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P62238

- RS16_THET2

UniProt

P62238 - RS16_THET2

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Protein

30S ribosomal protein S16

Gene

rpsP

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-687-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S16UniRule annotation
Gene namesi
Name:rpsPUniRule annotation
Synonyms:rps16UniRule annotation
Ordered Locus Names:TT_C0673
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 888830S ribosomal protein S16PRO_0000167268Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi262724.TTC0673.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 1110Combined sources
Beta strandi14 – 2310Combined sources
Beta strandi24 – 263Combined sources
Beta strandi28 – 303Combined sources
Beta strandi33 – 397Combined sources
Beta strandi48 – 514Combined sources
Helixi53 – 619Combined sources
Helixi68 – 769Combined sources
Beta strandi77 – 804Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83q1-88[»]
3D5AX-ray3.21P1-88[»]
3D5CX-ray3.21P1-88[»]
3F1EX-ray3.00P1-88[»]
3F1GX-ray3.00P1-88[»]
3MR8X-ray3.62P1-83[»]
3MS0X-ray3.62P1-83[»]
3PYNX-ray3.50P1-83[»]
3PYQX-ray3.50P1-83[»]
3PYSX-ray3.40P1-83[»]
3PYUX-ray3.40P1-83[»]
4KBTX-ray3.86P1-84[»]
4KBVX-ray3.86P1-84[»]
4KCYX-ray3.50P1-84[»]
4KD0X-ray3.50P1-84[»]
4KD8X-ray3.50P1-84[»]
4KDAX-ray3.50P1-84[»]
4KDGX-ray4.00P1-84[»]
4KDJX-ray4.00P1-84[»]
4KFHX-ray3.40P1-83[»]
4KFKX-ray3.40P1-83[»]
4KVBX-ray4.20P1-88[»]
4L6KX-ray3.40P1-83[»]
4L6MX-ray3.40P1-83[»]
4QS0X-ray3.80P1-84[»]
4QS2X-ray3.80P1-84[»]
ProteinModelPortaliP62238.
SMRiP62238. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62238.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S16P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0228.
KOiK02959.
OMAiFFRIVVM.
OrthoDBiEOG6CVVKH.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.

Sequencei

Sequence statusi: Complete.

P62238-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK
60 70 80
VDVERARYWL SVGAQPTDTA RRLLRQAGVF RQEAREGA
Length:88
Mass (Da):10,387
Last modified:July 5, 2004 - v1
Checksum:iF8E45F06816EA96F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1.
RefSeqiYP_004648.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81021; AAS81021; TT_C0673.
GeneIDi2776463.
KEGGitth:TTC0673.
PATRICi23951751. VBITheThe54392_0670.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81021.1 .
RefSeqi YP_004648.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QNH X-ray 3.83 q 1-88 [» ]
3D5A X-ray 3.21 P 1-88 [» ]
3D5C X-ray 3.21 P 1-88 [» ]
3F1E X-ray 3.00 P 1-88 [» ]
3F1G X-ray 3.00 P 1-88 [» ]
3MR8 X-ray 3.62 P 1-83 [» ]
3MS0 X-ray 3.62 P 1-83 [» ]
3PYN X-ray 3.50 P 1-83 [» ]
3PYQ X-ray 3.50 P 1-83 [» ]
3PYS X-ray 3.40 P 1-83 [» ]
3PYU X-ray 3.40 P 1-83 [» ]
4KBT X-ray 3.86 P 1-84 [» ]
4KBV X-ray 3.86 P 1-84 [» ]
4KCY X-ray 3.50 P 1-84 [» ]
4KD0 X-ray 3.50 P 1-84 [» ]
4KD8 X-ray 3.50 P 1-84 [» ]
4KDA X-ray 3.50 P 1-84 [» ]
4KDG X-ray 4.00 P 1-84 [» ]
4KDJ X-ray 4.00 P 1-84 [» ]
4KFH X-ray 3.40 P 1-83 [» ]
4KFK X-ray 3.40 P 1-83 [» ]
4KVB X-ray 4.20 P 1-88 [» ]
4L6K X-ray 3.40 P 1-83 [» ]
4L6M X-ray 3.40 P 1-83 [» ]
4QS0 X-ray 3.80 P 1-84 [» ]
4QS2 X-ray 3.80 P 1-84 [» ]
ProteinModelPortali P62238.
SMRi P62238. Positions 1-88.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 262724.TTC0673.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS81021 ; AAS81021 ; TT_C0673 .
GeneIDi 2776463.
KEGGi tth:TTC0673.
PATRICi 23951751. VBITheThe54392_0670.

Phylogenomic databases

eggNOGi COG0228.
KOi K02959.
OMAi FFRIVVM.
OrthoDBi EOG6CVVKH.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-687-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62238.

Family and domain databases

Gene3Di 3.30.1320.10. 1 hit.
HAMAPi MF_00385. Ribosomal_S16.
InterProi IPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view ]
PANTHERi PTHR12919. PTHR12919. 1 hit.
Pfami PF00886. Ribosomal_S16. 1 hit.
[Graphical view ]
SUPFAMi SSF54565. SSF54565. 1 hit.
TIGRFAMsi TIGR00002. S16. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS16_THET2
AccessioniPrimary (citable) accession number: P62238
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3