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P62442

- RL11_THET2

UniProt

P62442 - RL11_THET2

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Protein
50S ribosomal protein L11
Gene
rplK, TT_C1738
Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors By similarity.UniRule annotation

GO - Molecular functioni

  1. large ribosomal subunit rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1775-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11
Gene namesi
Name:rplK
Ordered Locus Names:TT_C1738
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14714750S ribosomal protein L11UniRule annotation
PRO_0000104398Add
BLAST

Post-translational modificationi

One or more lysine residues are methylated By similarity.UniRule annotation

Keywords - PTMi

Methylation

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex By similarity.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi9 – 113
Beta strandi13 – 153
Helixi23 – 264
Turni28 – 314
Turni34 – 363
Helixi38 – 403
Beta strandi45 – 484
Beta strandi55 – 573
Beta strandi61 – 633
Helixi74 – 763
Helixi78 – 814
Turni91 – 933
Beta strandi97 – 993
Helixi103 – 1064
Helixi107 – 1115
Turni112 – 1143
Beta strandi115 – 1173
Helixi122 – 13211
Turni133 – 1353
Beta strandi141 – 1433

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KBUX-ray3.86K2-141[»]
4KBWX-ray3.86K2-141[»]
4KCZX-ray3.50K2-141[»]
4KD2X-ray3.50K2-141[»]
4KD9X-ray3.50K2-141[»]
4KDBX-ray3.50K2-141[»]
4KDHX-ray4.00K2-141[»]
4KDKX-ray4.00K2-141[»]
4KFIX-ray3.40K1-147[»]
4KFLX-ray3.40K1-147[»]
ProteinModelPortaliP62442.
SMRiP62442. Positions 1-147.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0080.
KOiK02867.
OMAiFKIESAM.
OrthoDBiEOG69PQ9D.

Family and domain databases

Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11.
InterProiIPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsiTIGR01632. L11_bact. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62442-1 [UniParc]FASTAAdd to Basket

« Hide

MKKVVAVVKL QLPAGKATPA PPVGPALGQH GANIMEFVKA FNAATANMGD    50
AIVPVEITIY ADRSFTFVTK TPPASYLIRK AAGLEKGAHK PGREKVGRIT 100
WEQVLEIAKQ KMPDLNTTDL EAAARMIAGS ARSMGVEVVG APEVKDA 147
Length:147
Mass (Da):15,505
Last modified:July 5, 2004 - v1
Checksum:i3D8DECEBE85B5FE9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS82080.1.
RefSeqiWP_011174097.1. NC_005835.1.
YP_005707.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82080; AAS82080; TT_C1738.
GeneIDi2775642.
KEGGitth:TTC1738.
PATRICi23953941. VBITheThe54392_1737.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017221 Genomic DNA. Translation: AAS82080.1 .
RefSeqi WP_011174097.1. NC_005835.1.
YP_005707.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KBU X-ray 3.86 K 2-141 [» ]
4KBW X-ray 3.86 K 2-141 [» ]
4KCZ X-ray 3.50 K 2-141 [» ]
4KD2 X-ray 3.50 K 2-141 [» ]
4KD9 X-ray 3.50 K 2-141 [» ]
4KDB X-ray 3.50 K 2-141 [» ]
4KDH X-ray 4.00 K 2-141 [» ]
4KDK X-ray 4.00 K 2-141 [» ]
4KFI X-ray 3.40 K 1-147 [» ]
4KFL X-ray 3.40 K 1-147 [» ]
ProteinModelPortali P62442.
SMRi P62442. Positions 1-147.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS82080 ; AAS82080 ; TT_C1738 .
GeneIDi 2775642.
KEGGi tth:TTC1738.
PATRICi 23953941. VBITheThe54392_1737.

Phylogenomic databases

eggNOGi COG0080.
KOi K02867.
OMAi FKIESAM.
OrthoDBi EOG69PQ9D.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1775-MONOMER.

Family and domain databases

Gene3Di 1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPi MF_00736. Ribosomal_L11.
InterProi IPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view ]
PANTHERi PTHR11661. PTHR11661. 1 hit.
Pfami PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view ]
SMARTi SM00649. RL11. 1 hit.
[Graphical view ]
SUPFAMi SSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsi TIGR01632. L11_bact. 1 hit.
PROSITEi PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRL11_THET2
AccessioniPrimary (citable) accession number: P62442
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 3, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi