Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S29

Gene

Rps29

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi21 – 211ZincSequence analysis
Metal bindingi24 – 241ZincSequence analysis
Metal bindingi39 – 391ZincSequence analysis
Metal bindingi42 – 421ZincSequence analysis

GO - Molecular functioni

GO - Biological processi

  • positive regulation of apoptotic process Source: RGD
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S29
Gene namesi
Name:Rps29
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 13, Chromosome 3, Chromosome 6, Chromosome 7

Organism-specific databases

RGDi3596. Rps29.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 565540S ribosomal protein S29PRO_0000131022Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei9 – 91PhosphoserineBy similarity
Modified residuei48 – 481N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiP62275.
PRIDEiP62275.

PTM databases

iPTMnetiP62275.

Expressioni

Gene expression databases

GenevisibleiP62275. RN.

Interactioni

Protein-protein interaction databases

MINTiMINT-4133230.
STRINGi10116.ENSRNOP00000044909.

Structurei

3D structure databases

ProteinModelPortaliP62275.
SMRiP62275. Positions 2-56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S14P family.Curated

Phylogenomic databases

eggNOGiKOG3506. Eukaryota.
COG0199. LUCA.
GeneTreeiENSGT00390000005814.
HOVERGENiHBG004459.
InParanoidiP62275.
KOiK02980.
OMAiCFREKAA.
OrthoDBiEOG78D7P4.
PhylomeDBiP62275.
TreeFamiTF300217.

Family and domain databases

InterProiIPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
[Graphical view]
PfamiPF00253. Ribosomal_S14. 1 hit.
[Graphical view]
PROSITEiPS00527. RIBOSOMAL_S14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62275-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGHQQLYWSH PRKFGQGSRS CRVCSNRHGL IRKYGLNMCR QCFRQYAKDI

GFIKLD
Length:56
Mass (Da):6,677
Last modified:January 23, 2007 - v2
Checksum:i41325122B493EFF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59051 mRNA. Translation: CAA41778.1.
BC058150 mRNA. Translation: AAH58150.1.
PIRiS30298.
RefSeqiNP_037008.1. NM_012876.1.
UniGeneiRn.34942.

Genome annotation databases

EnsembliENSRNOT00000005577; ENSRNOP00000005577; ENSRNOG00000004196.
ENSRNOT00000041384; ENSRNOP00000044909; ENSRNOG00000028939.
ENSRNOT00000046690; ENSRNOP00000043270; ENSRNOG00000032542.
ENSRNOT00000050726; ENSRNOP00000040703; ENSRNOG00000029443.
GeneIDi25348.
KEGGirno:25348.
UCSCiRGD:3596. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59051 mRNA. Translation: CAA41778.1.
BC058150 mRNA. Translation: AAH58150.1.
PIRiS30298.
RefSeqiNP_037008.1. NM_012876.1.
UniGeneiRn.34942.

3D structure databases

ProteinModelPortaliP62275.
SMRiP62275. Positions 2-56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4133230.
STRINGi10116.ENSRNOP00000044909.

PTM databases

iPTMnetiP62275.

Proteomic databases

PaxDbiP62275.
PRIDEiP62275.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000005577; ENSRNOP00000005577; ENSRNOG00000004196.
ENSRNOT00000041384; ENSRNOP00000044909; ENSRNOG00000028939.
ENSRNOT00000046690; ENSRNOP00000043270; ENSRNOG00000032542.
ENSRNOT00000050726; ENSRNOP00000040703; ENSRNOG00000029443.
GeneIDi25348.
KEGGirno:25348.
UCSCiRGD:3596. rat.

Organism-specific databases

CTDi6235.
RGDi3596. Rps29.

Phylogenomic databases

eggNOGiKOG3506. Eukaryota.
COG0199. LUCA.
GeneTreeiENSGT00390000005814.
HOVERGENiHBG004459.
InParanoidiP62275.
KOiK02980.
OMAiCFREKAA.
OrthoDBiEOG78D7P4.
PhylomeDBiP62275.
TreeFamiTF300217.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP62275.

Gene expression databases

GenevisibleiP62275. RN.

Family and domain databases

InterProiIPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
[Graphical view]
PfamiPF00253. Ribosomal_S14. 1 hit.
[Graphical view]
PROSITEiPS00527. RIBOSOMAL_S14. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Zinc finger-like motifs in rat ribosomal proteins S27 and S29."
    Chan Y.-L., Suzuki K., Olvera J., Wool I.G.
    Nucleic Acids Res. 21:649-655(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 2-56.
    Strain: Sprague-Dawley.
    Tissue: Liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pituitary.

Entry informationi

Entry nameiRS29_RAT
AccessioniPrimary (citable) accession number: P62275
Secondary accession number(s): P30054
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: January 23, 2007
Last modified: July 6, 2016
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.