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Protein

Insulin gene enhancer protein ISL-1

Gene

Isl1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Binds and regulates the promoters of the insulin, glucagon and somatostatin genes. Involved in the specificarion of motor neurons in cooperation with LHX3 and LDB1.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi181 – 24060HomeoboxPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • atrial septum morphogenesis Source: BHF-UCL
  • axon regeneration Source: Ensembl
  • cardiac cell fate determination Source: MGI
  • cardiac muscle cell myoblast differentiation Source: MGI
  • cardiac right ventricle morphogenesis Source: BHF-UCL
  • cellular response to glucocorticoid stimulus Source: Ensembl
  • endocardial cushion morphogenesis Source: BHF-UCL
  • heart development Source: MGI
  • heart morphogenesis Source: MGI
  • innervation Source: BHF-UCL
  • mesenchymal cell differentiation Source: MGI
  • negative regulation of canonical Wnt signaling pathway Source: MGI
  • negative regulation of inflammatory response Source: BHF-UCL
  • negative regulation of intracellular estrogen receptor signaling pathway Source: Ensembl
  • negative regulation of neuron apoptotic process Source: BHF-UCL
  • negative regulation of neuron differentiation Source: MGI
  • negative regulation of protein homodimerization activity Source: Ensembl
  • negative regulation of transcription, DNA-templated Source: UniProtKB
  • negative regulation of transcription from RNA polymerase II promoter Source: BHF-UCL
  • neural crest cell migration Source: MGI
  • neuron differentiation Source: MGI
  • neuron fate commitment Source: MGI
  • neuron fate specification Source: BHF-UCL
  • outflow tract morphogenesis Source: BHF-UCL
  • outflow tract septum morphogenesis Source: BHF-UCL
  • pancreas development Source: MGI
  • peripheral nervous system neuron axonogenesis Source: BHF-UCL
  • peripheral nervous system neuron development Source: MGI
  • pharyngeal system development Source: BHF-UCL
  • pituitary gland development Source: MGI
  • positive regulation of angiogenesis Source: BHF-UCL
  • positive regulation of cell proliferation Source: MGI
  • positive regulation of DNA binding Source: MGI
  • positive regulation of granulocyte colony-stimulating factor production Source: BHF-UCL
  • positive regulation of granulocyte macrophage colony-stimulating factor production Source: BHF-UCL
  • positive regulation of histone acetylation Source: CACAO
  • positive regulation of insulin secretion Source: Ensembl
  • positive regulation of interferon-gamma production Source: BHF-UCL
  • positive regulation of interleukin-12 production Source: BHF-UCL
  • positive regulation of interleukin-1 alpha production Source: BHF-UCL
  • positive regulation of interleukin-1 beta production Source: BHF-UCL
  • positive regulation of interleukin-6 production Source: BHF-UCL
  • positive regulation of macrophage colony-stimulating factor production Source: BHF-UCL
  • positive regulation of transcription from RNA polymerase II promoter Source: BHF-UCL
  • positive regulation of tumor necrosis factor production Source: BHF-UCL
  • positive regulation of tyrosine phosphorylation of Stat3 protein Source: MGI
  • positive regulation of vascular endothelial growth factor production Source: BHF-UCL
  • regulation of gene expression Source: MGI
  • regulation of secondary heart field cardioblast proliferation Source: MGI
  • retinal ganglion cell axon guidance Source: MGI
  • secondary heart field specification Source: MGI
  • sensory system development Source: BHF-UCL
  • spinal cord motor neuron cell fate specification Source: MGI
  • spinal cord motor neuron differentiation Source: MGI
  • trigeminal nerve development Source: BHF-UCL
  • ventricular cardiac muscle tissue morphogenesis Source: BHF-UCL
  • visceral motor neuron differentiation Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Insulin gene enhancer protein ISL-1
Short name:
Islet-1
Gene namesi
Name:Isl1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:101791. Isl1.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation1 Publication

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 349349Insulin gene enhancer protein ISL-1PRO_0000075748Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei269 – 2691PhosphoserineBy similarity

Post-translational modificationi

Phosphorylated.1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP61372.
PaxDbiP61372.
PRIDEiP61372.

PTM databases

iPTMnetiP61372.
PhosphoSiteiP61372.

Expressioni

Gene expression databases

BgeeiP61372.
CleanExiMM_ISL1.
ExpressionAtlasiP61372. baseline and differential.
GenevisibleiP61372. MM.

