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P62655

- RS13_THET2

UniProt

P62655 - RS13_THET2

Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1318-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S13
    Gene namesi
    Name:rpsM
    Synonyms:rps13
    Ordered Locus Names:TT_C1303
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 12612530S ribosomal protein S13PRO_0000132159Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity.By similarity

    Protein-protein interaction databases

    STRINGi262724.TTC1303.

    Structurei

    Secondary structure

    1
    126
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 73
    Beta strandi12 – 143
    Helixi15 – 206
    Helixi27 – 359
    Turni36 – 383
    Beta strandi41 – 477
    Helixi50 – 6314
    Helixi67 – 8418
    Helixi87 – 904
    Turni91 – 955
    Beta strandi98 – 1003
    Beta strandi103 – 1053
    Helixi108 – 1114

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83n1-126[»]
    2R1Gelectron microscopy12.50I2-126[»]
    3D5AX-ray3.21M1-126[»]
    3D5CX-ray3.21M1-126[»]
    3F1EX-ray3.00M1-126[»]
    3F1GX-ray3.00M1-126[»]
    3MR8X-ray3.62M2-118[»]
    3MS0X-ray3.62M2-118[»]
    3PYNX-ray3.50M2-117[»]
    3PYQX-ray3.50M2-117[»]
    3PYSX-ray3.40M2-117[»]
    3PYUX-ray3.40M2-117[»]
    4KBTX-ray3.86M2-126[»]
    4KBVX-ray3.86M2-126[»]
    4KCYX-ray3.50M2-126[»]
    4KD0X-ray3.50M2-126[»]
    4KD8X-ray3.50M2-126[»]
    4KDAX-ray3.50M2-126[»]
    4KDGX-ray4.00M2-126[»]
    4KDJX-ray4.00M2-126[»]
    4KFHX-ray3.40M2-118[»]
    4KFKX-ray3.40M2-118[»]
    4KVBX-ray4.20M1-126[»]
    4L6KX-ray3.40M2-117[»]
    4L6MX-ray3.40M2-118[»]
    ProteinModelPortaliP62655.
    SMRiP62655. Positions 2-126.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62655.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S13P family.Curated

    Phylogenomic databases

    eggNOGiCOG0099.
    KOiK02952.
    OMAiNDEEAHA.
    OrthoDBiEOG618R01.

    Family and domain databases

    Gene3Di4.10.910.10. 1 hit.
    HAMAPiMF_01315. Ribosomal_S13_S18.
    InterProiIPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view]
    PfamiPF00416. Ribosomal_S13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMiSSF46946. SSF46946. 1 hit.
    TIGRFAMsiTIGR03631. bact_S13. 1 hit.
    PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62655-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE    50
    AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG 100
    QRTRTNARTR KGPRKTVAGK KKAPRK 126
    Length:126
    Mass (Da):14,305
    Last modified:January 23, 2007 - v2
    Checksum:iC20831747B312415
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81645.1.
    RefSeqiYP_005272.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81645; AAS81645; TT_C1303.
    GeneIDi2774607.
    KEGGitth:TTC1303.
    PATRICi23953013. VBITheThe54392_1295.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81645.1 .
    RefSeqi YP_005272.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 n 1-126 [» ]
    2R1G electron microscopy 12.50 I 2-126 [» ]
    3D5A X-ray 3.21 M 1-126 [» ]
    3D5C X-ray 3.21 M 1-126 [» ]
    3F1E X-ray 3.00 M 1-126 [» ]
    3F1G X-ray 3.00 M 1-126 [» ]
    3MR8 X-ray 3.62 M 2-118 [» ]
    3MS0 X-ray 3.62 M 2-118 [» ]
    3PYN X-ray 3.50 M 2-117 [» ]
    3PYQ X-ray 3.50 M 2-117 [» ]
    3PYS X-ray 3.40 M 2-117 [» ]
    3PYU X-ray 3.40 M 2-117 [» ]
    4KBT X-ray 3.86 M 2-126 [» ]
    4KBV X-ray 3.86 M 2-126 [» ]
    4KCY X-ray 3.50 M 2-126 [» ]
    4KD0 X-ray 3.50 M 2-126 [» ]
    4KD8 X-ray 3.50 M 2-126 [» ]
    4KDA X-ray 3.50 M 2-126 [» ]
    4KDG X-ray 4.00 M 2-126 [» ]
    4KDJ X-ray 4.00 M 2-126 [» ]
    4KFH X-ray 3.40 M 2-118 [» ]
    4KFK X-ray 3.40 M 2-118 [» ]
    4KVB X-ray 4.20 M 1-126 [» ]
    4L6K X-ray 3.40 M 2-117 [» ]
    4L6M X-ray 3.40 M 2-118 [» ]
    ProteinModelPortali P62655.
    SMRi P62655. Positions 2-126.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1303.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81645 ; AAS81645 ; TT_C1303 .
    GeneIDi 2774607.
    KEGGi tth:TTC1303.
    PATRICi 23953013. VBITheThe54392_1295.

    Phylogenomic databases

    eggNOGi COG0099.
    KOi K02952.
    OMAi NDEEAHA.
    OrthoDBi EOG618R01.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1318-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62655.

    Family and domain databases

    Gene3Di 4.10.910.10. 1 hit.
    HAMAPi MF_01315. Ribosomal_S13_S18.
    InterProi IPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view ]
    Pfami PF00416. Ribosomal_S13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMi SSF46946. SSF46946. 1 hit.
    TIGRFAMsi TIGR03631. bact_S13. 1 hit.
    PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS13_THET2
    AccessioniPrimary (citable) accession number: P62655
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 75 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3