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Protein

30S ribosomal protein S16

Gene

rpsP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-687-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S16UniRule annotation
Gene namesi
Name:rpsPUniRule annotation
Synonyms:rps16UniRule annotation
Ordered Locus Names:TT_C0673
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 888830S ribosomal protein S16PRO_0000167268Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0673.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 1110Combined sources
Beta strandi14 – 2310Combined sources
Beta strandi24 – 263Combined sources
Beta strandi28 – 303Combined sources
Beta strandi33 – 397Combined sources
Beta strandi48 – 514Combined sources
Helixi53 – 619Combined sources
Helixi68 – 769Combined sources
Beta strandi77 – 804Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20P1-88[»]
4V4IX-ray3.71q1-88[»]
4V4JX-ray3.83q1-88[»]
4V63X-ray3.21AP/CP1-88[»]
4V67X-ray3.00AP/CP1-88[»]
4V7PX-ray3.62AP/DP1-83[»]
4V83X-ray3.50AP/CP1-83[»]
4V84X-ray3.40AP/CP1-83[»]
4V9JX-ray3.86AP/CP1-84[»]
4V9KX-ray3.50AP/CP1-84[»]
4V9LX-ray3.50AP/CP1-84[»]
4V9MX-ray4.00AP/CP1-84[»]
4V9NX-ray3.40AP/CP1-83[»]
4V9QX-ray3.40BP/DP1-83[»]
4W29X-ray3.80AP/CP1-84[»]
4XEJX-ray3.80AS16/BS161-83[»]
5J4DX-ray3.10DD/YA1-88[»]
ProteinModelPortaliP62238.
SMRiP62238. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62238.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S16P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K5M. Bacteria.
COG0228. LUCA.
KOiK02959.
OMAiGQKKAPF.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16. 1 hit.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.

Sequencei

Sequence statusi: Complete.

P62238-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK
60 70 80
VDVERARYWL SVGAQPTDTA RRLLRQAGVF RQEAREGA
Length:88
Mass (Da):10,387
Last modified:July 5, 2004 - v1
Checksum:iF8E45F06816EA96F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqiWP_011173115.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81021; AAS81021; TT_C0673.
KEGGitth:TTC0673.
PATRICi23951751. VBITheThe54392_0670.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqiWP_011173115.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20P1-88[»]
4V4IX-ray3.71q1-88[»]
4V4JX-ray3.83q1-88[»]
4V63X-ray3.21AP/CP1-88[»]
4V67X-ray3.00AP/CP1-88[»]
4V7PX-ray3.62AP/DP1-83[»]
4V83X-ray3.50AP/CP1-83[»]
4V84X-ray3.40AP/CP1-83[»]
4V9JX-ray3.86AP/CP1-84[»]
4V9KX-ray3.50AP/CP1-84[»]
4V9LX-ray3.50AP/CP1-84[»]
4V9MX-ray4.00AP/CP1-84[»]
4V9NX-ray3.40AP/CP1-83[»]
4V9QX-ray3.40BP/DP1-83[»]
4W29X-ray3.80AP/CP1-84[»]
4XEJX-ray3.80AS16/BS161-83[»]
5J4DX-ray3.10DD/YA1-88[»]
ProteinModelPortaliP62238.
SMRiP62238. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC0673.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81021; AAS81021; TT_C0673.
KEGGitth:TTC0673.
PATRICi23951751. VBITheThe54392_0670.

Phylogenomic databases

eggNOGiENOG4105K5M. Bacteria.
COG0228. LUCA.
KOiK02959.
OMAiGQKKAPF.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-687-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62238.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16. 1 hit.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS16_THET2
AccessioniPrimary (citable) accession number: P62238
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.