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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.By similarity

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-50-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32
Gene namesi
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TT_C0050
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 605950S ribosomal protein L32PRO_0000172426Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0050.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 197Combined sources
Helixi20 – 223Combined sources
Beta strandi34 – 407Combined sources
Turni47 – 493Combined sources
Beta strandi51 – 533Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWVmodel-P1-60[»]
4KDKX-ray4.0052-60[»]
4L6JX-ray3.4022-53[»]
4L6LX-ray3.4022-53[»]
4V4IX-ray3.71Y1-60[»]
4V4JX-ray3.83Y1-60[»]
4V63X-ray3.2151-60[»]
4V67X-ray3.0051-60[»]
4V7PX-ray3.6222-60[»]
4V83X-ray3.5022-53[»]
4V84X-ray3.4022-53[»]
4V9JX-ray3.8652-60[»]
4V9KX-ray3.5052-60[»]
4V9LX-ray3.5052-60[»]
4V9MX-ray4.0052-60[»]
4V9NX-ray3.4052-53[»]
4W29X-ray3.8052-60[»]
ProteinModelPortaliP62652.
SMRiP62652. Positions 5-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62652.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L32P family.Curated

Phylogenomic databases

eggNOGiCOG0333.
KOiK02911.
OMAiRTHFKLA.
OrthoDBiEOG6VMTT4.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62652-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKHPVPKKK TSKARRDARR SHHALTPPIL VPCPECKAMK PPHTVCPECG
60
YYAGRKVLEV
Length:60
Mass (Da):6,717
Last modified:January 23, 2007 - v2
Checksum:i9599DCB90FF2DE45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002823 Genomic DNA. Translation: BAA19663.1.
AE017221 Genomic DNA. Translation: AAS80398.1.
PIRiT11853.
RefSeqiYP_004025.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80398; AAS80398; TT_C0050.
GeneIDi2776410.
KEGGitth:TTC0050.
PATRICi23950483. VBITheThe54392_0050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002823 Genomic DNA. Translation: BAA19663.1.
AE017221 Genomic DNA. Translation: AAS80398.1.
PIRiT11853.
RefSeqiYP_004025.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TWVmodel-P1-60[»]
4KDKX-ray4.0052-60[»]
4L6JX-ray3.4022-53[»]
4L6LX-ray3.4022-53[»]
4V4IX-ray3.71Y1-60[»]
4V4JX-ray3.83Y1-60[»]
4V63X-ray3.2151-60[»]
4V67X-ray3.0051-60[»]
4V7PX-ray3.6222-60[»]
4V83X-ray3.5022-53[»]
4V84X-ray3.4022-53[»]
4V9JX-ray3.8652-60[»]
4V9KX-ray3.5052-60[»]
4V9LX-ray3.5052-60[»]
4V9MX-ray4.0052-60[»]
4V9NX-ray3.4052-53[»]
4W29X-ray3.8052-60[»]
ProteinModelPortaliP62652.
SMRiP62652. Positions 5-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0050.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS80398; AAS80398; TT_C0050.
GeneIDi2776410.
KEGGitth:TTC0050.
PATRICi23950483. VBITheThe54392_0050.

Phylogenomic databases

eggNOGiCOG0333.
KOiK02911.
OMAiRTHFKLA.
OrthoDBiEOG6VMTT4.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-50-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62652.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Fusion with ribosomal protein L32 increased the in vivo thermostability of kanamycin nucleotidyltransferase in Thermus thermophilus."
    Maseda H., Hoshino T.
    J. Ferment. Bioeng. 82:525-530(1996)
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL32_THET2
AccessioniPrimary (citable) accession number: P62652
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: February 4, 2015
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.