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P62442

- RL11_THET2

UniProt

P62442 - RL11_THET2

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Protein

50S ribosomal protein L11

Gene

rplK

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.UniRule annotation

GO - Molecular functioni

  1. large ribosomal subunit rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1775-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11UniRule annotation
Gene namesi
Name:rplKUniRule annotation
Ordered Locus Names:TT_C1738
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14714750S ribosomal protein L11PRO_0000104398Add
BLAST

Post-translational modificationi

One or more lysine residues are methylated.UniRule annotation

Keywords - PTMi

Methylation

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.UniRule annotation

Structurei

Secondary structure

1
147
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi9 – 113Combined sources
Beta strandi13 – 153Combined sources
Helixi23 – 264Combined sources
Turni28 – 314Combined sources
Turni34 – 363Combined sources
Helixi38 – 403Combined sources
Beta strandi45 – 484Combined sources
Beta strandi55 – 573Combined sources
Beta strandi61 – 633Combined sources
Helixi74 – 763Combined sources
Helixi78 – 814Combined sources
Turni91 – 933Combined sources
Beta strandi97 – 993Combined sources
Helixi103 – 1064Combined sources
Helixi107 – 1115Combined sources
Turni112 – 1143Combined sources
Beta strandi115 – 1173Combined sources
Helixi122 – 13211Combined sources
Turni133 – 1353Combined sources
Beta strandi141 – 1433Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KBUX-ray3.86K2-141[»]
4KBWX-ray3.86K2-141[»]
4KCZX-ray3.50K2-141[»]
4KD2X-ray3.50K2-141[»]
4KD9X-ray3.50K2-141[»]
4KDBX-ray3.50K2-141[»]
4KDHX-ray4.00K2-141[»]
4KDKX-ray4.00K2-141[»]
4KFIX-ray3.40K1-147[»]
4KFLX-ray3.40K1-147[»]
4QS1X-ray3.80K2-141[»]
4QS3X-ray3.80K2-141[»]
ProteinModelPortaliP62442.
SMRiP62442. Positions 1-147.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L11P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0080.
KOiK02867.
OMAiFKIESAM.
OrthoDBiEOG69PQ9D.

Family and domain databases

Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11.
InterProiIPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsiTIGR01632. L11_bact. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62442-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKVVAVVKL QLPAGKATPA PPVGPALGQH GANIMEFVKA FNAATANMGD
60 70 80 90 100
AIVPVEITIY ADRSFTFVTK TPPASYLIRK AAGLEKGAHK PGREKVGRIT
110 120 130 140
WEQVLEIAKQ KMPDLNTTDL EAAARMIAGS ARSMGVEVVG APEVKDA
Length:147
Mass (Da):15,505
Last modified:July 5, 2004 - v1
Checksum:i3D8DECEBE85B5FE9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82080.1.
RefSeqiYP_005707.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82080; AAS82080; TT_C1738.
GeneIDi2775642.
KEGGitth:TTC1738.
PATRICi23953941. VBITheThe54392_1737.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82080.1 .
RefSeqi YP_005707.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KBU X-ray 3.86 K 2-141 [» ]
4KBW X-ray 3.86 K 2-141 [» ]
4KCZ X-ray 3.50 K 2-141 [» ]
4KD2 X-ray 3.50 K 2-141 [» ]
4KD9 X-ray 3.50 K 2-141 [» ]
4KDB X-ray 3.50 K 2-141 [» ]
4KDH X-ray 4.00 K 2-141 [» ]
4KDK X-ray 4.00 K 2-141 [» ]
4KFI X-ray 3.40 K 1-147 [» ]
4KFL X-ray 3.40 K 1-147 [» ]
4QS1 X-ray 3.80 K 2-141 [» ]
4QS3 X-ray 3.80 K 2-141 [» ]
ProteinModelPortali P62442.
SMRi P62442. Positions 1-147.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS82080 ; AAS82080 ; TT_C1738 .
GeneIDi 2775642.
KEGGi tth:TTC1738.
PATRICi 23953941. VBITheThe54392_1737.

Phylogenomic databases

eggNOGi COG0080.
KOi K02867.
OMAi FKIESAM.
OrthoDBi EOG69PQ9D.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1775-MONOMER.

Family and domain databases

Gene3Di 1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPi MF_00736. Ribosomal_L11.
InterProi IPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view ]
PANTHERi PTHR11661. PTHR11661. 1 hit.
Pfami PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view ]
SMARTi SM00649. RL11. 1 hit.
[Graphical view ]
SUPFAMi SSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsi TIGR01632. L11_bact. 1 hit.
PROSITEi PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL11_THET2
AccessioniPrimary (citable) accession number: P62442
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3