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P62274

- RS29_MOUSE

UniProt

P62274 - RS29_MOUSE

Protein

40S ribosomal protein S29

Gene

Rps29

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    Cofactori

    Binds 1 zinc ion per subunit.Curated

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi21 – 211ZincSequence Analysis
    Metal bindingi24 – 241ZincSequence Analysis
    Metal bindingi39 – 391ZincSequence Analysis
    Metal bindingi42 – 421ZincSequence Analysis

    GO - Molecular functioni

    1. structural constituent of ribosome Source: MGI
    2. zinc ion binding Source: MGI

    GO - Biological processi

    1. translation Source: MGI

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S29
    Gene namesi
    Name:Rps29
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 12

    Organism-specific databases

    MGIiMGI:107681. Rps29.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: MGI

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 565540S ribosomal protein S29PRO_0000131020Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei48 – 481N6-acetyllysineBy similarity

    Keywords - PTMi

    Acetylation

    Proteomic databases

    PaxDbiP62274.
    PRIDEiP62274.

    PTM databases

    PhosphoSiteiP62274.

    Expressioni

    Gene expression databases

    BgeeiP62274.
    CleanExiMM_RPS29.
    GenevestigatoriP62274.

    Interactioni

    Protein-protein interaction databases

    BioGridi203009. 1 interaction.
    MINTiMINT-1855089.

    Structurei

    3D structure databases

    ProteinModelPortaliP62274.
    SMRiP62274. Positions 4-56.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S14P family.Curated

    Phylogenomic databases

    eggNOGiCOG0199.
    GeneTreeiENSGT00390000005814.
    HOVERGENiHBG004459.
    InParanoidiP62274.
    KOiK02980.
    OMAiCFREKAA.
    OrthoDBiEOG78D7P4.
    PhylomeDBiP62274.
    TreeFamiTF300217.

    Family and domain databases

    InterProiIPR001209. Ribosomal_S14.
    IPR018271. Ribosomal_S14_CS.
    [Graphical view]
    PfamiPF00253. Ribosomal_S14. 1 hit.
    [Graphical view]
    PROSITEiPS00527. RIBOSOMAL_S14. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62274-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGHQQLYWSH PRKFGQGSRS CRVCSNRHGL IRKYGLNMCR QCFRQYAKDI   50
    GFIKLD 56
    Length:56
    Mass (Da):6,677
    Last modified:January 23, 2007 - v2
    Checksum:i41325122B493EFF9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L31609 mRNA. Translation: AAB27429.1.
    AK002939 mRNA. Translation: BAB22469.1.
    AK012285 mRNA. Translation: BAB28143.1.
    BC024393 mRNA. Translation: AAH24393.1.
    BC051203 mRNA. Translation: AAH51203.1.
    CCDSiCCDS36461.1.
    PIRiS71578.
    RefSeqiNP_033119.1. NM_009093.2.
    UniGeneiMm.379006.

    Genome annotation databases

    EnsembliENSMUST00000037023; ENSMUSP00000038352; ENSMUSG00000034892.
    GeneIDi20090.
    KEGGimmu:20090.
    UCSCiuc007nrp.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L31609 mRNA. Translation: AAB27429.1 .
    AK002939 mRNA. Translation: BAB22469.1 .
    AK012285 mRNA. Translation: BAB28143.1 .
    BC024393 mRNA. Translation: AAH24393.1 .
    BC051203 mRNA. Translation: AAH51203.1 .
    CCDSi CCDS36461.1.
    PIRi S71578.
    RefSeqi NP_033119.1. NM_009093.2.
    UniGenei Mm.379006.

    3D structure databases

    ProteinModelPortali P62274.
    SMRi P62274. Positions 4-56.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 203009. 1 interaction.
    MINTi MINT-1855089.

    PTM databases

    PhosphoSitei P62274.

    Proteomic databases

    PaxDbi P62274.
    PRIDEi P62274.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000037023 ; ENSMUSP00000038352 ; ENSMUSG00000034892 .
    GeneIDi 20090.
    KEGGi mmu:20090.
    UCSCi uc007nrp.2. mouse.

    Organism-specific databases

    CTDi 6235.
    MGIi MGI:107681. Rps29.

    Phylogenomic databases

    eggNOGi COG0199.
    GeneTreei ENSGT00390000005814.
    HOVERGENi HBG004459.
    InParanoidi P62274.
    KOi K02980.
    OMAi CFREKAA.
    OrthoDBi EOG78D7P4.
    PhylomeDBi P62274.
    TreeFami TF300217.

    Enzyme and pathway databases

    Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Miscellaneous databases

    NextBioi 297591.
    PROi P62274.
    SOURCEi Search...

    Gene expression databases

    Bgeei P62274.
    CleanExi MM_RPS29.
    Genevestigatori P62274.

    Family and domain databases

    InterProi IPR001209. Ribosomal_S14.
    IPR018271. Ribosomal_S14_CS.
    [Graphical view ]
    Pfami PF00253. Ribosomal_S14. 1 hit.
    [Graphical view ]
    PROSITEi PS00527. RIBOSOMAL_S14. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The S29 ribosomal protein increases tumor suppressor activity of K rev-1 gene on v-K ras-transformed NIH3T3 cells."
      Kondoh N., Noda M., Fisher R.J., Schweinfest C.W., Papas T.S., Kondoh A., Samuel K.P., Oikawa T.
      Biochim. Biophys. Acta 1313:41-46(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: BALB/c.
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Brain.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Colon and Mammary gland.

    Entry informationi

    Entry nameiRS29_MOUSE
    AccessioniPrimary (citable) accession number: P62274
    Secondary accession number(s): P30054
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 5, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 88 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3