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Protein

40S ribosomal protein S13

Gene

Rps13

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:Rps13
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi621027. Rps13.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001156641 – 15140S ribosomal protein S13Add BLAST151

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei27N6-acetyllysine; alternateBy similarity1
Modified residuei27N6-succinyllysine; alternateBy similarity1
Modified residuei30PhosphoserineBy similarity1
Modified residuei34N6-succinyllysineBy similarity1
Modified residuei38PhosphotyrosineBy similarity1
Cross-linki43Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP62278.
PRIDEiP62278.

PTM databases

iPTMnetiP62278.
PhosphoSitePlusiP62278.

Expressioni

Gene expression databases

BgeeiENSRNOG00000028021.
GenevisibleiP62278. RN.

Interactioni

Protein-protein interaction databases

IntActiP62278. 2 interactors.
MINTiMINT-4577079.
STRINGi10116.ENSRNOP00000036690.

Structurei

3D structure databases

ProteinModelPortaliP62278.
SMRiP62278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400. Eukaryota.
COG0184. LUCA.
GeneTreeiENSGT00390000017491.
HOGENOMiHOG000180723.
HOVERGENiHBG000938.
InParanoidiP62278.
KOiK02953.
OMAiWHLVKKA.
OrthoDBiEOG091G0X8F.
PhylomeDBiP62278.
TreeFamiTF300190.

Family and domain databases

CDDicd00353. Ribosomal_S15p_S13e. 1 hit.
Gene3Di1.10.287.10. 1 hit.
HAMAPiMF_01343_A. Ribosomal_S15_A. 1 hit.
InterProiView protein in InterPro
IPR012606. Ribosomal_S13/S15_N.
IPR000589. Ribosomal_S15.
IPR023029. Ribosomal_S15P.
IPR009068. S15_NS1_RNA-bd.
PANTHERiPTHR11885. PTHR11885. 1 hit.
PfamiView protein in Pfam
PF08069. Ribosomal_S13_N. 1 hit.
PF00312. Ribosomal_S15. 1 hit.
SMARTiView protein in SMART
SM01386. Ribosomal_S13_N. 1 hit.
SM01387. Ribosomal_S15. 1 hit.
SUPFAMiSSF47060. SSF47060. 1 hit.
PROSITEiView protein in PROSITE
PS00362. RIBOSOMAL_S15. 1 hit.

Sequencei

Sequence statusi: Complete.

P62278-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI
60 70 80 90 100
GVILRDSHGV AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK
110 120 130 140 150
HLERNRKDKD AKFRLILIES RIHRLARYYK TKRVLPPNWK YESSTASALV

A
Length:151
Mass (Da):17,222
Last modified:January 23, 2007 - v2
Checksum:i23F94D38F87B8D53
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X53378 mRNA. Translation: CAA37458.1.
BC084724 mRNA. Translation: AAH84724.1.
L01123 mRNA. Translation: AAB59695.1.
PIRiA35889. R3RT13.
RefSeqiNP_569116.1. NM_130432.2.
XP_001053043.1. XM_001053043.5.
XP_003753737.1. XM_003753689.3.
UniGeneiRn.103229.
Rn.198625.

Genome annotation databases

EnsembliENSRNOT00000034694; ENSRNOP00000036690; ENSRNOG00000028021.
GeneIDi161477.
684988.
KEGGirno:161477.
rno:684988.
UCSCiRGD:621027. rat.

Similar proteinsi

Entry informationi

Entry nameiRS13_RAT
AccessioniPrimary (citable) accession number: P62278
Secondary accession number(s): P19116, Q02546, Q29200
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: January 23, 2007
Last modified: November 22, 2017
This is version 117 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families