P61812 (TGFB2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 113.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Transforming growth factor beta-2 Short name=TGF-beta-2 Alternative name(s): BSC-1 cell growth inhibitor Cetermin Glioblastoma-derived T-cell suppressor factor Short name=G-TSF Polyergin Cleaved into the following chain:
| ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 414 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | TGF-beta 2 has suppressive effects on interleukin-2 dependent T-cell growth. |
| Subunit structure | Homodimer; disulfide-linked By similarity. Heterodimers with TGFB1 and with TGFB3 have been found in bone By similarity. Interacts with the serine proteases, HTRA1 and HTRA3 By similarity. Latency-associated peptide interacts with NREP; the interaction results in a decrease in TGFB2 autoinduction By similarity. Interacts with ASPN. Ref.11 |
| Subcellular location | |
| Post-translational modification | The precursor is cleaved into mature TGF-beta-2 and LAP, which remains non-covalently linked to mature TGF-beta-2 rendering it inactive By similarity. |
| Involvement in disease | A chromosomal aberration involving TGFB2 is found in a family with Peters anomaly. Translocation t(1;7)(q41;p21) with HDAC9. Loeys-Dietz syndrome 4 (LDS4) [MIM:614816]: An aortic aneurysm syndrome with widespread systemic involvement. LDS4 is characterized by arterial tortuosity, aortic dissection, intracranial aneurysm and subarachnoid hemorrhage, hypertelorism, bifid uvula, pectus deformity, bicuspid aortic valve, arachnodactyly, scoliosis, foot deformities, dural ectasia, joint hyperflexibility, and thin skin with easy bruising and striae. |
| Sequence similarities | Belongs to the TGF-beta family. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| APP | P05067 | 6 | EBI-779581,EBI-77613 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform A (identifier: P61812-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform B (identifier: P61812-2) The sequence of this isoform differs from the canonical sequence as follows: 116-116: N → TVCPVVTTPSGSVGSLCSRQSQVLCGYLD |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 20 | 20 | Potential | ||||||||||||||||||||||||||||||||
| Chain | 21 – 302 | 282 | Latency-associated peptide | PRO_0000033784 | |||||||||||||||||||||||||||||||
| Chain | 303 – 414 | 112 | Transforming growth factor beta-2 | PRO_0000033785 | |||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||
| Glycosylation | 72 | 1 | N-linked (GlcNAc...) Potential | ||||||||||||||||||||||||||||||||
| Glycosylation | 140 | 1 | N-linked (GlcNAc...) Potential | ||||||||||||||||||||||||||||||||
| Glycosylation | 241 | 1 | N-linked (GlcNAc...) Potential | ||||||||||||||||||||||||||||||||
| Disulfide bond | 309 ↔ 318 | ||||||||||||||||||||||||||||||||||
| Disulfide bond | 317 ↔ 380 | ||||||||||||||||||||||||||||||||||
| Disulfide bond | 346 ↔ 411 | ||||||||||||||||||||||||||||||||||
| Disulfide bond | 350 ↔ 413 | ||||||||||||||||||||||||||||||||||
| Disulfide bond | 379 | Interchain | |||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||
| Alternative sequence | 116 | 1 | N → TVCPVVTTPSGSVGSLCSRQ SQVLCGYLD in isoform B. | VSP_006417 | |||||||||||||||||||||||||||||||
| Natural variant | 91 | 1 | R → H. Ref.4 Ref.14 Corresponds to variant rs10482721 [ dbSNP | Ensembl ]. | VAR_012708 | |||||||||||||||||||||||||||||||
| Natural variant | 100 – 104 | 5 | Missing in LDS4. | VAR_068931 | |||||||||||||||||||||||||||||||
| Natural variant | 207 | 1 | V → L. Ref.4 Corresponds to variant rs10482810 [ dbSNP | Ensembl ]. | VAR_018923 | |||||||||||||||||||||||||||||||
| Natural variant | 299 | 1 | R → W in LDS4. Ref.15 | VAR_068932 | |||||||||||||||||||||||||||||||
| Natural variant | 302 | 1 | R → C in LDS4. Ref.15 | VAR_068933 | |||||||||||||||||||||||||||||||
| Natural variant | 338 | 1 | P → H in LDS4. Ref.15 | VAR_068934 | |||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||
| Sequence conflict | 32 | 1 | F → L in AAA61162. Ref.8 | ||||||||||||||||||||||||||||||||
| Sequence conflict | 116 | 1 | Missing in AAA50405. Ref.3 | ||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||
