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Protein

30S ribosomal protein S17

Gene

rpsQ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1334-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S17UniRule annotation
Gene namesi
Name:rpsQUniRule annotation
Synonyms:rps17UniRule annotation
Ordered Locus Names:TT_C1319
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 10510430S ribosomal protein S17PRO_0000128491Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1319.

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 128Combined sources
Beta strandi18 – 269Combined sources
Turni30 – 323Combined sources
Beta strandi37 – 459Combined sources
Beta strandi56 – 616Combined sources
Beta strandi66 – 683Combined sources
Beta strandi71 – 799Combined sources
Helixi82 – 9514Combined sources
Turni96 – 983Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71r1-105[»]
4V4JX-ray3.83r1-105[»]
4V63X-ray3.21AQ/CQ1-105[»]
4V67X-ray3.00AQ/CQ1-105[»]
4V7PX-ray3.62AQ/DQ2-100[»]
4V83X-ray3.50AQ/CQ2-100[»]
4V84X-ray3.40AQ/CQ2-100[»]
4V9JX-ray3.86AQ/CQ2-101[»]
4V9KX-ray3.50AQ/CQ2-101[»]
4V9LX-ray3.50AQ/CQ2-101[»]
4V9MX-ray4.00AQ/CQ2-101[»]
4V9NX-ray3.40AQ/CQ2-100[»]
4V9QX-ray3.40BQ/DQ2-100[»]
4W29X-ray3.80AQ/CQ2-101[»]
4XEJX-ray3.80AS17/BS172-100[»]
ProteinModelPortaliP62658.
SMRiP62658. Positions 2-105.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62658.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K87. Bacteria.
COG0186. LUCA.
KOiK02961.
OMAiWIVVKDS.
OrthoDBiEOG63JRH2.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01345_B. Ribosomal_S17_B.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03635. uS17_bact. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62658-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK
60 70 80 90 100
YKLGDVVEII ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYQSLSK

RGGKA
Length:105
Mass (Da):12,297
Last modified:January 23, 2007 - v2
Checksum:i6089596D57478FBD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81661.1.
RefSeqiWP_011173708.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81661; AAS81661; TT_C1319.
KEGGitth:TTC1319.
PATRICi23953045. VBITheThe54392_1311.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81661.1.
RefSeqiWP_011173708.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71r1-105[»]
4V4JX-ray3.83r1-105[»]
4V63X-ray3.21AQ/CQ1-105[»]
4V67X-ray3.00AQ/CQ1-105[»]
4V7PX-ray3.62AQ/DQ2-100[»]
4V83X-ray3.50AQ/CQ2-100[»]
4V84X-ray3.40AQ/CQ2-100[»]
4V9JX-ray3.86AQ/CQ2-101[»]
4V9KX-ray3.50AQ/CQ2-101[»]
4V9LX-ray3.50AQ/CQ2-101[»]
4V9MX-ray4.00AQ/CQ2-101[»]
4V9NX-ray3.40AQ/CQ2-100[»]
4V9QX-ray3.40BQ/DQ2-100[»]
4W29X-ray3.80AQ/CQ2-101[»]
4XEJX-ray3.80AS17/BS172-100[»]
ProteinModelPortaliP62658.
SMRiP62658. Positions 2-105.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1319.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81661; AAS81661; TT_C1319.
KEGGitth:TTC1319.
PATRICi23953045. VBITheThe54392_1311.

Phylogenomic databases

eggNOGiENOG4105K87. Bacteria.
COG0186. LUCA.
KOiK02961.
OMAiWIVVKDS.
OrthoDBiEOG63JRH2.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1334-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62658.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01345_B. Ribosomal_S17_B.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03635. uS17_bact. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS17_THET2
AccessioniPrimary (citable) accession number: P62658
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 11, 2015
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.