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Protein

30S ribosomal protein S15

Gene

rpsO

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.UniRule annotation
Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-785-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S15UniRule annotation
Gene namesi
Name:rpsOUniRule annotation
Synonyms:rps15UniRule annotation
Ordered Locus Names:TT_C0773
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 898830S ribosomal protein S15PRO_0000115573Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.UniRule annotation

Protein-protein interaction databases

STRINGi262724.TTC0773.

Structurei

Secondary structure

1
89
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 1511Combined sources
Beta strandi17 – 204Combined sources
Helixi25 – 4319Combined sources
Helixi50 – 7324Combined sources
Helixi75 – 8511Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20O1-89[»]
4V4GX-ray11.50O2-89[»]
4V4IX-ray3.71p1-89[»]
4V4JX-ray3.83p1-89[»]
4V63X-ray3.21AO/CO1-89[»]
4V67X-ray3.00AO/CO1-89[»]
4V7PX-ray3.62AO/DO2-89[»]
4V83X-ray3.50AO/CO2-89[»]
4V84X-ray3.40AO/CO2-89[»]
4V9JX-ray3.86AO/CO2-89[»]
4V9KX-ray3.50AO/CO2-89[»]
4V9LX-ray3.50AO/CO2-89[»]
4V9MX-ray4.00AO/CO2-89[»]
4V9NX-ray3.40AO/CO2-89[»]
4V9QX-ray3.40BO/DO2-89[»]
4W29X-ray3.80AO/CO2-89[»]
4XEJX-ray3.80AS15/BS152-89[»]
ProteinModelPortaliP62657.
SMRiP62657. Positions 2-89.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62657.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S15P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0184.
KOiK02956.
OMAiTEHFKSH.
OrthoDBiEOG6B368J.

Family and domain databases

Gene3Di1.10.287.10. 1 hit.
HAMAPiMF_01343_B. Ribosomal_S15_B.
InterProiIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PfamiPF00312. Ribosomal_S15. 1 hit.
[Graphical view]
SUPFAMiSSF47060. SSF47060. 1 hit.
TIGRFAMsiTIGR00952. S15_bact. 1 hit.
PROSITEiPS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62657-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPITKEEKQK VIQEFARFPG DTGSTEVQVA LLTLRINRLS EHLKVHKKDH
60 70 80
HSHRGLLMMV GQRRRLLRYL QREDPERYRA LIEKLGIRG
Length:89
Mass (Da):10,554
Last modified:January 23, 2007 - v2
Checksum:i9DB7E1C533DBF340
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81119.1.
RefSeqiWP_008632621.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81119; AAS81119; TT_C0773.
KEGGitth:TTC0773.
PATRICi23951951. VBITheThe54392_0770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81119.1.
RefSeqiWP_008632621.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20O1-89[»]
4V4GX-ray11.50O2-89[»]
4V4IX-ray3.71p1-89[»]
4V4JX-ray3.83p1-89[»]
4V63X-ray3.21AO/CO1-89[»]
4V67X-ray3.00AO/CO1-89[»]
4V7PX-ray3.62AO/DO2-89[»]
4V83X-ray3.50AO/CO2-89[»]
4V84X-ray3.40AO/CO2-89[»]
4V9JX-ray3.86AO/CO2-89[»]
4V9KX-ray3.50AO/CO2-89[»]
4V9LX-ray3.50AO/CO2-89[»]
4V9MX-ray4.00AO/CO2-89[»]
4V9NX-ray3.40AO/CO2-89[»]
4V9QX-ray3.40BO/DO2-89[»]
4W29X-ray3.80AO/CO2-89[»]
4XEJX-ray3.80AS15/BS152-89[»]
ProteinModelPortaliP62657.
SMRiP62657. Positions 2-89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0773.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81119; AAS81119; TT_C0773.
KEGGitth:TTC0773.
PATRICi23951951. VBITheThe54392_0770.

Phylogenomic databases

eggNOGiCOG0184.
KOiK02956.
OMAiTEHFKSH.
OrthoDBiEOG6B368J.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-785-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62657.

Family and domain databases

Gene3Di1.10.287.10. 1 hit.
HAMAPiMF_01343_B. Ribosomal_S15_B.
InterProiIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PfamiPF00312. Ribosomal_S15. 1 hit.
[Graphical view]
SUPFAMiSSF47060. SSF47060. 1 hit.
TIGRFAMsiTIGR00952. S15_bact. 1 hit.
PROSITEiPS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS15_THET2
AccessioniPrimary (citable) accession number: P62657
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: July 22, 2015
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.