| Helix | 306 – 309 | 4 | |||||||||||||||||||||||||||||||||
| Beta strand | 315 – 320 | 6 | |||||||||||||||||||||||||||||||||
| Beta strand | 323 – 325 | 3 | |||||||||||||||||||||||||||||||||
| Helix | 326 – 330 | 5 | |||||||||||||||||||||||||||||||||
| Beta strand | 335 – 337 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 339 – 342 | 4 | |||||||||||||||||||||||||||||||||
| Beta strand | 345 – 347 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 354 – 356 | 3 | |||||||||||||||||||||||||||||||||
| Helix | 359 – 370 | 12 | |||||||||||||||||||||||||||||||||
| Helix | 372 – 374 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 379 – 382 | 4 | |||||||||||||||||||||||||||||||||
| Beta strand | 384 – 394 | 11 | |||||||||||||||||||||||||||||||||
| Beta strand | 397 – 408 | 12 | |||||||||||||||||||||||||||||||||
| Beta strand | 411 – 414 | 4 | |||||||||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Complementary DNA for human glioblastoma-derived T cell suppressor factor, a novel member of the transforming growth factor-beta gene family." de Martin R., Haendler B., Hofer-Warbinek R., Gaugitsch H., Wrann M., Schluesener H., Seifert J.M., Bodmer S., Fontana A., Hofer E. EMBO J. 6:3673-3677(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [2] | "Transforming growth factor-beta 2: cDNA cloning and sequence analysis." Madisen L., Webb N.R., Rose T.M., Marquardt H., Ikeda T., Twardzik D.R., Seyedin S., Purchio A.F. DNA 7:1-8(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B). |
| [3] | "Structural and sequence analysis of TGF-beta 2 cDNA clones predicts two different precursor proteins produced by alternative mRNA splicing." Webb N.R., Madisen L., Rose T.M., Purchio A.F. DNA 7:493-497(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A AND B). |
| [4] | NIEHS SNPs program Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS HIS-91 AND LEU-207. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B). Tissue: Thalamus. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [8] | "Molecular cloning and structure of the human transforming growth factor-beta 2 gene promoter." Noma T., Glick A.B., Geiser A.G., O'Reilly M.A., Miller J., Roberts A.B., Sporn M.B. Growth Factors 4:247-255(1991) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-115. Tissue: Lung. |
| [9] | "Complete amino acid sequence of human transforming growth factor type beta 2." Marquardt H., Lioubin M.N., Ikeda T. J. Biol. Chem. 262:12127-12131(1987) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 303-414. |
| [10] | "Molecular characterization of a familial translocation implicates disruption of HDAC9 and possible position effect on TGFbeta2 in the pathogenesis of Peters' anomaly." David D., Cardoso J., Marques B., Marques R., Silva E.D., Santos H., Boavida M.G. Genomics 81:489-503(2003) [PubMed] [Europe PMC] [Abstract] Cited for: CHROMOSOMAL TRANSLOCATION WITH HDAC9. |
| [11] | "Mechanisms for asporin function and regulation in articular cartilage." Nakajima M., Kizawa H., Saitoh M., Kou I., Miyazono K., Ikegawa S. J. Biol. Chem. 282:32185-32192(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ASPN. |
| [12] | "Crystal structure of transforming growth factor-beta 2: an unusual fold for the superfamily." Daopin S., Piez K.A., Ogawa Y., Davies D.R. Science 257:369-373(1992) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS). |
| [13] | "An unusual feature revealed by the crystal structure at 2.2-A resolution of human transforming growth factor-beta 2." Schlunegger M.P., Gruetter M.G. Nature 358:430-434(1992) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS). |
| [14] | "Two novel polymorphisms in the human transforming growth factor beta 2 gene." Alansari A., Hajeer A.H., Bayat A., Eyre S., Carthy D., Ollier W.E. Genes Immun. 2:295-296(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT HIS-91. |
| [15] | "Loss-of-function mutations in TGFB2 cause a syndromic presentation of thoracic aortic aneurysm." Lindsay M.E., Schepers D., Bolar N.A., Doyle J.J., Gallo E., Fert-Bober J., Kempers M.J., Fishman E.K., Chen Y., Myers L., Bjeda D., Oswald G., Elias A.F., Levy H.P., Anderlid B.M., Yang M.H., Bongers E.M., Timmermans J. Loeys B.L.Nat. Genet. 44:922-927(2012) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LDS4 100-ALA--TYR-104 DEL; TRP-299; CYS-302 AND HIS-338. |
