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P62084

- RS7_DANRE

UniProt

P62084 - RS7_DANRE

Protein

40S ribosomal protein S7

Gene

rps7

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (21 Jun 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. cytoplasmic translation Source: RefGenome
    2. hemopoiesis Source: ZFIN
    3. regulation of cell cycle Source: ZFIN
    4. ribosomal small subunit biogenesis Source: RefGenome
    5. rRNA processing Source: RefGenome

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    ReactomeiREACT_212254. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_220099. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_225540. SRP-dependent cotranslational protein targeting to membrane.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S7
    Gene namesi
    Name:rps7
    ORF Names:zgc:73216
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 20

    Organism-specific databases

    ZFINiZDB-GENE-040426-1718. rps7.

    Subcellular locationi

    GO - Cellular componenti

    1. 90S preribosome Source: RefGenome
    2. cytosolic small ribosomal subunit Source: RefGenome
    3. small-subunit processome Source: RefGenome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 19419440S ribosomal protein S7PRO_0000174193Add
    BLAST

    Proteomic databases

    PRIDEiP62084.

    Expressioni

    Gene expression databases

    BgeeiP62084.

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000062435.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S7e family.Curated

    Phylogenomic databases

    eggNOGiNOG280542.
    GeneTreeiENSGT00390000014122.
    HOGENOMiHOG000197237.
    HOVERGENiHBG001698.
    InParanoidiP62084.
    KOiK02993.
    OMAiIEVGHGK.
    OrthoDBiEOG74J997.
    PhylomeDBiP62084.
    TreeFamiTF343364.

    Family and domain databases

    InterProiIPR000554. Ribosomal_S7e.
    [Graphical view]
    PANTHERiPTHR11278. PTHR11278. 1 hit.
    PfamiPF01251. Ribosomal_S7e. 1 hit.
    [Graphical view]
    PROSITEiPS00948. RIBOSOMAL_S7E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P62084-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFSTSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELHITAAKE    50
    IEVGGSRKAI IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI 100
    LPKPTRKSRT KNKQKRPRSR TLTNVHDAIL EDLVFPSEIV GKRIRVKLDS 150
    SRLIKVHLDK AQQNNVEHKV ETFAGVYKKL TGKDVIFEFP EFQL 194
    Length:194
    Mass (Da):22,250
    Last modified:June 21, 2004 - v1
    Checksum:i5010023055B0BAD8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY561508 mRNA. Translation: AAS66961.1.
    BX276180 Genomic DNA. Translation: CAH68965.1.
    BC059562 mRNA. Translation: AAH59562.1.
    RefSeqiNP_957046.1. NM_200752.1.
    UniGeneiDr.28230.

    Genome annotation databases

    EnsembliENSDART00000126229; ENSDARP00000109497; ENSDARG00000042566.
    GeneIDi393725.
    KEGGidre:393725.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY561508 mRNA. Translation: AAS66961.1 .
    BX276180 Genomic DNA. Translation: CAH68965.1 .
    BC059562 mRNA. Translation: AAH59562.1 .
    RefSeqi NP_957046.1. NM_200752.1.
    UniGenei Dr.28230.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000062435.

    Proteomic databases

    PRIDEi P62084.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000126229 ; ENSDARP00000109497 ; ENSDARG00000042566 .
    GeneIDi 393725.
    KEGGi dre:393725.

    Organism-specific databases

    CTDi 6201.
    ZFINi ZDB-GENE-040426-1718. rps7.

    Phylogenomic databases

    eggNOGi NOG280542.
    GeneTreei ENSGT00390000014122.
    HOGENOMi HOG000197237.
    HOVERGENi HBG001698.
    InParanoidi P62084.
    KOi K02993.
    OMAi IEVGHGK.
    OrthoDBi EOG74J997.
    PhylomeDBi P62084.
    TreeFami TF343364.

    Enzyme and pathway databases

    Reactomei REACT_212254. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_220099. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_225540. SRP-dependent cotranslational protein targeting to membrane.

    Miscellaneous databases

    NextBioi 20814726.
    PROi P62084.

    Gene expression databases

    Bgeei P62084.

    Family and domain databases

    InterProi IPR000554. Ribosomal_S7e.
    [Graphical view ]
    PANTHERi PTHR11278. PTHR11278. 1 hit.
    Pfami PF01251. Ribosomal_S7e. 1 hit.
    [Graphical view ]
    PROSITEi PS00948. RIBOSOMAL_S7E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Many ribosomal protein genes are cancer genes in zebrafish."
      Amsterdam A., Sadler K.C., Lai K., Farrington S., Bronson R.T., Lees J.A., Hopkins N.
      PLoS Biol. 2:690-698(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Tuebingen.
    3. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Retina.

    Entry informationi

    Entry nameiRS7_DANRE
    AccessioniPrimary (citable) accession number: P62084
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 21, 2004
    Last sequence update: June 21, 2004
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3