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Protein

30S ribosomal protein S11

Gene

rpsK

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Located on the upper part of the platform of the 30S subunit, where it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (By similarity).By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1317-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S11
Gene namesi
Name:rpsK
Synonyms:rps11
Ordered Locus Names:TT_C1302
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 12912830S ribosomal protein S11PRO_0000123245Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to the C-terminus of IF-3; however exactly how IF-3 interacts with the 30S subunit is unclear.

Protein-protein interaction databases

STRINGi262724.TTC1302.

Structurei

Secondary structure

1
129
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi15 – 239Combined sources
Beta strandi28 – 336Combined sources
Beta strandi35 – 373Combined sources
Beta strandi39 – 446Combined sources
Helixi45 – 484Combined sources
Helixi54 – 563Combined sources
Helixi58 – 7417Combined sources
Beta strandi79 – 868Combined sources
Helixi91 – 10010Combined sources
Beta strandi103 – 1108Combined sources
Beta strandi123 – 1253Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20K1-129[»]
4V4IX-ray3.71l1-129[»]
4V4JX-ray3.83l1-129[»]
4V63X-ray3.21AK/CK1-129[»]
4V67X-ray3.00AK/CK1-129[»]
4V7PX-ray3.62AK/DK11-129[»]
4V83X-ray3.50AK/CK11-129[»]
4V84X-ray3.40AK/CK11-129[»]
4V9JX-ray3.86AK/CK11-129[»]
4V9KX-ray3.50AK/CK11-129[»]
4V9LX-ray3.50AK/CK11-129[»]
4V9MX-ray4.00AK/CK11-129[»]
4V9NX-ray3.40AK/CK11-124[»]
4V9QX-ray3.40BK/DK11-124[»]
4W29X-ray3.80AK/CK11-129[»]
ProteinModelPortaliP62654.
SMRiP62654. Positions 7-129.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62654.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S11P family.Curated

Phylogenomic databases

eggNOGiCOG0100.
KOiK02948.
OMAiAYVHASY.
OrthoDBiEOG6ZSPF3.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11.
InterProiIPR001971. Ribosomal_S11.
IPR019981. Ribosomal_S11_bac-type.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03632. bact_S11. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62654-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY
60 70 80 90 100
KGSRKGTPYA AQLAALDAAK KAMAYGMQSV DVIVRGTGAG REQAIRALQA
110 120
SGLQVKSIVD DTPVPHNGCR PKKKFRKAS
Length:129
Mass (Da):13,713
Last modified:January 23, 2007 - v2
Checksum:i028E047E6DCE3CA2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81644.1.
RefSeqiYP_005271.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81644; AAS81644; TT_C1302.
GeneIDi2774735.
KEGGitth:TTC1302.
PATRICi23953011. VBITheThe54392_1294.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81644.1.
RefSeqiYP_005271.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20K1-129[»]
4V4IX-ray3.71l1-129[»]
4V4JX-ray3.83l1-129[»]
4V63X-ray3.21AK/CK1-129[»]
4V67X-ray3.00AK/CK1-129[»]
4V7PX-ray3.62AK/DK11-129[»]
4V83X-ray3.50AK/CK11-129[»]
4V84X-ray3.40AK/CK11-129[»]
4V9JX-ray3.86AK/CK11-129[»]
4V9KX-ray3.50AK/CK11-129[»]
4V9LX-ray3.50AK/CK11-129[»]
4V9MX-ray4.00AK/CK11-129[»]
4V9NX-ray3.40AK/CK11-124[»]
4V9QX-ray3.40BK/DK11-124[»]
4W29X-ray3.80AK/CK11-129[»]
ProteinModelPortaliP62654.
SMRiP62654. Positions 7-129.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1302.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81644; AAS81644; TT_C1302.
GeneIDi2774735.
KEGGitth:TTC1302.
PATRICi23953011. VBITheThe54392_1294.

Phylogenomic databases

eggNOGiCOG0100.
KOiK02948.
OMAiAYVHASY.
OrthoDBiEOG6ZSPF3.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1317-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62654.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11.
InterProiIPR001971. Ribosomal_S11.
IPR019981. Ribosomal_S11_bac-type.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03632. bact_S11. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS11_THET2
AccessioniPrimary (citable) accession number: P62654
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: March 4, 2015
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.