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P62655 (RS13_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S13
Gene names
Name:rpsM
Synonyms:rps13
Ordered Locus Names:TT_C1303
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length126 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity. HAMAP-Rule MF_01315

Subunit structure

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity.

Sequence similarities

Belongs to the ribosomal protein S13P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
tRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

tRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 12612530S ribosomal protein S13 HAMAP-Rule MF_01315
PRO_0000132159

Secondary structure

........................ 126
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P62655 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: C20831747B312415

FASTA12614,305
        10         20         30         40         50         60 
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE AEVVRLREYV 

        70         80         90        100        110        120 
ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG QRTRTNARTR KGPRKTVAGK 


KKAPRK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81645.1.
RefSeqYP_005272.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83n1-126[»]
2R1Gelectron microscopy12.50I2-126[»]
3D5AX-ray3.21M1-126[»]
3D5CX-ray3.21M1-126[»]
3F1EX-ray3.00M1-126[»]
3F1GX-ray3.00M1-126[»]
3MR8X-ray3.62M2-118[»]
3MS0X-ray3.62M2-118[»]
3PYNX-ray3.50M2-117[»]
3PYQX-ray3.50M2-117[»]
3PYSX-ray3.40M2-117[»]
3PYUX-ray3.40M2-117[»]
4KBTX-ray3.86M2-126[»]
4KBVX-ray3.86M2-126[»]
4KCYX-ray3.50M2-126[»]
4KD0X-ray3.50M2-126[»]
4KD8X-ray3.50M2-126[»]
4KDAX-ray3.50M2-126[»]
4KDGX-ray4.00M2-126[»]
4KDJX-ray4.00M2-126[»]
4KFHX-ray3.40M2-118[»]
4KFKX-ray3.40M2-118[»]
4L6KX-ray3.40M2-117[»]
4L6MX-ray3.40M2-118[»]
ProteinModelPortalP62655.
SMRP62655. Positions 2-126.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING262724.TTC1303.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81645; AAS81645; TT_C1303.
GeneID2774607.
KEGGtth:TTC1303.
PATRIC23953013. VBITheThe54392_1295.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0099.
KOK02952.
OMAREVAMNI.
OrthoDBEOG618R01.
ProtClustDBPRK05179.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-1318-MONOMER.

Family and domain databases

Gene3D4.10.910.10. 1 hit.
HAMAPMF_01315. Ribosomal_S13_S18.
InterProIPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view]
PfamPF00416. Ribosomal_S13. 1 hit.
[Graphical view]
PIRSFPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMSSF46946. SSF46946. 1 hit.
TIGRFAMsTIGR03631. bact_S13. 1 hit.
PROSITEPS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP62655.

Entry information

Entry nameRS13_THET2
AccessionPrimary (citable) accession number: P62655
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 72 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references