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Protein

30S ribosomal protein S16

Gene

rpsP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-687-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S16UniRule annotation
Gene namesi
Name:rpsPUniRule annotation
Synonyms:rps16UniRule annotation
Ordered Locus Names:TT_C0673
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 888830S ribosomal protein S16PRO_0000167268Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0673.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 1110Combined sources
Beta strandi14 – 2310Combined sources
Beta strandi24 – 263Combined sources
Beta strandi28 – 303Combined sources
Beta strandi33 – 397Combined sources
Beta strandi48 – 514Combined sources
Helixi53 – 619Combined sources
Helixi68 – 769Combined sources
Beta strandi77 – 804Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20P1-88[»]
4V4IX-ray3.71q1-88[»]
4V4JX-ray3.83q1-88[»]
4V63X-ray3.21AP/CP1-88[»]
4V67X-ray3.00AP/CP1-88[»]
4V7PX-ray3.62AP/DP1-83[»]
4V83X-ray3.50AP/CP1-83[»]
4V84X-ray3.40AP/CP1-83[»]
4V9JX-ray3.86AP/CP1-84[»]
4V9KX-ray3.50AP/CP1-84[»]
4V9LX-ray3.50AP/CP1-84[»]
4V9MX-ray4.00AP/CP1-84[»]
4V9NX-ray3.40AP/CP1-83[»]
4V9QX-ray3.40BP/DP1-83[»]
4W29X-ray3.80AP/CP1-84[»]
ProteinModelPortaliP62238.
SMRiP62238. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62238.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S16P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0228.
KOiK02959.
OMAiKRMGAHK.
OrthoDBiEOG6CVVKH.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.

Sequencei

Sequence statusi: Complete.

P62238-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK
60 70 80
VDVERARYWL SVGAQPTDTA RRLLRQAGVF RQEAREGA
Length:88
Mass (Da):10,387
Last modified:July 5, 2004 - v1
Checksum:iF8E45F06816EA96F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqiYP_004648.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81021; AAS81021; TT_C0673.
KEGGitth:TTC0673.
PATRICi23951751. VBITheThe54392_0670.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqiYP_004648.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20P1-88[»]
4V4IX-ray3.71q1-88[»]
4V4JX-ray3.83q1-88[»]
4V63X-ray3.21AP/CP1-88[»]
4V67X-ray3.00AP/CP1-88[»]
4V7PX-ray3.62AP/DP1-83[»]
4V83X-ray3.50AP/CP1-83[»]
4V84X-ray3.40AP/CP1-83[»]
4V9JX-ray3.86AP/CP1-84[»]
4V9KX-ray3.50AP/CP1-84[»]
4V9LX-ray3.50AP/CP1-84[»]
4V9MX-ray4.00AP/CP1-84[»]
4V9NX-ray3.40AP/CP1-83[»]
4V9QX-ray3.40BP/DP1-83[»]
4W29X-ray3.80AP/CP1-84[»]
ProteinModelPortaliP62238.
SMRiP62238. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0673.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81021; AAS81021; TT_C0673.
KEGGitth:TTC0673.
PATRICi23951751. VBITheThe54392_0670.

Phylogenomic databases

eggNOGiCOG0228.
KOiK02959.
OMAiKRMGAHK.
OrthoDBiEOG6CVVKH.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-687-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62238.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS16_THET2
AccessioniPrimary (citable) accession number: P62238
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: April 1, 2015
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.