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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32
Gene namesi
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TT_C0050
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001724262 – 6050S ribosomal protein L32Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0050.

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi13 – 19Combined sources7
Helixi20 – 22Combined sources3
Beta strandi34 – 40Combined sources7
Turni47 – 49Combined sources3
Beta strandi51 – 53Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TWVmodel-P1-60[»]
4V4IX-ray3.71Y1-60[»]
4V4JX-ray3.83Y1-60[»]
4V63X-ray3.21B5/D51-60[»]
4V67X-ray3.00B5/D51-60[»]
4V7PX-ray3.62B2/C22-60[»]
4V83X-ray3.50B2/D22-53[»]
4V84X-ray3.40B2/D22-53[»]
4V9JX-ray3.86B5/D52-60[»]
4V9KX-ray3.50B5/D52-60[»]
4V9LX-ray3.50B5/D52-60[»]
4V9MX-ray4.00B5/D52-60[»]
4V9NX-ray3.40B5/D52-53[»]
4V9QX-ray3.40A2/C22-53[»]
4W29X-ray3.80B5/D52-60[»]
4XEJX-ray3.80AL32/BL322-53[»]
5J4DX-ray3.10CA/HC1-60[»]
ProteinModelPortaliP62652.
SMRiP62652.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62652.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41067VY. Bacteria.
COG0333. LUCA.
KOiK02911.
OMAiHRACRHC.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32. 1 hit.
InterProiView protein in InterPro
IPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF01783. Ribosomal_L32p. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62652-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKHPVPKKK TSKARRDARR SHHALTPPIL VPCPECKAMK PPHTVCPECG
60
YYAGRKVLEV
Length:60
Mass (Da):6,717
Last modified:January 23, 2007 - v2
Checksum:i9599DCB90FF2DE45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002823 Genomic DNA. Translation: BAA19663.1.
AE017221 Genomic DNA. Translation: AAS80398.1.
PIRiT11853.
RefSeqiWP_011172507.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS80398; AAS80398; TT_C0050.
KEGGitth:TT_C0050.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL32_THET2
AccessioniPrimary (citable) accession number: P62652
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 87 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families