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Protein

30S ribosomal protein S12

Gene

rps12

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S12UniRule annotation
Gene namesi
Name:rps12UniRule annotation
Ordered Locus Names:PYRAB06190
ORF Names:PAB0427
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14714730S ribosomal protein S12PRO_0000146376Add
BLAST

Proteomic databases

PRIDEiP61994.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi272844.PAB0427.

Structurei

3D structure databases

ProteinModelPortaliP61994.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S12P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04255. Archaea.
COG0048. LUCA.
HOGENOMiHOG000040064.
KOiK02950.
OMAiMPGKKSP.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00403_A. Ribosomal_S12_A.
InterProiIPR012340. NA-bd_OB-fold.
IPR022863. Ribosomal_S12.
IPR006032. Ribosomal_S12/S23.
IPR005680. Ribosomal_S23_euk/arc.
[Graphical view]
PANTHERiPTHR11652. PTHR11652. 1 hit.
PfamiPF00164. Ribosom_S12_S23. 1 hit.
[Graphical view]
PIRSFiPIRSF002133. Ribosomal_S12/S23. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00982. uS12_E_A. 1 hit.

Sequencei

Sequence statusi: Complete.

P61994-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPGKKAPNGE FAGRKLKLKR KKFRWSDIRY KRRVLRLKEK SDPLEGAPQA
60 70 80 90 100
RGIVLEKIAV EAKQPNSGMR KAVRVQLIKN GKVVTAFCPG DGAIKFIDEH
110 120 130 140
DEVIIEGIGG PKGGSMGDIP GIRYKVVKVN RVSLKELVKG RKEKPRR
Length:147
Mass (Da):16,439
Last modified:June 7, 2004 - v1
Checksum:iB8E77B974B2CF5CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49541.1.
HE613800 Genomic DNA. Translation: CCE70011.1.
PIRiF75182.
RefSeqiWP_010867743.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB49541; CAB49541; PAB0427.
GeneIDi1495524.
KEGGipab:PAB0427.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49541.1.
HE613800 Genomic DNA. Translation: CCE70011.1.
PIRiF75182.
RefSeqiWP_010867743.1. NC_000868.1.

3D structure databases

ProteinModelPortaliP61994.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB0427.

Proteomic databases

PRIDEiP61994.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49541; CAB49541; PAB0427.
GeneIDi1495524.
KEGGipab:PAB0427.

Phylogenomic databases

eggNOGiarCOG04255. Archaea.
COG0048. LUCA.
HOGENOMiHOG000040064.
KOiK02950.
OMAiMPGKKSP.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00403_A. Ribosomal_S12_A.
InterProiIPR012340. NA-bd_OB-fold.
IPR022863. Ribosomal_S12.
IPR006032. Ribosomal_S12/S23.
IPR005680. Ribosomal_S23_euk/arc.
[Graphical view]
PANTHERiPTHR11652. PTHR11652. 1 hit.
PfamiPF00164. Ribosom_S12_S23. 1 hit.
[Graphical view]
PIRSFiPIRSF002133. Ribosomal_S12/S23. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00982. uS12_E_A. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GE5 / Orsay.
  2. "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
    Gao J., Wang J.
    Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: GE5 / Orsay.

Entry informationi

Entry nameiRS12_PYRAB
AccessioniPrimary (citable) accession number: P61994
Secondary accession number(s): G8ZJ84, Q9V110
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 7, 2004
Last modified: November 11, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.