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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
Ordered Locus Names:TT_C1329
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001466192 – 10530S ribosomal protein S10Add BLAST104

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1105
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 11Combined sources8
Helixi13 – 28Combined sources16
Beta strandi30 – 32Combined sources3
Beta strandi34 – 39Combined sources6
Beta strandi43 – 49Combined sources7
Beta strandi51 – 55Combined sources5
Beta strandi57 – 59Combined sources3
Beta strandi61 – 68Combined sources8
Beta strandi70 – 76Combined sources7
Helixi79 – 84Combined sources6
Turni85 – 87Combined sources3
Beta strandi92 – 99Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
4XEJX-ray3.80AS10/BS103-100[»]
5J4DX-ray3.10SA/XC1-105[»]
ProteinModelPortaliP62653.
SMRiP62653.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62653.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
KOiK02946.
OMAiKIRRYTV.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62653-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v2
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiWP_008633424.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TT_C1329.
PATRICi23953065. VBITheThe54392_1321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiWP_008633424.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
4XEJX-ray3.80AS10/BS103-100[»]
5J4DX-ray3.10SA/XC1-105[»]
ProteinModelPortaliP62653.
SMRiP62653.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TT_C1329.
PATRICi23953065. VBITheThe54392_1321.

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
KOiK02946.
OMAiKIRRYTV.

Miscellaneous databases

EvolutionaryTraceiP62653.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS10_THET2
AccessioniPrimary (citable) accession number: P62653
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.