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P62655

- RS13_THET2

UniProt

P62655 - RS13_THET2

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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites (By similarity).By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1318-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13
Gene namesi
Name:rpsM
Synonyms:rps13
Ordered Locus Names:TT_C1303
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 12612530S ribosomal protein S13PRO_0000132159Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1303.

Structurei

Secondary structure

1
126
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 73Combined sources
Beta strandi12 – 143Combined sources
Helixi15 – 206Combined sources
Helixi27 – 359Combined sources
Turni36 – 383Combined sources
Beta strandi41 – 477Combined sources
Helixi50 – 6314Combined sources
Helixi67 – 8418Combined sources
Helixi87 – 904Combined sources
Turni91 – 955Combined sources
Beta strandi98 – 1003Combined sources
Beta strandi103 – 1053Combined sources
Helixi108 – 1114Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83n1-126[»]
2R1Gelectron microscopy12.50I2-126[»]
3D5AX-ray3.21M1-126[»]
3D5CX-ray3.21M1-126[»]
3F1EX-ray3.00M1-126[»]
3F1GX-ray3.00M1-126[»]
3MR8X-ray3.62M2-118[»]
3MS0X-ray3.62M2-118[»]
3PYNX-ray3.50M2-117[»]
3PYQX-ray3.50M2-117[»]
3PYSX-ray3.40M2-117[»]
3PYUX-ray3.40M2-117[»]
4KBTX-ray3.86M2-126[»]
4KBVX-ray3.86M2-126[»]
4KCYX-ray3.50M2-126[»]
4KD0X-ray3.50M2-126[»]
4KD8X-ray3.50M2-126[»]
4KDAX-ray3.50M2-126[»]
4KDGX-ray4.00M2-126[»]
4KDJX-ray4.00M2-126[»]
4KFHX-ray3.40M2-118[»]
4KFKX-ray3.40M2-118[»]
4KVBX-ray4.20M1-126[»]
4L6KX-ray3.40M2-117[»]
4L6MX-ray3.40M2-118[»]
ProteinModelPortaliP62655.
SMRiP62655. Positions 2-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62655.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S13P family.Curated

Phylogenomic databases

eggNOGiCOG0099.
KOiK02952.
OMAiNDEEAHA.
OrthoDBiEOG618R01.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18.
InterProiIPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view]
PfamiPF00416. Ribosomal_S13. 1 hit.
[Graphical view]
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03631. bact_S13. 1 hit.
PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62655-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE
60 70 80 90 100
AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG
110 120
QRTRTNARTR KGPRKTVAGK KKAPRK
Length:126
Mass (Da):14,305
Last modified:January 23, 2007 - v2
Checksum:iC20831747B312415
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81645.1.
RefSeqiYP_005272.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81645; AAS81645; TT_C1303.
GeneIDi2774607.
KEGGitth:TTC1303.
PATRICi23953013. VBITheThe54392_1295.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81645.1 .
RefSeqi YP_005272.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QNH X-ray 3.83 n 1-126 [» ]
2R1G electron microscopy 12.50 I 2-126 [» ]
3D5A X-ray 3.21 M 1-126 [» ]
3D5C X-ray 3.21 M 1-126 [» ]
3F1E X-ray 3.00 M 1-126 [» ]
3F1G X-ray 3.00 M 1-126 [» ]
3MR8 X-ray 3.62 M 2-118 [» ]
3MS0 X-ray 3.62 M 2-118 [» ]
3PYN X-ray 3.50 M 2-117 [» ]
3PYQ X-ray 3.50 M 2-117 [» ]
3PYS X-ray 3.40 M 2-117 [» ]
3PYU X-ray 3.40 M 2-117 [» ]
4KBT X-ray 3.86 M 2-126 [» ]
4KBV X-ray 3.86 M 2-126 [» ]
4KCY X-ray 3.50 M 2-126 [» ]
4KD0 X-ray 3.50 M 2-126 [» ]
4KD8 X-ray 3.50 M 2-126 [» ]
4KDA X-ray 3.50 M 2-126 [» ]
4KDG X-ray 4.00 M 2-126 [» ]
4KDJ X-ray 4.00 M 2-126 [» ]
4KFH X-ray 3.40 M 2-118 [» ]
4KFK X-ray 3.40 M 2-118 [» ]
4KVB X-ray 4.20 M 1-126 [» ]
4L6K X-ray 3.40 M 2-117 [» ]
4L6M X-ray 3.40 M 2-118 [» ]
ProteinModelPortali P62655.
SMRi P62655. Positions 2-126.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1303.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81645 ; AAS81645 ; TT_C1303 .
GeneIDi 2774607.
KEGGi tth:TTC1303.
PATRICi 23953013. VBITheThe54392_1295.

Phylogenomic databases

eggNOGi COG0099.
KOi K02952.
OMAi NDEEAHA.
OrthoDBi EOG618R01.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1318-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62655.

Family and domain databases

Gene3Di 4.10.910.10. 1 hit.
HAMAPi MF_01315. Ribosomal_S13_S18.
InterProi IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view ]
Pfami PF00416. Ribosomal_S13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMi SSF46946. SSF46946. 1 hit.
TIGRFAMsi TIGR03631. bact_S13. 1 hit.
PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS13_THET2
AccessioniPrimary (citable) accession number: P62655
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3