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P62653

- RS10_THET2

UniProt

P62653 - RS10_THET2

Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Involved in the binding of tRNA to the ribosomes.UniRule annotation

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro
    2. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1344-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S10UniRule annotation
    Gene namesi
    Name:rpsJUniRule annotation
    Synonyms:rps10UniRule annotation
    Ordered Locus Names:TT_C1329
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 10510430S ribosomal protein S10PRO_0000146619Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi262724.TTC1329.

    Structurei

    Secondary structure

    1
    105
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 118
    Helixi13 – 2816
    Beta strandi30 – 323
    Beta strandi34 – 396
    Beta strandi43 – 497
    Beta strandi51 – 555
    Beta strandi57 – 593
    Beta strandi61 – 688
    Beta strandi70 – 767
    Helixi79 – 846
    Turni85 – 873
    Beta strandi92 – 998

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83k1-105[»]
    3D5AX-ray3.21J1-105[»]
    3D5CX-ray3.21J1-105[»]
    3F1EX-ray3.00J1-105[»]
    3F1GX-ray3.00J1-105[»]
    3MR8X-ray3.62J3-100[»]
    3MS0X-ray3.62J3-100[»]
    3PYNX-ray3.50J3-100[»]
    3PYQX-ray3.50J3-100[»]
    3PYSX-ray3.40J3-100[»]
    3PYUX-ray3.40J3-100[»]
    4KBTX-ray3.86J3-101[»]
    4KBVX-ray3.86J3-101[»]
    4KCYX-ray3.50J3-101[»]
    4KD0X-ray3.50J3-101[»]
    4KD8X-ray3.50J3-101[»]
    4KDAX-ray3.50J3-101[»]
    4KDGX-ray4.00J3-101[»]
    4KDJX-ray4.00J3-101[»]
    4KFHX-ray3.40J3-100[»]
    4KFKX-ray3.40J3-100[»]
    4KVBX-ray4.20J1-105[»]
    4L6KX-ray3.40J3-100[»]
    4L6MX-ray3.40J3-100[»]
    ProteinModelPortaliP62653.
    SMRiP62653. Positions 3-100.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62653.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S10P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0051.
    KOiK02946.
    OMAiTNKYKNG.
    OrthoDBiEOG6VXFHB.

    Family and domain databases

    Gene3Di3.30.70.600. 1 hit.
    HAMAPiMF_00508. Ribosomal_S10.
    InterProiIPR001848. Ribosomal_S10.
    IPR018268. Ribosomal_S10_CS.
    IPR027486. Ribosomal_S10_dom.
    [Graphical view]
    PANTHERiPTHR11700. PTHR11700. 1 hit.
    PfamiPF00338. Ribosomal_S10. 1 hit.
    [Graphical view]
    PRINTSiPR00971. RIBOSOMALS10.
    SUPFAMiSSF54999. SSF54999. 1 hit.
    TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
    PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62653-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI    50
    RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT 100
    VGGGR 105
    Length:105
    Mass (Da):11,930
    Last modified:January 23, 2007 - v2
    Checksum:iE769CB9EFE2C4EF4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81671.1.
    RefSeqiYP_005298.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
    GeneIDi2775866.
    KEGGitth:TTC1329.
    PATRICi23953065. VBITheThe54392_1321.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81671.1 .
    RefSeqi YP_005298.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 k 1-105 [» ]
    3D5A X-ray 3.21 J 1-105 [» ]
    3D5C X-ray 3.21 J 1-105 [» ]
    3F1E X-ray 3.00 J 1-105 [» ]
    3F1G X-ray 3.00 J 1-105 [» ]
    3MR8 X-ray 3.62 J 3-100 [» ]
    3MS0 X-ray 3.62 J 3-100 [» ]
    3PYN X-ray 3.50 J 3-100 [» ]
    3PYQ X-ray 3.50 J 3-100 [» ]
    3PYS X-ray 3.40 J 3-100 [» ]
    3PYU X-ray 3.40 J 3-100 [» ]
    4KBT X-ray 3.86 J 3-101 [» ]
    4KBV X-ray 3.86 J 3-101 [» ]
    4KCY X-ray 3.50 J 3-101 [» ]
    4KD0 X-ray 3.50 J 3-101 [» ]
    4KD8 X-ray 3.50 J 3-101 [» ]
    4KDA X-ray 3.50 J 3-101 [» ]
    4KDG X-ray 4.00 J 3-101 [» ]
    4KDJ X-ray 4.00 J 3-101 [» ]
    4KFH X-ray 3.40 J 3-100 [» ]
    4KFK X-ray 3.40 J 3-100 [» ]
    4KVB X-ray 4.20 J 1-105 [» ]
    4L6K X-ray 3.40 J 3-100 [» ]
    4L6M X-ray 3.40 J 3-100 [» ]
    ProteinModelPortali P62653.
    SMRi P62653. Positions 3-100.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1329.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81671 ; AAS81671 ; TT_C1329 .
    GeneIDi 2775866.
    KEGGi tth:TTC1329.
    PATRICi 23953065. VBITheThe54392_1321.

    Phylogenomic databases

    eggNOGi COG0051.
    KOi K02946.
    OMAi TNKYKNG.
    OrthoDBi EOG6VXFHB.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1344-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62653.

    Family and domain databases

    Gene3Di 3.30.70.600. 1 hit.
    HAMAPi MF_00508. Ribosomal_S10.
    InterProi IPR001848. Ribosomal_S10.
    IPR018268. Ribosomal_S10_CS.
    IPR027486. Ribosomal_S10_dom.
    [Graphical view ]
    PANTHERi PTHR11700. PTHR11700. 1 hit.
    Pfami PF00338. Ribosomal_S10. 1 hit.
    [Graphical view ]
    PRINTSi PR00971. RIBOSOMALS10.
    SUPFAMi SSF54999. SSF54999. 1 hit.
    TIGRFAMsi TIGR01049. rpsJ_bact. 1 hit.
    PROSITEi PS00361. RIBOSOMAL_S10. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS10_THET2
    AccessioniPrimary (citable) accession number: P62653
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 75 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3