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P62654

- RS11_THET2

UniProt

P62654 - RS11_THET2

Protein

30S ribosomal protein S11

Gene

rpsK

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Located on the upper part of the platform of the 30S subunit, where it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome By similarity.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1317-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S11
    Gene namesi
    Name:rpsK
    Synonyms:rps11
    Ordered Locus Names:TT_C1302
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 12912830S ribosomal protein S11PRO_0000123245Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to the C-terminus of IF-3; however exactly how IF-3 interacts with the 30S subunit is unclear.

    Protein-protein interaction databases

    STRINGi262724.TTC1302.

    Structurei

    Secondary structure

    1
    129
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi15 – 239
    Beta strandi28 – 336
    Beta strandi35 – 373
    Beta strandi39 – 446
    Helixi45 – 484
    Helixi54 – 563
    Helixi58 – 7417
    Beta strandi79 – 868
    Helixi91 – 10010
    Beta strandi103 – 1108
    Beta strandi123 – 1253

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83l1-129[»]
    3D5AX-ray3.21K1-129[»]
    3D5CX-ray3.21K1-129[»]
    3F1EX-ray3.00K1-129[»]
    3F1GX-ray3.00K1-129[»]
    3MR8X-ray3.62K11-129[»]
    3MS0X-ray3.62K11-129[»]
    3PYNX-ray3.50K11-129[»]
    3PYQX-ray3.50K11-129[»]
    3PYSX-ray3.40K11-129[»]
    3PYUX-ray3.40K11-129[»]
    4KBTX-ray3.86K11-129[»]
    4KBVX-ray3.86K11-129[»]
    4KCYX-ray3.50K11-129[»]
    4KD0X-ray3.50K11-129[»]
    4KD8X-ray3.50K11-129[»]
    4KDAX-ray3.50K11-129[»]
    4KDGX-ray4.00K11-129[»]
    4KDJX-ray4.00K11-129[»]
    4KFHX-ray3.40K11-124[»]
    4KFKX-ray3.40K11-124[»]
    4KVBX-ray4.20K1-129[»]
    4L6KX-ray3.40K11-124[»]
    4L6MX-ray3.40K11-124[»]
    ProteinModelPortaliP62654.
    SMRiP62654. Positions 7-129.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62654.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S11P family.Curated

    Phylogenomic databases

    eggNOGiCOG0100.
    KOiK02948.
    OMAiPYASQIT.
    OrthoDBiEOG6ZSPF3.

    Family and domain databases

    Gene3Di3.30.420.80. 1 hit.
    HAMAPiMF_01310. Ribosomal_S11.
    InterProiIPR001971. Ribosomal_S11.
    IPR019981. Ribosomal_S11_bac-type.
    IPR018102. Ribosomal_S11_CS.
    [Graphical view]
    PANTHERiPTHR11759. PTHR11759. 1 hit.
    PfamiPF00411. Ribosomal_S11. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
    TIGRFAMsiTIGR03632. bact_S11. 1 hit.
    PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62654-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY    50
    KGSRKGTPYA AQLAALDAAK KAMAYGMQSV DVIVRGTGAG REQAIRALQA 100
    SGLQVKSIVD DTPVPHNGCR PKKKFRKAS 129
    Length:129
    Mass (Da):13,713
    Last modified:January 23, 2007 - v2
    Checksum:i028E047E6DCE3CA2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81644.1.
    RefSeqiYP_005271.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81644; AAS81644; TT_C1302.
    GeneIDi2774735.
    KEGGitth:TTC1302.
    PATRICi23953011. VBITheThe54392_1294.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81644.1 .
    RefSeqi YP_005271.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 l 1-129 [» ]
    3D5A X-ray 3.21 K 1-129 [» ]
    3D5C X-ray 3.21 K 1-129 [» ]
    3F1E X-ray 3.00 K 1-129 [» ]
    3F1G X-ray 3.00 K 1-129 [» ]
    3MR8 X-ray 3.62 K 11-129 [» ]
    3MS0 X-ray 3.62 K 11-129 [» ]
    3PYN X-ray 3.50 K 11-129 [» ]
    3PYQ X-ray 3.50 K 11-129 [» ]
    3PYS X-ray 3.40 K 11-129 [» ]
    3PYU X-ray 3.40 K 11-129 [» ]
    4KBT X-ray 3.86 K 11-129 [» ]
    4KBV X-ray 3.86 K 11-129 [» ]
    4KCY X-ray 3.50 K 11-129 [» ]
    4KD0 X-ray 3.50 K 11-129 [» ]
    4KD8 X-ray 3.50 K 11-129 [» ]
    4KDA X-ray 3.50 K 11-129 [» ]
    4KDG X-ray 4.00 K 11-129 [» ]
    4KDJ X-ray 4.00 K 11-129 [» ]
    4KFH X-ray 3.40 K 11-124 [» ]
    4KFK X-ray 3.40 K 11-124 [» ]
    4KVB X-ray 4.20 K 1-129 [» ]
    4L6K X-ray 3.40 K 11-124 [» ]
    4L6M X-ray 3.40 K 11-124 [» ]
    ProteinModelPortali P62654.
    SMRi P62654. Positions 7-129.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1302.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81644 ; AAS81644 ; TT_C1302 .
    GeneIDi 2774735.
    KEGGi tth:TTC1302.
    PATRICi 23953011. VBITheThe54392_1294.

    Phylogenomic databases

    eggNOGi COG0100.
    KOi K02948.
    OMAi PYASQIT.
    OrthoDBi EOG6ZSPF3.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1317-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62654.

    Family and domain databases

    Gene3Di 3.30.420.80. 1 hit.
    HAMAPi MF_01310. Ribosomal_S11.
    InterProi IPR001971. Ribosomal_S11.
    IPR019981. Ribosomal_S11_bac-type.
    IPR018102. Ribosomal_S11_CS.
    [Graphical view ]
    PANTHERi PTHR11759. PTHR11759. 1 hit.
    Pfami PF00411. Ribosomal_S11. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002131. Ribosomal_S11. 1 hit.
    TIGRFAMsi TIGR03632. bact_S11. 1 hit.
    PROSITEi PS00054. RIBOSOMAL_S11. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS11_THET2
    AccessioniPrimary (citable) accession number: P62654
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 72 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3