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P61961 (UFM1_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 89. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ubiquitin-fold modifier 1
Gene names
Name:Ufm1
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length85 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Ubiquitin-like modifier protein which binds to a number of target proteins, such as DDRGK1 By similarity.

Subcellular location

Nucleus By similarity. Cytoplasm By similarity. Note: Predominantly nuclear. Also expressed diffusely in the cytoplasm By similarity.

Sequence similarities

Belongs to the UFM1 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 8383Ubiquitin-fold modifier 1
PRO_0000042126
Propeptide84 – 852Removed in mature form By similarity
PRO_0000042127

Amino acid modifications

Cross-link83Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) Potential

Secondary structure

.............. 85
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P61961 [UniParc].

Last modified June 7, 2004. Version 1.
Checksum: EDB2412E5E5836D8

FASTA859,118
        10         20         30         40         50         60 
MSKVSFKITL TSDPRLPYKV LSVPESTPFT AVLKFAAEEF KVPAATSAII TNDGIGINPA 

        70         80 
QTAGNVFLKH GSELRIIPRD RVGSC 

« Hide

References

« Hide 'large scale' references
[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: BALB/c and C57BL/6J.
Tissue: Mammary gland, Pancreas, Placenta and Small intestine.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain.
[3]"Solution structure of mouse hypothetical 9.1 kDa protein, a ubiquitin-like fold."
RIKEN structural genomics initiative (RSGI)
Submitted (NOV-2002) to the PDB data bank
Cited for: STRUCTURE BY NMR.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK007788 mRNA. Translation: BAB25255.1.
AK008280 mRNA. Translation: BAB25572.1.
AK089948 mRNA. Translation: BAC41011.1.
AK148146 mRNA. Translation: BAE28374.1.
AK166332 mRNA. Translation: BAE38712.1.
AK167301 mRNA. Translation: BAE39406.1.
AK167321 mRNA. Translation: BAE39423.1.
BC061065 mRNA. Translation: AAH61065.1.
CCDSCCDS38430.1.
RefSeqNP_080711.1. NM_026435.5.
UniGeneMm.23067.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1J0GNMR-A1-85[»]
ProteinModelPortalP61961.
SMRP61961. Positions 1-85.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteP61961.

Proteomic databases

MaxQBP61961.
PaxDbP61961.
PRIDEP61961.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000146598; ENSMUSP00000118478; ENSMUSG00000027746.
GeneID67890.
KEGGmmu:67890.
UCSCuc008pfa.2. mouse.

Organism-specific databases

CTD51569.
MGIMGI:1915140. Ufm1.

Phylogenomic databases

eggNOGNOG249065.
GeneTreeENSGT00390000010391.
HOGENOMHOG000185753.
HOVERGENHBG094129.
InParanoidP61961.
KOK12162.
OrthoDBEOG7Q8CQW.
PhylomeDBP61961.
TreeFamTF312934.

Gene expression databases

ArrayExpressP61961.
BgeeP61961.
CleanExMM_UFM1.
GenevestigatorP61961.

Family and domain databases

InterProIPR029071. Ubiquitin-rel_dom.
IPR005375. UFM1.
[Graphical view]
PfamPF03671. Ufm1. 1 hit.
[Graphical view]
PIRSFPIRSF038027. Ubiquitin-like_Ufm1. 1 hit.
SUPFAMSSF54236. SSF54236. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP61961.
NextBio325858.
PROP61961.
SOURCESearch...

Entry information

Entry nameUFM1_MOUSE
AccessionPrimary (citable) accession number: P61961
Secondary accession number(s): Q14346 expand/collapse secondary AC list , Q3TLT0, Q542A7, Q9CPX2, Q9NZF2
Entry history
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 7, 2004
Last modified: July 9, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot