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P61961

- UFM1_MOUSE

UniProt

P61961 - UFM1_MOUSE

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Protein

Ubiquitin-fold modifier 1

Gene
Ufm1
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Ubiquitin-like modifier protein which binds to a number of target proteins, such as DDRGK1 By similarity.

GO - Biological processi

  1. protein ufmylation Source: UniProtKB
  2. response to endoplasmic reticulum stress Source: MGI
Complete GO annotation...

Keywords - Biological processi

Ubl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Ubiquitin-fold modifier 1
Gene namesi
Name:Ufm1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 3

Organism-specific databases

MGIiMGI:1915140. Ufm1.

Subcellular locationi

Nucleus By similarity. Cytoplasm By similarity
Note: Predominantly nuclear. Also expressed diffusely in the cytoplasm By similarity.

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB
  2. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8383Ubiquitin-fold modifier 1PRO_0000042126Add
BLAST
Propeptidei84 – 852Removed in mature form By similarityPRO_0000042127

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Cross-linki83 – 83Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) Reviewed prediction

Keywords - PTMi

Isopeptide bond

Proteomic databases

MaxQBiP61961.
PaxDbiP61961.
PRIDEiP61961.

PTM databases

PhosphoSiteiP61961.

Expressioni

Gene expression databases

ArrayExpressiP61961.
BgeeiP61961.
CleanExiMM_UFM1.
GenevestigatoriP61961.

Structurei

Secondary structure

1
85
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 108
Beta strandi18 – 247
Helixi29 – 3911
Beta strandi44 – 507
Beta strandi60 – 623
Helixi63 – 697
Beta strandi72 – 787

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1J0GNMR-A1-85[»]
ProteinModelPortaliP61961.
SMRiP61961. Positions 1-85.

Miscellaneous databases

EvolutionaryTraceiP61961.

Family & Domainsi

Sequence similaritiesi

Belongs to the UFM1 family.

Phylogenomic databases

eggNOGiNOG249065.
GeneTreeiENSGT00390000010391.
HOGENOMiHOG000185753.
HOVERGENiHBG094129.
InParanoidiP61961.
KOiK12162.
OrthoDBiEOG7Q8CQW.
PhylomeDBiP61961.
TreeFamiTF312934.

Family and domain databases

InterProiIPR029071. Ubiquitin-rel_dom.
IPR005375. UFM1.
[Graphical view]
PfamiPF03671. Ufm1. 1 hit.
[Graphical view]
PIRSFiPIRSF038027. Ubiquitin-like_Ufm1. 1 hit.
SUPFAMiSSF54236. SSF54236. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P61961-1 [UniParc]FASTAAdd to Basket

« Hide

MSKVSFKITL TSDPRLPYKV LSVPESTPFT AVLKFAAEEF KVPAATSAII   50
TNDGIGINPA QTAGNVFLKH GSELRIIPRD RVGSC 85
Length:85
Mass (Da):9,118
Last modified:June 7, 2004 - v1
Checksum:iEDB2412E5E5836D8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007788 mRNA. Translation: BAB25255.1.
AK008280 mRNA. Translation: BAB25572.1.
AK089948 mRNA. Translation: BAC41011.1.
AK148146 mRNA. Translation: BAE28374.1.
AK166332 mRNA. Translation: BAE38712.1.
AK167301 mRNA. Translation: BAE39406.1.
AK167321 mRNA. Translation: BAE39423.1.
BC061065 mRNA. Translation: AAH61065.1.
CCDSiCCDS38430.1.
RefSeqiNP_080711.1. NM_026435.5.
UniGeneiMm.23067.

Genome annotation databases

EnsembliENSMUST00000146598; ENSMUSP00000118478; ENSMUSG00000027746.
GeneIDi67890.
KEGGimmu:67890.
UCSCiuc008pfa.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007788 mRNA. Translation: BAB25255.1 .
AK008280 mRNA. Translation: BAB25572.1 .
AK089948 mRNA. Translation: BAC41011.1 .
AK148146 mRNA. Translation: BAE28374.1 .
AK166332 mRNA. Translation: BAE38712.1 .
AK167301 mRNA. Translation: BAE39406.1 .
AK167321 mRNA. Translation: BAE39423.1 .
BC061065 mRNA. Translation: AAH61065.1 .
CCDSi CCDS38430.1.
RefSeqi NP_080711.1. NM_026435.5.
UniGenei Mm.23067.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1J0G NMR - A 1-85 [» ]
ProteinModelPortali P61961.
SMRi P61961. Positions 1-85.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei P61961.

Proteomic databases

MaxQBi P61961.
PaxDbi P61961.
PRIDEi P61961.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000146598 ; ENSMUSP00000118478 ; ENSMUSG00000027746 .
GeneIDi 67890.
KEGGi mmu:67890.
UCSCi uc008pfa.2. mouse.

Organism-specific databases

CTDi 51569.
MGIi MGI:1915140. Ufm1.

Phylogenomic databases

eggNOGi NOG249065.
GeneTreei ENSGT00390000010391.
HOGENOMi HOG000185753.
HOVERGENi HBG094129.
InParanoidi P61961.
KOi K12162.
OrthoDBi EOG7Q8CQW.
PhylomeDBi P61961.
TreeFami TF312934.

Miscellaneous databases

EvolutionaryTracei P61961.
NextBioi 325858.
PROi P61961.
SOURCEi Search...

Gene expression databases

ArrayExpressi P61961.
Bgeei P61961.
CleanExi MM_UFM1.
Genevestigatori P61961.

Family and domain databases

InterProi IPR029071. Ubiquitin-rel_dom.
IPR005375. UFM1.
[Graphical view ]
Pfami PF03671. Ufm1. 1 hit.
[Graphical view ]
PIRSFi PIRSF038027. Ubiquitin-like_Ufm1. 1 hit.
SUPFAMi SSF54236. SSF54236. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: BALB/c and C57BL/6J.
    Tissue: Mammary gland, Pancreas, Placenta and Small intestine.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.
  3. "Solution structure of mouse hypothetical 9.1 kDa protein, a ubiquitin-like fold."
    RIKEN structural genomics initiative (RSGI)
    Submitted (NOV-2002) to the PDB data bank
    Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiUFM1_MOUSE
AccessioniPrimary (citable) accession number: P61961
Secondary accession number(s): Q14346
, Q3TLT0, Q542A7, Q9CPX2, Q9NZF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 7, 2004
Last modified: July 9, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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