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P62238 (RS16_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S16
Gene names
Name:rpsP
Synonyms:rps16
Ordered Locus Names:TT_C0673
OrganismThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]
Taxonomic identifier262724 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length88 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains By similarity. HAMAP-Rule MF_00385

Subunit structure

Part of the 30S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein S16P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 888830S ribosomal protein S16 HAMAP-Rule MF_00385
PRO_0000167268

Secondary structure

................. 88
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P62238 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: F8E45F06816EA96F

FASTA8810,387
        10         20         30         40         50         60 
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK VDVERARYWL 

        70         80 
SVGAQPTDTA RRLLRQAGVF RQEAREGA 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqYP_004648.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83q1-88[»]
3D5AX-ray3.21P1-88[»]
3D5CX-ray3.21P1-88[»]
3F1EX-ray3.00P1-88[»]
3F1GX-ray3.00P1-88[»]
3MR8X-ray3.62P1-83[»]
3MS0X-ray3.62P1-83[»]
3PYNX-ray3.50P1-83[»]
3PYQX-ray3.50P1-83[»]
3PYSX-ray3.40P1-83[»]
3PYUX-ray3.40P1-83[»]
4KBTX-ray3.86P1-84[»]
4KBVX-ray3.86P1-84[»]
4KCYX-ray3.50P1-84[»]
4KD0X-ray3.50P1-84[»]
4KD8X-ray3.50P1-84[»]
4KDAX-ray3.50P1-84[»]
4KDGX-ray4.00P1-84[»]
4KDJX-ray4.00P1-84[»]
4KFHX-ray3.40P1-83[»]
4KFKX-ray3.40P1-83[»]
4L6KX-ray3.40P1-83[»]
4L6MX-ray3.40P1-83[»]
ProteinModelPortalP62238.
SMRP62238. Positions 1-88.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING262724.TTC0673.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAS81021; AAS81021; TT_C0673.
GeneID2776463.
KEGGtth:TTC0673.
PATRIC23951751. VBITheThe54392_0670.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0228.
KOK02959.
OMADLARVDH.
OrthoDBEOG6CVVKH.
ProtClustDBPRK00040.

Enzyme and pathway databases

BioCycTTHE262724:GCAT-687-MONOMER.

Family and domain databases

Gene3D3.30.1320.10. 1 hit.
HAMAPMF_00385. Ribosomal_S16.
InterProIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERPTHR12919. PTHR12919. 1 hit.
PfamPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMSSF54565. SSF54565. 1 hit.
TIGRFAMsTIGR00002. S16. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP62238.

Entry information

Entry nameRS16_THET2
AccessionPrimary (citable) accession number: P62238
Entry history
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references