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Protein

30S ribosomal protein Thx

Gene

rpsU

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds at the top of the head of the 30S subunit. It stabilizes a number of different RNA elements and thus is important for subunit structure (By similarity).By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein Thx
Gene namesi
Name:rpsU
Ordered Locus Names:TT_C1030
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00002172012 – 2730S ribosomal protein ThxAdd BLAST26

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Structurei

Secondary structure

127
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 8Combined sources3
Helixi9 – 15Combined sources7
Beta strandi20 – 22Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20U1-27[»]
4V4IX-ray3.71v1-27[»]
4V4JX-ray3.83v1-27[»]
4V63X-ray3.21AU/CU1-27[»]
4V67X-ray3.00AU/CU1-27[»]
4V7PX-ray3.62AU/DU2-25[»]
4V83X-ray3.50AU/CU2-25[»]
4V84X-ray3.40AU/CU2-25[»]
4V9NX-ray3.40AU/CU2-25[»]
4V9QX-ray3.40BU/DU2-25[»]
4XEJX-ray3.80ATHX/BTHX2-25[»]
5J4DX-ray3.10DB/ID1-27[»]
SMRiP62613.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62613.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S31e family.Curated

Phylogenomic databases

KOiK19033.

Family and domain databases

InterProiIPR030826. Ribo_THX.
IPR031414. Thx.
[Graphical view]
PfamiPF17070. Thx. 1 hit.
[Graphical view]
TIGRFAMsiTIGR04560. ribo_THX. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62613-1 [UniParc]FASTAAdd to basket

« Hide

        10         20 
MGKGDRRTRR GKIWRGTYGK YRPRKKK
Length:27
Mass (Da):3,337
Last modified:January 23, 2007 - v2
Checksum:i85822DC5D8D8C604
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81372.1.
RefSeqiWP_008632889.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81372; AAS81372; TT_C1030.
KEGGitth:TT_C1030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81372.1.
RefSeqiWP_008632889.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20U1-27[»]
4V4IX-ray3.71v1-27[»]
4V4JX-ray3.83v1-27[»]
4V63X-ray3.21AU/CU1-27[»]
4V67X-ray3.00AU/CU1-27[»]
4V7PX-ray3.62AU/DU2-25[»]
4V83X-ray3.50AU/CU2-25[»]
4V84X-ray3.40AU/CU2-25[»]
4V9NX-ray3.40AU/CU2-25[»]
4V9QX-ray3.40BU/DU2-25[»]
4XEJX-ray3.80ATHX/BTHX2-25[»]
5J4DX-ray3.10DB/ID1-27[»]
SMRiP62613.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81372; AAS81372; TT_C1030.
KEGGitth:TT_C1030.

Phylogenomic databases

KOiK19033.

Miscellaneous databases

EvolutionaryTraceiP62613.

Family and domain databases

InterProiIPR030826. Ribo_THX.
IPR031414. Thx.
[Graphical view]
PfamiPF17070. Thx. 1 hit.
[Graphical view]
TIGRFAMsiTIGR04560. ribo_THX. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRSHX_THET2
AccessioniPrimary (citable) accession number: P62613
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.