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P62084

- RS7_DANRE

UniProt

P62084 - RS7_DANRE

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Protein

40S ribosomal protein S7

Gene
rps7, zgc:73216
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. cytoplasmic translation Source: RefGenome
  2. hemopoiesis Source: ZFIN
  3. regulation of cell cycle Source: ZFIN
  4. ribosomal small subunit biogenesis Source: RefGenome
  5. rRNA processing Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_212254. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_220099. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_225540. SRP-dependent cotranslational protein targeting to membrane.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S7
Gene namesi
Name:rps7
ORF Names:zgc:73216
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 20

Organism-specific databases

ZFINiZDB-GENE-040426-1718. rps7.

Subcellular locationi

GO - Cellular componenti

  1. 90S preribosome Source: RefGenome
  2. cytosolic small ribosomal subunit Source: RefGenome
  3. small-subunit processome Source: RefGenome
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19419440S ribosomal protein S7PRO_0000174193Add
BLAST

Proteomic databases

PRIDEiP62084.

Expressioni

Gene expression databases

BgeeiP62084.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000062435.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG280542.
GeneTreeiENSGT00390000014122.
HOGENOMiHOG000197237.
HOVERGENiHBG001698.
InParanoidiP62084.
KOiK02993.
OMAiIEVGHGK.
OrthoDBiEOG74J997.
PhylomeDBiP62084.
TreeFamiTF343364.

Family and domain databases

InterProiIPR000554. Ribosomal_S7e.
[Graphical view]
PANTHERiPTHR11278. PTHR11278. 1 hit.
PfamiPF01251. Ribosomal_S7e. 1 hit.
[Graphical view]
PROSITEiPS00948. RIBOSOMAL_S7E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62084-1 [UniParc]FASTAAdd to Basket

« Hide

MFSTSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELHITAAKE    50
IEVGGSRKAI IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI 100
LPKPTRKSRT KNKQKRPRSR TLTNVHDAIL EDLVFPSEIV GKRIRVKLDS 150
SRLIKVHLDK AQQNNVEHKV ETFAGVYKKL TGKDVIFEFP EFQL 194
Length:194
Mass (Da):22,250
Last modified:June 21, 2004 - v1
Checksum:i5010023055B0BAD8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY561508 mRNA. Translation: AAS66961.1.
BX276180 Genomic DNA. Translation: CAH68965.1.
BC059562 mRNA. Translation: AAH59562.1.
RefSeqiNP_957046.1. NM_200752.1.
UniGeneiDr.28230.

Genome annotation databases

EnsembliENSDART00000126229; ENSDARP00000109497; ENSDARG00000042566.
GeneIDi393725.
KEGGidre:393725.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY561508 mRNA. Translation: AAS66961.1 .
BX276180 Genomic DNA. Translation: CAH68965.1 .
BC059562 mRNA. Translation: AAH59562.1 .
RefSeqi NP_957046.1. NM_200752.1.
UniGenei Dr.28230.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7955.ENSDARP00000062435.

Proteomic databases

PRIDEi P62084.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000126229 ; ENSDARP00000109497 ; ENSDARG00000042566 .
GeneIDi 393725.
KEGGi dre:393725.

Organism-specific databases

CTDi 6201.
ZFINi ZDB-GENE-040426-1718. rps7.

Phylogenomic databases

eggNOGi NOG280542.
GeneTreei ENSGT00390000014122.
HOGENOMi HOG000197237.
HOVERGENi HBG001698.
InParanoidi P62084.
KOi K02993.
OMAi IEVGHGK.
OrthoDBi EOG74J997.
PhylomeDBi P62084.
TreeFami TF343364.

Enzyme and pathway databases

Reactomei REACT_212254. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_220099. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_225540. SRP-dependent cotranslational protein targeting to membrane.

Miscellaneous databases

NextBioi 20814726.
PROi P62084.

Gene expression databases

Bgeei P62084.

Family and domain databases

InterProi IPR000554. Ribosomal_S7e.
[Graphical view ]
PANTHERi PTHR11278. PTHR11278. 1 hit.
Pfami PF01251. Ribosomal_S7e. 1 hit.
[Graphical view ]
PROSITEi PS00948. RIBOSOMAL_S7E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Many ribosomal protein genes are cancer genes in zebrafish."
    Amsterdam A., Sadler K.C., Lai K., Farrington S., Bronson R.T., Lees J.A., Hopkins N.
    PLoS Biol. 2:690-698(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.
  3. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Retina.

Entry informationi

Entry nameiRS7_DANRE
AccessioniPrimary (citable) accession number: P62084
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 21, 2004
Last sequence update: June 21, 2004
Last modified: September 3, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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