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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32
Gene namesi
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TT_C0050
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001724262 – 6050S ribosomal protein L32Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0050.

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi13 – 19Combined sources7
Helixi20 – 22Combined sources3
Beta strandi34 – 40Combined sources7
Turni47 – 49Combined sources3
Beta strandi51 – 53Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TWVmodel-P1-60[»]
4V4IX-ray3.71Y1-60[»]
4V4JX-ray3.83Y1-60[»]
4V63X-ray3.21B5/D51-60[»]
4V67X-ray3.00B5/D51-60[»]
4V7PX-ray3.62B2/C22-60[»]
4V83X-ray3.50B2/D22-53[»]
4V84X-ray3.40B2/D22-53[»]
4V9JX-ray3.86B5/D52-60[»]
4V9KX-ray3.50B5/D52-60[»]
4V9LX-ray3.50B5/D52-60[»]
4V9MX-ray4.00B5/D52-60[»]
4V9NX-ray3.40B5/D52-53[»]
4V9QX-ray3.40A2/C22-53[»]
4W29X-ray3.80B5/D52-60[»]
4XEJX-ray3.80AL32/BL322-53[»]
5J4DX-ray3.10CA/HC1-60[»]
ProteinModelPortaliP62652.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62652.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L32P family.Curated

Phylogenomic databases

eggNOGiENOG41067VY. Bacteria.
COG0333. LUCA.
KOiK02911.
OMAiELKLAHH.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32. 1 hit.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62652-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKHPVPKKK TSKARRDARR SHHALTPPIL VPCPECKAMK PPHTVCPECG
60
YYAGRKVLEV
Length:60
Mass (Da):6,717
Last modified:January 23, 2007 - v2
Checksum:i9599DCB90FF2DE45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002823 Genomic DNA. Translation: BAA19663.1.
AE017221 Genomic DNA. Translation: AAS80398.1.
PIRiT11853.
RefSeqiWP_011172507.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80398; AAS80398; TT_C0050.
KEGGitth:TT_C0050.
PATRICi23950483. VBITheThe54392_0050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002823 Genomic DNA. Translation: BAA19663.1.
AE017221 Genomic DNA. Translation: AAS80398.1.
PIRiT11853.
RefSeqiWP_011172507.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TWVmodel-P1-60[»]
4V4IX-ray3.71Y1-60[»]
4V4JX-ray3.83Y1-60[»]
4V63X-ray3.21B5/D51-60[»]
4V67X-ray3.00B5/D51-60[»]
4V7PX-ray3.62B2/C22-60[»]
4V83X-ray3.50B2/D22-53[»]
4V84X-ray3.40B2/D22-53[»]
4V9JX-ray3.86B5/D52-60[»]
4V9KX-ray3.50B5/D52-60[»]
4V9LX-ray3.50B5/D52-60[»]
4V9MX-ray4.00B5/D52-60[»]
4V9NX-ray3.40B5/D52-53[»]
4V9QX-ray3.40A2/C22-53[»]
4W29X-ray3.80B5/D52-60[»]
4XEJX-ray3.80AL32/BL322-53[»]
5J4DX-ray3.10CA/HC1-60[»]
ProteinModelPortaliP62652.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0050.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80398; AAS80398; TT_C0050.
KEGGitth:TT_C0050.
PATRICi23950483. VBITheThe54392_0050.

Phylogenomic databases

eggNOGiENOG41067VY. Bacteria.
COG0333. LUCA.
KOiK02911.
OMAiELKLAHH.

Miscellaneous databases

EvolutionaryTraceiP62652.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32. 1 hit.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL32_THET2
AccessioniPrimary (citable) accession number: P62652
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.