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P62653

- RS10_THET2

UniProt

P62653 - RS10_THET2

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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro
  2. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1344-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
Ordered Locus Names:TT_C1329
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 10510430S ribosomal protein S10PRO_0000146619Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 118Combined sources
Helixi13 – 2816Combined sources
Beta strandi30 – 323Combined sources
Beta strandi34 – 396Combined sources
Beta strandi43 – 497Combined sources
Beta strandi51 – 555Combined sources
Beta strandi57 – 593Combined sources
Beta strandi61 – 688Combined sources
Beta strandi70 – 767Combined sources
Helixi79 – 846Combined sources
Turni85 – 873Combined sources
Beta strandi92 – 998Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83k1-105[»]
3D5AX-ray3.21J1-105[»]
3D5CX-ray3.21J1-105[»]
3F1EX-ray3.00J1-105[»]
3F1GX-ray3.00J1-105[»]
3MR8X-ray3.62J3-100[»]
3MS0X-ray3.62J3-100[»]
3PYNX-ray3.50J3-100[»]
3PYQX-ray3.50J3-100[»]
3PYSX-ray3.40J3-100[»]
3PYUX-ray3.40J3-100[»]
4KBTX-ray3.86J3-101[»]
4KBVX-ray3.86J3-101[»]
4KCYX-ray3.50J3-101[»]
4KD0X-ray3.50J3-101[»]
4KD8X-ray3.50J3-101[»]
4KDAX-ray3.50J3-101[»]
4KDGX-ray4.00J3-101[»]
4KDJX-ray4.00J3-101[»]
4KFHX-ray3.40J3-100[»]
4KFKX-ray3.40J3-100[»]
4KVBX-ray4.20J1-105[»]
4L6KX-ray3.40J3-100[»]
4L6MX-ray3.40J3-100[»]
ProteinModelPortaliP62653.
SMRiP62653. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62653.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0051.
KOiK02946.
OMAiTNKYKNG.
OrthoDBiEOG6VXFHB.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62653-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v2
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiYP_005298.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
GeneIDi2775866.
KEGGitth:TTC1329.
PATRICi23953065. VBITheThe54392_1321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1 .
RefSeqi YP_005298.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QNH X-ray 3.83 k 1-105 [» ]
3D5A X-ray 3.21 J 1-105 [» ]
3D5C X-ray 3.21 J 1-105 [» ]
3F1E X-ray 3.00 J 1-105 [» ]
3F1G X-ray 3.00 J 1-105 [» ]
3MR8 X-ray 3.62 J 3-100 [» ]
3MS0 X-ray 3.62 J 3-100 [» ]
3PYN X-ray 3.50 J 3-100 [» ]
3PYQ X-ray 3.50 J 3-100 [» ]
3PYS X-ray 3.40 J 3-100 [» ]
3PYU X-ray 3.40 J 3-100 [» ]
4KBT X-ray 3.86 J 3-101 [» ]
4KBV X-ray 3.86 J 3-101 [» ]
4KCY X-ray 3.50 J 3-101 [» ]
4KD0 X-ray 3.50 J 3-101 [» ]
4KD8 X-ray 3.50 J 3-101 [» ]
4KDA X-ray 3.50 J 3-101 [» ]
4KDG X-ray 4.00 J 3-101 [» ]
4KDJ X-ray 4.00 J 3-101 [» ]
4KFH X-ray 3.40 J 3-100 [» ]
4KFK X-ray 3.40 J 3-100 [» ]
4KVB X-ray 4.20 J 1-105 [» ]
4L6K X-ray 3.40 J 3-100 [» ]
4L6M X-ray 3.40 J 3-100 [» ]
ProteinModelPortali P62653.
SMRi P62653. Positions 3-100.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC1329.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81671 ; AAS81671 ; TT_C1329 .
GeneIDi 2775866.
KEGGi tth:TTC1329.
PATRICi 23953065. VBITheThe54392_1321.

Phylogenomic databases

eggNOGi COG0051.
KOi K02946.
OMAi TNKYKNG.
OrthoDBi EOG6VXFHB.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1344-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62653.

Family and domain databases

Gene3Di 3.30.70.600. 1 hit.
HAMAPi MF_00508. Ribosomal_S10.
InterProi IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view ]
PANTHERi PTHR11700. PTHR11700. 1 hit.
Pfami PF00338. Ribosomal_S10. 1 hit.
[Graphical view ]
PRINTSi PR00971. RIBOSOMALS10.
SUPFAMi SSF54999. SSF54999. 1 hit.
TIGRFAMsi TIGR01049. rpsJ_bact. 1 hit.
PROSITEi PS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS10_THET2
AccessioniPrimary (citable) accession number: P62653
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3