.00Q1-105[»]
3MR8X-ray3.62Q2-100[»]
3MS0X-ray3.62Q2-100[»]
3PYNX-ray3.50Q2-100[»]
3PYQX-ray3.50Q2-100[»]
3PYSX-ray3.40Q2-100[»]
3PYUX-ray3.40Q2-100[»]
4KBTX-ray3.86Q2-101[»]
4KBVX-ray3.86Q2-101[»]
4KCYX-ray3.50Q2-101[»]
4KD0X-ray3.50Q2-101[»]
4KD8X-ray3.50Q2-101[»]
4KDAX-ray3.50Q2-101[»]
4KDGX-ray4.00Q2-101[»]
4KDJX-ray4.00Q2-101[»]
4KFHX-ray3.40Q2-100[»]
4KFKX-ray3.40Q2-100[»]
4L6KX-ray3.40Q2-100[»]
4L6MX-ray3.40Q2-100[»]
ProteinModelPortaliP62658.
SMRiP62658. Positions 2-105.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62658.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0186.
KOiK02961.
OMAiHDEKNET.
OrthoDBiEOG63JRH2.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01345_B. Ribosomal_S17_B.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03635. S17_bact. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62658-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK
60 70 80 90 100
YKLGDVVEII ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYQSLSK

RGGKA
Length:105
Mass (Da):12,297
Last modified:January 23, 2007 - v2
Checksum:i6089596D57478FBD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81661.1.
RefSeqiYP_005288.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81661; AAS81661; TT_C1319.
GeneIDi2774573.
KEGGitth:TTC1319.
PATRICi23953045. VBITheThe54392_1311.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81661.1 .
RefSeqi YP_005288.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2OW8 X-ray 3.71 r 1-105 [» ]
2QNH X-ray 3.83 r 1-105 [» ]
3D5A X-ray 3.21 Q 1-105 [» ]
3D5C X-ray 3.21 Q 1-105 [» ]
3F1E X-ray 3.00 Q 1-105 [» ]
3F1G X-ray 3.00 Q 1-105 [» ]
3MR8 X-ray 3.62 Q 2-100 [» ]
3MS0 X-ray 3.62 Q 2-100 [» ]
3PYN X-ray 3.50 Q 2-100 [» ]
3PYQ X-ray 3.50 Q 2-100 [» ]
3PYS X-ray 3.40 Q 2-100 [» ]
3PYU X-ray 3.40 Q 2-100 [» ]
4KBT X-ray 3.86 Q 2-101 [» ]
4KBV X-ray 3.86 Q 2-101 [» ]
4KCY X-ray 3.50 Q 2-101 [» ]
4KD0 X-ray 3.50 Q 2-101 [» ]
4KD8 X-ray 3.50 Q 2-101 [» ]
4KDA X-ray 3.50 Q 2-101 [» ]
4KDG X-ray 4.00 Q 2-101 [» ]
4KDJ X-ray 4.00 Q 2-101 [» ]
4KFH X-ray 3.40 Q 2-100 [» ]
4KFK X-ray 3.40 Q 2-100 [» ]
4L6K X-ray 3.40 Q 2-100 [» ]
4L6M X-ray 3.40 Q 2-100 [» ]
ProteinModelPortali P62658.
SMRi P62658. Positions 2-105.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81661 ; AAS81661 ; TT_C1319 .
GeneIDi 2774573.
KEGGi tth:TTC1319.
PATRICi 23953045. VBITheThe54392_1311.

Phylogenomic databases

eggNOGi COG0186.
KOi K02961.
OMAi HDEKNET.
OrthoDBi EOG63JRH2.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1334-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62658.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_01345_B. Ribosomal_S17_B.
InterProi IPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view ]
PANTHERi PTHR10744. PTHR10744. 1 hit.
Pfami PF00366. Ribosomal_S17. 1 hit.
[Graphical view ]
PRINTSi PR00973. RIBOSOMALS17.
ProDomi PD001295. Ribosomal_S17. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR03635. S17_bact. 1 hit.
PROSITEi PS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS17_THET2
AccessioniPrimary (citable) accession number: P62658
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3