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P62658

- RS17_THET2

UniProt

P62658 - RS17_THET2

Protein

30S ribosomal protein S17

Gene

rpsQ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1334-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S17UniRule annotation
    Gene namesi
    Name:rpsQUniRule annotation
    Synonyms:rps17UniRule annotation
    Ordered Locus Names:TT_C1319
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 10510430S ribosomal protein S17PRO_0000128491Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit.UniRule annotation

    Structurei

    Secondary structure

    1
    105
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 128
    Beta strandi18 – 269
    Turni30 – 323
    Beta strandi37 – 459
    Beta strandi56 – 616
    Beta strandi66 – 683
    Beta strandi71 – 799
    Helixi82 – 9514
    Turni96 – 983

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2OW8X-ray3.71r1-105[»]
    2QNHX-ray3.83r1-105[»]
    3D5AX-ray3.21Q1-105[»]
    3D5CX-ray3.21Q1-105[»]
    3F1EX-ray3.00Q1-105[»]
    3F1GX-ray3.00Q1-105[»]
    3MR8X-ray3.62Q2-100[»]
    3MS0X-ray3.62Q2-100[»]
    3PYNX-ray3.50Q2-100[»]
    3PYQX-ray3.50Q2-100[»]
    3PYSX-ray3.40Q2-100[»]
    3PYUX-ray3.40Q2-100[»]
    4KBTX-ray3.86Q2-101[»]
    4KBVX-ray3.86Q2-101[»]
    4KCYX-ray3.50Q2-101[»]
    4KD0X-ray3.50Q2-101[»]
    4KD8X-ray3.50Q2-101[»]
    4KDAX-ray3.50Q2-101[»]
    4KDGX-ray4.00Q2-101[»]
    4KDJX-ray4.00Q2-101[»]
    4KFHX-ray3.40Q2-100[»]
    4KFKX-ray3.40Q2-100[»]
    4L6KX-ray3.40Q2-100[»]
    4L6MX-ray3.40Q2-100[»]
    ProteinModelPortaliP62658.
    SMRiP62658. Positions 2-105.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62658.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S17P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0186.
    KOiK02961.
    OMAiHDEKNET.
    OrthoDBiEOG63JRH2.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_01345_B. Ribosomal_S17_B.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR000266. Ribosomal_S17.
    IPR019984. Ribosomal_S17_bac-type.
    IPR019979. Ribosomal_S17_CS.
    [Graphical view]
    PANTHERiPTHR10744. PTHR10744. 1 hit.
    PfamiPF00366. Ribosomal_S17. 1 hit.
    [Graphical view]
    PRINTSiPR00973. RIBOSOMALS17.
    ProDomiPD001295. Ribosomal_S17. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR03635. S17_bact. 1 hit.
    PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62658-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK    50
    YKLGDVVEII ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYQSLSK 100
    RGGKA 105
    Length:105
    Mass (Da):12,297
    Last modified:January 23, 2007 - v2
    Checksum:i6089596D57478FBD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81661.1.
    RefSeqiYP_005288.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81661; AAS81661; TT_C1319.
    GeneIDi2774573.
    KEGGitth:TTC1319.
    PATRICi23953045. VBITheThe54392_1311.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81661.1 .
    RefSeqi YP_005288.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2OW8 X-ray 3.71 r 1-105 [» ]
    2QNH X-ray 3.83 r 1-105 [» ]
    3D5A X-ray 3.21 Q 1-105 [» ]
    3D5C X-ray 3.21 Q 1-105 [» ]
    3F1E X-ray 3.00 Q 1-105 [» ]
    3F1G X-ray 3.00 Q 1-105 [» ]
    3MR8 X-ray 3.62 Q 2-100 [» ]
    3MS0 X-ray 3.62 Q 2-100 [» ]
    3PYN X-ray 3.50 Q 2-100 [» ]
    3PYQ X-ray 3.50 Q 2-100 [» ]
    3PYS X-ray 3.40 Q 2-100 [» ]
    3PYU X-ray 3.40 Q 2-100 [» ]
    4KBT X-ray 3.86 Q 2-101 [» ]
    4KBV X-ray 3.86 Q 2-101 [» ]
    4KCY X-ray 3.50 Q 2-101 [» ]
    4KD0 X-ray 3.50 Q 2-101 [» ]
    4KD8 X-ray 3.50 Q 2-101 [» ]
    4KDA X-ray 3.50 Q 2-101 [» ]
    4KDG X-ray 4.00 Q 2-101 [» ]
    4KDJ X-ray 4.00 Q 2-101 [» ]
    4KFH X-ray 3.40 Q 2-100 [» ]
    4KFK X-ray 3.40 Q 2-100 [» ]
    4L6K X-ray 3.40 Q 2-100 [» ]
    4L6M X-ray 3.40 Q 2-100 [» ]
    ProteinModelPortali P62658.
    SMRi P62658. Positions 2-105.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81661 ; AAS81661 ; TT_C1319 .
    GeneIDi 2774573.
    KEGGi tth:TTC1319.
    PATRICi 23953045. VBITheThe54392_1311.

    Phylogenomic databases

    eggNOGi COG0186.
    KOi K02961.
    OMAi HDEKNET.
    OrthoDBi EOG63JRH2.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1334-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62658.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_01345_B. Ribosomal_S17_B.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR000266. Ribosomal_S17.
    IPR019984. Ribosomal_S17_bac-type.
    IPR019979. Ribosomal_S17_CS.
    [Graphical view ]
    PANTHERi PTHR10744. PTHR10744. 1 hit.
    Pfami PF00366. Ribosomal_S17. 1 hit.
    [Graphical view ]
    PRINTSi PR00973. RIBOSOMALS17.
    ProDomi PD001295. Ribosomal_S17. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR03635. S17_bact. 1 hit.
    PROSITEi PS00056. RIBOSOMAL_S17. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS17_THET2
    AccessioniPrimary (citable) accession number: P62658
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 75 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3