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Protein

40S ribosomal protein S7

Gene

RPS7

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Required for rRNA maturation.1 Publication

GO - Molecular functioni

  • mRNA 3'-UTR binding Source: CAFA
  • mRNA 5'-UTR binding Source: CAFA
  • poly(U) RNA binding Source: Ensembl
  • protein kinase binding Source: UniProtKB
  • RNA binding Source: UniProtKB
  • structural constituent of ribosome Source: InterPro
  • ubiquitin ligase inhibitor activity Source: CAFA

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process Source: CAFA
  • negative regulation of ubiquitin protein ligase activity Source: CAFA
  • nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Source: Reactome
  • positive regulation of gene expression Source: CAFA
  • positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator Source: CAFA
  • protein stabilization Source: CAFA
  • ribosomal small subunit biogenesis Source: UniProtKB
  • rRNA processing Source: UniProtKB
  • SRP-dependent cotranslational protein targeting to membrane Source: Reactome
  • translation Source: UniProtKB
  • translational initiation Source: Reactome
  • viral transcription Source: Reactome

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-HSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-HSA-156902. Peptide chain elongation.
R-HSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-HSA-192823. Viral mRNA Translation.
R-HSA-2408557. Selenocysteine synthesis.
R-HSA-6790901. rRNA modification in the nucleus and cytosol.
R-HSA-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-HSA-72649. Translation initiation complex formation.
R-HSA-72689. Formation of a pool of free 40S subunits.
R-HSA-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-HSA-72702. Ribosomal scanning and start codon recognition.
R-HSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-HSA-72764. Eukaryotic Translation Termination.
R-HSA-9010553. Regulation of expression of SLITs and ROBOs.
R-HSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-HSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S7
Alternative name(s):
Small ribosomal subunit protein eS71 Publication
Gene namesi
Name:RPS7
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 2

Organism-specific databases

EuPathDBiHostDB:ENSG00000171863.12.
HGNCiHGNC:10440. RPS7.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

Pathology & Biotechi

Involvement in diseasei

Diamond-Blackfan anemia 8 (DBA8)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies.
See also OMIM:612563

Keywords - Diseasei

Diamond-Blackfan anemia

Organism-specific databases

DisGeNETi6201.
GeneReviewsiRPS7.
MalaCardsiRPS7.
MIMi612563. phenotype.
OpenTargetsiENSG00000171863.
Orphaneti124. Blackfan-Diamond anemia.
PharmGKBiPA34855.

Polymorphism and mutation databases

BioMutaiRPS7.
DMDMi49065831.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001741901 – 19440S ribosomal protein S7Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineCombined sources1
Cross-linki70Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources
Modified residuei74N6-acetyllysine; alternateCombined sources1
Cross-linki74Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternateCombined sources

Post-translational modificationi

Phosphorylated by NEK6.1 Publication

Keywords - PTMi

Acetylation, Isopeptide bond, Ubl conjugation

Proteomic databases

EPDiP62081.
PaxDbiP62081.
PeptideAtlasiP62081.
PRIDEiP62081.
TopDownProteomicsiP62081.

PTM databases

iPTMnetiP62081.
PhosphoSitePlusiP62081.
SwissPalmiP62081.

Miscellaneous databases

PMAP-CutDBiP62081.

Expressioni

Gene expression databases

BgeeiENSG00000171863.
CleanExiHS_RPS7.
ExpressionAtlasiP62081. baseline and differential.
GenevisibleiP62081. HS.

Organism-specific databases

HPAiHPA056586.

Interactioni

Subunit structurei

Binds IPO9 with high affinity. Interacts with NEK6.2 Publications

Binary interactionsi

Show more details

GO - Molecular functioni

  • protein kinase binding Source: UniProtKB

Protein-protein interaction databases

BioGridi112115. 176 interactors.
CORUMiP62081.
IntActiP62081. 34 interactors.
MINTiMINT-5001160.
STRINGi9606.ENSP00000339095.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4UG0electron microscopy-SH1-194[»]
4V6Xelectron microscopy5.00AH1-194[»]
5A2Qelectron microscopy3.90H1-194[»]
5AJ0electron microscopy3.50BH1-194[»]
5FLXelectron microscopy3.90H1-194[»]
5LKSelectron microscopy3.60SH1-194[»]
5OA3electron microscopy4.30H1-194[»]
5T2Celectron microscopy3.60At1-194[»]
5VYCX-ray6.00H1/H2/H3/H4/H5/H61-194[»]
ProteinModelPortaliP62081.
SMRiP62081.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi98 – 120Arg/Lys-rich (basic)Add BLAST23

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3320. Eukaryota.
ENOG410ZYKB. LUCA.
GeneTreeiENSGT00390000014122.
HOGENOMiHOG000197237.
HOVERGENiHBG001698.
InParanoidiP62081.
KOiK02993.
OMAiGFHRVQQ.
OrthoDBiEOG091G0L94.
PhylomeDBiP62081.
TreeFamiTF343364.

Family and domain databases

InterProiView protein in InterPro
IPR000554. Ribosomal_S7e.
PANTHERiPTHR11278. PTHR11278. 1 hit.
PfamiView protein in Pfam
PF01251. Ribosomal_S7e. 1 hit.
PROSITEiView protein in PROSITE
PS00948. RIBOSOMAL_S7E. 1 hit.

Sequencei

Sequence statusi: Complete.

P62081-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFSSSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELNITAAKE
60 70 80 90 100
IEVGGGRKAI IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI
110 120 130 140 150
LPKPTRKSRT KNKQKRPRSR TLTAVHDAIL EDLVFPSEIV GKRIRVKLDG
160 170 180 190
SRLIKVHLDK AQQNNVEHKV ETFSGVYKKL TGKDVNFEFP EFQL
Length:194
Mass (Da):22,127
Last modified:June 21, 2004 - v1
Checksum:iE21089929CC061E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M77233 mRNA. Translation: AAB00969.1.
Z25749 Genomic DNA. Translation: CAA81022.1.
AK311794 mRNA. Translation: BAG34737.1.
AC108488 Genomic DNA. Translation: AAX82027.1.
CH471053 Genomic DNA. Translation: EAX01057.1.
CH471053 Genomic DNA. Translation: EAX01058.1.
CH471053 Genomic DNA. Translation: EAX01059.1.
BC002866 mRNA. Translation: AAH02866.1.
BC061901 mRNA. Translation: AAH61901.1.
BC071919 mRNA. Translation: AAH71919.1.
CCDSiCCDS1648.1.
PIRiJC4388.
RefSeqiNP_001002.1. NM_001011.3.
UniGeneiHs.534346.
Hs.546287.
Hs.646582.

Genome annotation databases

EnsembliENST00000304921; ENSP00000339095; ENSG00000171863.
ENST00000403564; ENSP00000385018; ENSG00000171863.
ENST00000406376; ENSP00000385286; ENSG00000171863.
GeneIDi6201.
KEGGihsa:6201.
UCSCiuc002qxw.4. human.

Similar proteinsi

Entry informationi

Entry nameiRS7_HUMAN
AccessioniPrimary (citable) accession number: P62081
Secondary accession number(s): P23821
, P24818, Q57Z92, Q6IPH1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 21, 2004
Last sequence update: June 21, 2004
Last modified: November 22, 2017
This is version 140 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. Ribosomal proteins
    Ribosomal proteins families and list of entries
  5. SIMILARITY comments
    Index of protein domains and families