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Protein

30S ribosomal protein S11

Gene

rpsK

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Located on the upper part of the platform of the 30S subunit, where it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S11
Gene namesi
Name:rpsK
Synonyms:rps11
Ordered Locus Names:TT_C1302
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001232452 – 12930S ribosomal protein S11Add BLAST128

Proteomic databases

PRIDEiP62654

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to the C-terminus of IF-3; however exactly how IF-3 interacts with the 30S subunit is unclear.

Protein-protein interaction databases

STRINGi262724.TTC1302

Structurei

Secondary structure

1129
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi15 – 23Combined sources9
Beta strandi28 – 33Combined sources6
Beta strandi35 – 37Combined sources3
Beta strandi39 – 44Combined sources6
Helixi45 – 48Combined sources4
Helixi54 – 56Combined sources3
Helixi58 – 74Combined sources17
Beta strandi79 – 86Combined sources8
Helixi91 – 100Combined sources10
Beta strandi103 – 110Combined sources8
Beta strandi123 – 125Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20K1-129[»]
4V4IX-ray3.71l1-129[»]
4V4JX-ray3.83l1-129[»]
4V63X-ray3.21AK/CK1-129[»]
4V67X-ray3.00AK/CK1-129[»]
4V7PX-ray3.62AK/DK11-129[»]
4V83X-ray3.50AK/CK11-129[»]
4V84X-ray3.40AK/CK11-129[»]
4V9JX-ray3.86AK/CK11-129[»]
4V9KX-ray3.50AK/CK11-129[»]
4V9LX-ray3.50AK/CK11-129[»]
4V9MX-ray4.00AK/CK11-129[»]
4V9NX-ray3.40AK/CK11-124[»]
4V9QX-ray3.40BK/DK11-124[»]
4W29X-ray3.80AK/CK11-129[»]
4XEJX-ray3.80AS11/BS1111-124[»]
5J4DX-ray3.10TA/YC1-129[»]
ProteinModelPortaliP62654
SMRiP62654
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62654

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108UHH Bacteria
COG0100 LUCA
KOiK02948
OMAiKVYVKGP

Family and domain databases

Gene3Di3.30.420.80, 1 hit
HAMAPiMF_01310 Ribosomal_S11, 1 hit
InterProiView protein in InterPro
IPR001971 Ribosomal_S11
IPR019981 Ribosomal_S11_bac-type
IPR018102 Ribosomal_S11_CS
IPR036967 Ribosomal_S11_sf
PANTHERiPTHR11759 PTHR11759, 1 hit
PfamiView protein in Pfam
PF00411 Ribosomal_S11, 1 hit
PIRSFiPIRSF002131 Ribosomal_S11, 1 hit
TIGRFAMsiTIGR03632 uS11_bact, 1 hit
PROSITEiView protein in PROSITE
PS00054 RIBOSOMAL_S11, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62654-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY
60 70 80 90 100
KGSRKGTPYA AQLAALDAAK KAMAYGMQSV DVIVRGTGAG REQAIRALQA
110 120
SGLQVKSIVD DTPVPHNGCR PKKKFRKAS
Length:129
Mass (Da):13,713
Last modified:January 23, 2007 - v2
Checksum:i028E047E6DCE3CA2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA Translation: AAS81644.1
RefSeqiWP_008633365.1, NC_005835.1

Genome annotation databases

EnsemblBacteriaiAAS81644; AAS81644; TT_C1302
KEGGitth:TT_C1302

Similar proteinsi

Entry informationi

Entry nameiRS11_THET2
AccessioniPrimary (citable) accession number: P62654
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 93 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
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