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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro
  2. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1344-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
Ordered Locus Names:TT_C1329
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 10510430S ribosomal protein S10PRO_0000146619Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 118Combined sources
Helixi13 – 2816Combined sources
Beta strandi30 – 323Combined sources
Beta strandi34 – 396Combined sources
Beta strandi43 – 497Combined sources
Beta strandi51 – 555Combined sources
Beta strandi57 – 593Combined sources
Beta strandi61 – 688Combined sources
Beta strandi70 – 767Combined sources
Helixi79 – 846Combined sources
Turni85 – 873Combined sources
Beta strandi92 – 998Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
ProteinModelPortaliP62653.
SMRiP62653. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62653.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0051.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62653-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 22, 2007 - v2
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiYP_005298.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TTC1329.
PATRICi23953065. VBITheThe54392_1321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiYP_005298.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
ProteinModelPortaliP62653.
SMRiP62653. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TTC1329.
PATRICi23953065. VBITheThe54392_1321.

Phylogenomic databases

eggNOGiCOG0051.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1344-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62653.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS10_THET2
AccessioniPrimary (citable) accession number: P62653
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 18, 2004
Last sequence update: January 22, 2007
Last modified: March 31, 2015
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.