P62223 (GLND_RHOPA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
[Protein-PII] uridylyltransferase
Short name=PII uridylyl-transferase
EC=2.7.7.59

Alternative name(s):
UTase
Uridylyl-removing enzyme

Gene names

Name:	glnD
Ordered Locus Names:	RPA0591

Organism

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [Complete proteome] [HAMAP]

Taxonomic identifier

258594 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	929 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein By similarity. HAMAP-Rule MF_00277
Catalytic activity	UTP + [protein-PII] = diphosphate + uridylyl-[protein-PII]. HAMAP-Rule MF_00277
Sequence similarities	Belongs to the GlnD family.
Sequence caution	The sequence CAE26035.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Biological process	Nitrogen fixation
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	nitrogen fixation Inferred from electronic annotation. Source: HAMAP
Molecular_function	[protein-PII] uridylyltransferase activity Inferred from electronic annotation. Source: HAMAP amino acid binding Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: InterPro phosphoric diester hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 929	929	[Protein-PII] uridylyltransferase HAMAP-Rule MF_00277		PRO_0000192762

Sequences

	Sequence		Length	Mass (Da)
	P62223 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: BC13BFA4845F8785	FASTA	929	104,542
	10 20 30 40 50 60 MSPSRPAADE RFDSARVAAE IATLAEKHTG NDAAFRTALA MLMKAELAKA RTEAEAQLLR 70 80 90 100 110 120 DRHGRRCAER LCYVQDAIIR LLFNAATEYL YNTPTPSSSE RMTVVATGGY GRGLMAPESD 130 140 150 160 170 180 IDLLFILPYK QTAWGEQVAE VILYCLWDIG LKVGHATRSV DECIRQARAD MTIRTAILET 190 200 210 220 230 240 RFLAGDEALY AELVERFDKE VVEGTAAEFV AAKLAEREER HRRSGQSRYL VEPNVKDGKG 250 260 270 280 290 300 GLRDLHTLFW IAKYVYRVRE ASELSERGVF DPAEFRTFRR CEDFLWSVRC NIHFVTKRAE 310 320 330 340 350 360 DRLSFDLQRE IGVRLGYTSH PGMQDVERFM KHYFLIAKEV GNLTAILCAK LEDQQAKAAP 370 380 390 400 410 420 ALTRMMARLR PAAKRRRVPE SDDFVIDNNR INLAVPDVFK HDPVNLIRIF RLAQKNNLAF 430 440 450 460 470 480 HPDAMRSVTR SLSLITPQLR DNPEANRLFV EILTSDNAEP VLRRMNETGV LGRFIRAFGR 490 500 510 520 530 540 IVSMMQFNMY HSYTVDEHLI RCVGNLQEIE RGGNDEFALS SELIRKIRPD HRAVLYAAVL 550 560 570 580 590 600 LHDIAKGQPE DHSTAGAKVA RRLCPRFGFS TADTELVAWL IEKHLVMSTV AQSRDLSDRK 610 620 630 640 650 660 TIENFAAVVE TVEQMKMLTI LTTADIRGVG PGVWNGWKAQ LIRTLYYETE PVLTGGFSEV 670 680 690 700 710 720 NRAERIRAAQ AEFRAAFTEW PEADLNAYVA RHYPAYWLKV DLQRKIRHAR FLRASEQAGH 730 740 750 760 770 780 KLAINVGFDE ARAVTELTIL AVDHPWLLSV IAGACASAGA NIVDAQIYTT TDGRALDTIS 790 800 810 820 830 840 ISREYDRDED EGRRATRIGE TIEEVLEGKL RLPEAVARRA SSGSKAKLRA FVVEPEVEIN 850 860 870 880 890 900 NNWSDRYTVI EVSGLDRPGL LYQLTTAISK LNLNIASAHV ATFGERARDV FYVTDLLGAQ 910 920 ITAPTRQAAI KRALVHLLAN GDAAEKPAA

References

[1]

"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris." Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S. Nat. Biotechnol. 22:55-61(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-98 / CGA009.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX572594 Genomic DNA. Translation: CAE26035.1. Different initiation.
RefSeq	NP_945944.1. NC_005296.1.
3D structure databases
ProteinModelPortal	P62223.
ModBase	Search...
Protein-protein interaction databases
MINT	MINT-6732844.
STRING	258594.RPA0591.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE26035; CAE26035; RPA0591.
GeneID	2692917.
KEGG	rpa:RPA0591.
PATRIC	23285359. VBIRhoPal84835_0625.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2844.
HOGENOM	HOG000261779.
KO	K00990.
ProtClustDB	PRK05092.
Family and domain databases
Gene3D	1.10.3210.10. 1 hit.
HAMAP	MF_00277. PII_uridylyl-transf.
InterPro	IPR002912. ACT_dom. IPR010043. GlnD_Uridyltrans. IPR003607. HD/PDEase_dom. IPR006674. HD_domain. IPR002934. Nucleotidyltransferase. IPR013546. PII_UdlTrfase/GS_AdlTrfase. [Graphical view]
PANTHER	PTHR13734:SF1. PTHR13734:SF1. 1 hit.
Pfam	PF01842. ACT. 2 hits. PF08335. GlnD_UR_UTase. 1 hit. PF01966. HD. 1 hit. PF01909. NTP_transf_2. 1 hit. [Graphical view]
PIRSF	PIRSF006288. PII_uridyltransf. 1 hit.
SMART	SM00471. HDc. 1 hit. [Graphical view]
TIGRFAMs	TIGR01693. UTase_glnD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLND_RHOPA

Accession

Primary (citable) accession number: P62223

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program