| + | Additional computationally mapped references. |
Web resources
| NIEHS-SNPs |
| Wikipedia TGF beta-2 entry |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | Y00083 mRNA. Translation: CAA68279.1. M19154 mRNA. Translation: AAA50404.1. M19154 mRNA. Translation: AAA50405.1. AY438979 Genomic DNA. Translation: AAR05442.1. AK296504 mRNA. Translation: BAG59137.1. CH471100 Genomic DNA. Translation: EAW93326.1. BC096235 mRNA. Translation: AAH96235.1. BC099635 mRNA. Translation: AAH99635.1. M87843 Genomic DNA. Translation: AAA61162.1. | ||||||||||||||||||
| IPI | IPI00220156. IPI00235354. | ||||||||||||||||||
| PIR | B31249. A29478. A31249. S06216. | ||||||||||||||||||
| RefSeq | NP_001129071.1. NM_001135599.2. NP_003229.1. NM_003238.3. | ||||||||||||||||||
| UniGene | Hs.133379. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| ProteinModelPortal | P61812. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| DIP | DIP-5936N. | ||||||||||||||||||
| IntAct | P61812. 1 interaction. | ||||||||||||||||||
| STRING | 9606.ENSP00000355896. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | P61812. | ||||||||||||||||||
Polymorphism databases | |||||||||||||||||||
| DMDM | 48429157. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PaxDb | P61812. | ||||||||||||||||||
| PRIDE | P61812. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000366929; ENSP00000355896; ENSG00000092969. ENST00000366930; ENSP00000355897; ENSG00000092969. | ||||||||||||||||||
| GeneID | 7042. | ||||||||||||||||||
| KEGG | hsa:7042. | ||||||||||||||||||
| UCSC | uc001hlm.3. human. uc001hln.3. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 7042. | ||||||||||||||||||
| GeneCards | GC01P218519. | ||||||||||||||||||
| HGNC | HGNC:11768. TGFB2. | ||||||||||||||||||
| MIM | 190220. gene. 614816. phenotype. | ||||||||||||||||||
| neXtProt | NX_P61812. | ||||||||||||||||||
| Orphanet | 708. Peters anomaly. | ||||||||||||||||||
| PharmGKB | PA36482. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | NOG269146. | ||||||||||||||||||
| HOGENOM | HOG000290198. | ||||||||||||||||||
| HOVERGEN | HBG074115. | ||||||||||||||||||
| KO | K13376. | ||||||||||||||||||
| OMA | RAATCER. | ||||||||||||||||||
| OrthoDB | EOG43TZVH. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| Pathway_Interaction_DB | glypican_1pathway. Glypican 1 network. hedgehog_2pathway. Signaling events mediated by the Hedgehog family. tgfbrpathway. TGF-beta receptor signaling. | ||||||||||||||||||
| Reactome | REACT_118779. Extracellular matrix organization. REACT_604. Hemostasis. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| Bgee | P61812. | ||||||||||||||||||
| CleanEx | HS_TGFB2. | ||||||||||||||||||
| Genevestigator | P61812. | ||||||||||||||||||
| GermOnline | ENSG00000092969. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR001839. TGF-b_C. IPR001111. TGF-b_N. IPR016319. TGF-beta. IPR015615. TGF-beta-rel. IPR003940. TGFb2. IPR017948. TGFb_CS. [Graphical view] | ||||||||||||||||||
| PANTHER | PTHR11848. PTHR11848. 1 hit. | ||||||||||||||||||
| Pfam | PF00019. TGF_beta. 1 hit. PF00688. TGFb_propeptide. 1 hit. [Graphical view] | ||||||||||||||||||
| PIRSF | PIRSF001787. TGF-beta. 1 hit. | ||||||||||||||||||
| PRINTS | PR01423. TGFBETA. PR01425. TGFBETA2. | ||||||||||||||||||
| SMART | SM00204. TGFB. 1 hit. [Graphical view] | ||||||||||||||||||
| PROSITE | PS00250. TGF_BETA_1. 1 hit. PS51362. TGF_BETA_2. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other | |||||||||||||||||||
| ChiTaRS | TGFB2. human. | ||||||||||||||||||
| EvolutionaryTrace | P61812. | ||||||||||||||||||
| GenomeRNAi | 7042. | ||||||||||||||||||
| NextBio | 27517. | ||||||||||||||||||
| PMAP-CutDB | P61812. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | TGFB2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P61812 Secondary accession number(s): B4DKC5 Q4VAV9 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
