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Protein

30S ribosomal protein S17

Gene

rpsQ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S17UniRule annotation
Gene namesi
Name:rpsQUniRule annotation
Synonyms:rps17UniRule annotation
Ordered Locus Names:TT_C1319
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001284912 – 10530S ribosomal protein S17Add BLAST104

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC1319.

Structurei

Secondary structure

1105
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 12Combined sources8
Beta strandi18 – 26Combined sources9
Turni30 – 32Combined sources3
Beta strandi37 – 45Combined sources9
Beta strandi56 – 61Combined sources6
Beta strandi66 – 68Combined sources3
Beta strandi71 – 79Combined sources9
Helixi82 – 95Combined sources14
Turni96 – 98Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4IX-ray3.71r1-105[»]
4V4JX-ray3.83r1-105[»]
4V63X-ray3.21AQ/CQ1-105[»]
4V67X-ray3.00AQ/CQ1-105[»]
4V7PX-ray3.62AQ/DQ2-100[»]
4V83X-ray3.50AQ/CQ2-100[»]
4V84X-ray3.40AQ/CQ2-100[»]
4V9JX-ray3.86AQ/CQ2-101[»]
4V9KX-ray3.50AQ/CQ2-101[»]
4V9LX-ray3.50AQ/CQ2-101[»]
4V9MX-ray4.00AQ/CQ2-101[»]
4V9NX-ray3.40AQ/CQ2-100[»]
4V9QX-ray3.40BQ/DQ2-100[»]
4W29X-ray3.80AQ/CQ2-101[»]
4XEJX-ray3.80AS17/BS172-100[»]
5J4DX-ray3.10ED/ZA1-105[»]
ProteinModelPortaliP62658.
SMRiP62658.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62658.

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS17 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K87. Bacteria.
COG0186. LUCA.
KOiK02961.
OMAiHPMYGKF.

Family and domain databases

HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR019984. Ribosomal_S17.
IPR000266. Ribosomal_S17/S11.
IPR019979. Ribosomal_S17_CS.
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiView protein in Pfam
PF00366. Ribosomal_S17. 1 hit.
PRINTSiPR00973. RIBOSOMALS17.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295. Ribosomal_S17. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03635. uS17_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00056. RIBOSOMAL_S17. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62658-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK
60 70 80 90 100
YKLGDVVEII ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYQSLSK

RGGKA
Length:105
Mass (Da):12,297
Last modified:January 23, 2007 - v2
Checksum:i6089596D57478FBD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81661.1.
RefSeqiWP_011173708.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81661; AAS81661; TT_C1319.
KEGGitth:TT_C1319.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS17_THET2
AccessioniPrimary (citable) accession number: P62658
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 96 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families