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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
Ordered Locus Names:TT_C1329
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001466192 – 10530S ribosomal protein S10Add BLAST104

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1105
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 11Combined sources8
Helixi13 – 28Combined sources16
Beta strandi30 – 32Combined sources3
Beta strandi34 – 39Combined sources6
Beta strandi43 – 49Combined sources7
Beta strandi51 – 55Combined sources5
Beta strandi57 – 59Combined sources3
Beta strandi61 – 68Combined sources8
Beta strandi70 – 76Combined sources7
Helixi79 – 84Combined sources6
Turni85 – 87Combined sources3
Beta strandi92 – 99Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
4XEJX-ray3.80AS10/BS103-100[»]
5J4DX-ray3.10SA/XC1-105[»]
ProteinModelPortaliP62653.
SMRiP62653.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62653.

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS10 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
KOiK02946.
OMAiREQFQLC.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiView protein in InterPro
IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiView protein in Pfam
PF00338. Ribosomal_S10. 1 hit.
PRINTSiPR00971. RIBOSOMALS10.
SMARTiView protein in SMART
SM01403. Ribosomal_S10. 1 hit.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00361. RIBOSOMAL_S10. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62653-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v2
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiWP_008633424.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TT_C1329.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS10_THET2
AccessioniPrimary (citable) accession number: P62653
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 95 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families