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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1344-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Synonyms:rps10UniRule annotation
Ordered Locus Names:TT_C1329
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 10510430S ribosomal protein S10PRO_0000146619Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi262724.TTC1329.

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 118Combined sources
Helixi13 – 2816Combined sources
Beta strandi30 – 323Combined sources
Beta strandi34 – 396Combined sources
Beta strandi43 – 497Combined sources
Beta strandi51 – 555Combined sources
Beta strandi57 – 593Combined sources
Beta strandi61 – 688Combined sources
Beta strandi70 – 767Combined sources
Helixi79 – 846Combined sources
Turni85 – 873Combined sources
Beta strandi92 – 998Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
4XEJX-ray3.80AS10/BS103-100[»]
ProteinModelPortaliP62653.
SMRiP62653. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62653.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62653-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v2
Checksum:iE769CB9EFE2C4EF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiWP_008633424.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TTC1329.
PATRICi23953065. VBITheThe54392_1321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81671.1.
RefSeqiWP_008633424.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20J1-105[»]
4V4JX-ray3.83k1-105[»]
4V63X-ray3.21AJ/CJ1-105[»]
4V67X-ray3.00AJ/CJ1-105[»]
4V7PX-ray3.62AJ/DJ3-100[»]
4V83X-ray3.50AJ/CJ3-100[»]
4V84X-ray3.40AJ/CJ3-100[»]
4V9JX-ray3.86AJ/CJ3-101[»]
4V9KX-ray3.50AJ/CJ3-101[»]
4V9LX-ray3.50AJ/CJ3-101[»]
4V9MX-ray4.00AJ/CJ3-101[»]
4V9NX-ray3.40AJ/CJ3-100[»]
4V9QX-ray3.40BJ/DJ3-100[»]
4W29X-ray3.80AJ/CJ3-101[»]
4XEJX-ray3.80AS10/BS103-100[»]
ProteinModelPortaliP62653.
SMRiP62653. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81671; AAS81671; TT_C1329.
KEGGitth:TTC1329.
PATRICi23953065. VBITheThe54392_1321.

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1344-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62653.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS10_THET2
AccessioniPrimary (citable) accession number: P62653
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: May 11, 2016
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.