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Protein

30S ribosomal protein Thx

Gene

rpsU

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds at the top of the head of the 30S subunit. It stabilizes a number of different RNA elements and thus is important for subunit structure (By similarity).By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1042-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein Thx
Gene namesi
Name:rpsU
Ordered Locus Names:TT_C1030
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 272630S ribosomal protein ThxPRO_0000217201Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Structurei

Secondary structure

1
27
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 83Combined sources
Helixi9 – 157Combined sources
Beta strandi20 – 223Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20U1-27[»]
4V4IX-ray3.71v1-27[»]
4V4JX-ray3.83v1-27[»]
4V63X-ray3.21AU/CU1-27[»]
4V67X-ray3.00AU/CU1-27[»]
4V7PX-ray3.62AU/DU2-25[»]
4V83X-ray3.50AU/CU2-25[»]
4V84X-ray3.40AU/CU2-25[»]
4V9NX-ray3.40AU/CU2-25[»]
4V9QX-ray3.40BU/DU2-25[»]
4XEJX-ray3.80ATHX/BTHX2-25[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62613.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S31e family.Curated

Phylogenomic databases

eggNOGiNOG262440.

Family and domain databases

InterProiIPR030826. Ribo_THX.
[Graphical view]
TIGRFAMsiTIGR04560. ribo_THX. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62613-1 [UniParc]FASTAAdd to basket

« Hide

        10         20 
MGKGDRRTRR GKIWRGTYGK YRPRKKK
Length:27
Mass (Da):3,337
Last modified:January 23, 2007 - v2
Checksum:i85822DC5D8D8C604
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81372.1.
RefSeqiYP_004999.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81372; AAS81372; TT_C1030.
KEGGitth:TTC1030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81372.1.
RefSeqiYP_004999.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20U1-27[»]
4V4IX-ray3.71v1-27[»]
4V4JX-ray3.83v1-27[»]
4V63X-ray3.21AU/CU1-27[»]
4V67X-ray3.00AU/CU1-27[»]
4V7PX-ray3.62AU/DU2-25[»]
4V83X-ray3.50AU/CU2-25[»]
4V84X-ray3.40AU/CU2-25[»]
4V9NX-ray3.40AU/CU2-25[»]
4V9QX-ray3.40BU/DU2-25[»]
4XEJX-ray3.80ATHX/BTHX2-25[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81372; AAS81372; TT_C1030.
KEGGitth:TTC1030.

Phylogenomic databases

eggNOGiNOG262440.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1042-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62613.

Family and domain databases

InterProiIPR030826. Ribo_THX.
[Graphical view]
TIGRFAMsiTIGR04560. ribo_THX. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRSHX_THET2
AccessioniPrimary (citable) accession number: P62613
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: April 29, 2015
This is version 58 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.