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Protein

40S ribosomal protein S7

Gene

rps7

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • chordate embryonic development Source: ZFIN
  • hemopoiesis Source: ZFIN
  • regulation of cell cycle Source: ZFIN
  • ribosomal small subunit biogenesis Source: GO_Central
  • rRNA processing Source: GO_Central
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_291888. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_293365. Formation of the ternary complex, and subsequently, the 43S complex.
REACT_295558. Peptide chain elongation.
REACT_301827. Translation initiation complex formation.
REACT_307973. Formation of a pool of free 40S subunits.
REACT_316380. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_316944. Ribosomal scanning and start codon recognition.
REACT_321118. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_321649. Eukaryotic Translation Termination.
REACT_328707. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_350707. SRP-dependent cotranslational protein targeting to membrane.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S7
Gene namesi
Name:rps7
ORF Names:zgc:73216
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 20

Organism-specific databases

ZFINiZDB-GENE-040426-1718. rps7.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19419440S ribosomal protein S7PRO_0000174193Add
BLAST

Proteomic databases

PRIDEiP62084.

Expressioni

Gene expression databases

BgeeiP62084.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109497.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S7e family.Curated

Phylogenomic databases

eggNOGiNOG280542.
GeneTreeiENSGT00390000014122.
HOGENOMiHOG000197237.
HOVERGENiHBG001698.
InParanoidiP62084.
KOiK02993.
OMAiDIAFEFP.
OrthoDBiEOG74J997.
PhylomeDBiP62084.
TreeFamiTF343364.

Family and domain databases

InterProiIPR000554. Ribosomal_S7e.
[Graphical view]
PANTHERiPTHR11278. PTHR11278. 1 hit.
PfamiPF01251. Ribosomal_S7e. 1 hit.
[Graphical view]
PROSITEiPS00948. RIBOSOMAL_S7E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62084-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFSTSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELHITAAKE
60 70 80 90 100
IEVGGSRKAI IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI
110 120 130 140 150
LPKPTRKSRT KNKQKRPRSR TLTNVHDAIL EDLVFPSEIV GKRIRVKLDS
160 170 180 190
SRLIKVHLDK AQQNNVEHKV ETFAGVYKKL TGKDVIFEFP EFQL
Length:194
Mass (Da):22,250
Last modified:June 21, 2004 - v1
Checksum:i5010023055B0BAD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY561508 mRNA. Translation: AAS66961.1.
BX276180 Genomic DNA. Translation: CAH68965.1.
BC059562 mRNA. Translation: AAH59562.1.
RefSeqiNP_957046.1. NM_200752.1.
UniGeneiDr.28230.

Genome annotation databases

EnsembliENSDART00000126229; ENSDARP00000109497; ENSDARG00000042566.
ENSDART00000161116; ENSDARP00000138583; ENSDARG00000042566.
GeneIDi393725.
KEGGidre:393725.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY561508 mRNA. Translation: AAS66961.1.
BX276180 Genomic DNA. Translation: CAH68965.1.
BC059562 mRNA. Translation: AAH59562.1.
RefSeqiNP_957046.1. NM_200752.1.
UniGeneiDr.28230.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109497.

Proteomic databases

PRIDEiP62084.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000126229; ENSDARP00000109497; ENSDARG00000042566.
ENSDART00000161116; ENSDARP00000138583; ENSDARG00000042566.
GeneIDi393725.
KEGGidre:393725.

Organism-specific databases

CTDi6201.
ZFINiZDB-GENE-040426-1718. rps7.

Phylogenomic databases

eggNOGiNOG280542.
GeneTreeiENSGT00390000014122.
HOGENOMiHOG000197237.
HOVERGENiHBG001698.
InParanoidiP62084.
KOiK02993.
OMAiDIAFEFP.
OrthoDBiEOG74J997.
PhylomeDBiP62084.
TreeFamiTF343364.

Enzyme and pathway databases

ReactomeiREACT_291888. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_293365. Formation of the ternary complex, and subsequently, the 43S complex.
REACT_295558. Peptide chain elongation.
REACT_301827. Translation initiation complex formation.
REACT_307973. Formation of a pool of free 40S subunits.
REACT_316380. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_316944. Ribosomal scanning and start codon recognition.
REACT_321118. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_321649. Eukaryotic Translation Termination.
REACT_328707. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_350707. SRP-dependent cotranslational protein targeting to membrane.

Miscellaneous databases

NextBioi20814726.
PROiP62084.

Gene expression databases

BgeeiP62084.

Family and domain databases

InterProiIPR000554. Ribosomal_S7e.
[Graphical view]
PANTHERiPTHR11278. PTHR11278. 1 hit.
PfamiPF01251. Ribosomal_S7e. 1 hit.
[Graphical view]
PROSITEiPS00948. RIBOSOMAL_S7E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Many ribosomal protein genes are cancer genes in zebrafish."
    Amsterdam A., Sadler K.C., Lai K., Farrington S., Bronson R.T., Lees J.A., Hopkins N.
    PLoS Biol. 2:690-698(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.
  3. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Retina.

Entry informationi

Entry nameiRS7_DANRE
AccessioniPrimary (citable) accession number: P62084
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 21, 2004
Last sequence update: June 21, 2004
Last modified: July 22, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.