Interactioni

Subunit structurei

At neuronal promoters, displaces LDB1 from LHX3 LIM domain to form a ternary complex in which ISL1 contacts both LHX3 and LDB1.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
Ldb1P706623EBI-7988215,EBI-6272082
Lhx3P504817EBI-7988215,EBI-7988290

GO - Molecular functioni

Protein-protein interaction databases

BioGridi200812. 3 interactions.
IntActiP61372. 2 interactions.
MINTiMINT-4594016.
STRINGi10090.ENSMUSP00000044879.

Structurei

Secondary structure

1
349
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi127 – 1293Combined sources
Turni130 – 1323Combined sources
Beta strandi263 – 2664Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2RGTX-ray2.05A/B262-291[»]
4JCJX-ray3.00A/B/C123-138[»]
ProteinModelPortaliP61372.
SMRiP61372. Positions 13-168, 180-244, 254-288.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP61372.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini17 – 7054LIM zinc-binding 1PROSITE-ProRule annotationAdd
BLAST
Domaini79 – 13355LIM zinc-binding 2PROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni262 – 29130LIM-binding domain (LID)Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi241 – 349109Gln-richAdd
BLAST

Sequence similaritiesi

Contains 1 homeobox DNA-binding domain.PROSITE-ProRule annotation
Contains 2 LIM zinc-binding domains.PROSITE-ProRule annotation

Keywords - Domaini

Homeobox, LIM domain, Repeat

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00760000118921.
HOGENOMiHOG000236304.
HOVERGENiHBG004671.
InParanoidiP61372.
KOiK09370.
OMAiTDMGDMG.
OrthoDBiEOG7JQBPW.
PhylomeDBiP61372.
TreeFamiTF315442.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform Alpha (identifier: P61372-1) [UniParc]FASTAAdd to basket

Also known as: Isl1-alpha

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGDMGDPPKK KRLISLCVGC GNQIHDQYIL RVSPDLEWHA ACLKCAECNQ
60 70 80 90 100
YLDESCTCFV RDGKTYCKRD YIRLYGIKCA KCSIGFSKND FVMRARSKVY
110 120 130 140 150
HIECFRCVAC SRQLIPGDEF ALREDGLFCR ADHDVVERAS LGAGDPLSPL
160 170 180 190 200
HPARPLQMAA EPISARQPAL RPHVHKQPEK TTRVRTVLNE KQLHTLRTCY
210 220 230 240 250
AANPRPDALM KEQLVEMTGL SPRVIRVWFQ NKRCKDKKRS IMMKQLQQQQ
260 270 280 290 300
PNDKTNIQGM TGTPMVAASP ERHDGGLQAN PVEVQSYQPP WKVLSDFALQ
310 320 330 340
SDIDQPAFQQ LVNFSEGGPG SNSTGSEVAS MSSQLPDTPN SMVASPIEA
Length:349
Mass (Da):39,036
Last modified:May 24, 2004 - v1
Checksum:i4DB82FD09154F404
GO
Isoform Beta (identifier: P61372-2) [UniParc]FASTAAdd to basket

Also known as: Isl1-beta

The sequence of this isoform differs from the canonical sequence as follows:
     256-278: Missing.

Note: Preferentially expressed in insulinoma cell lines. Expression is much lower than that of isoform alpha.
Show »
Length:326
Mass (Da):36,686
Checksum:i226972F6D190C598
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei256 – 27823Missing in isoform Beta. 1 PublicationVSP_010338Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ132765 mRNA. Translation: CAB38446.1.
AB104633 mRNA. Translation: BAC57891.1.
CCDSiCCDS26790.1. [P61372-1]
RefSeqiNP_067434.3. NM_021459.4. [P61372-1]
XP_006517596.1. XM_006517533.2. [P61372-2]
UniGeneiMm.42242.

Genome annotation databases

EnsembliENSMUST00000036060; ENSMUSP00000044879; ENSMUSG00000042258. [P61372-1]
ENSMUST00000176044; ENSMUSP00000135567; ENSMUSG00000042258. [P61372-2]
GeneIDi16392.
KEGGimmu:16392.
UCSCiuc007rye.2. mouse. [P61372-1]
uc007ryf.2. mouse. [P61372-2]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ132765 mRNA. Translation: CAB38446.1.
AB104633 mRNA. Translation: BAC57891.1.
CCDSiCCDS26790.1. [P61372-1]
RefSeqiNP_067434.3. NM_021459.4. [P61372-1]
XP_006517596.1. XM_006517533.2. [P61372-2]
UniGeneiMm.42242.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2RGTX-ray2.05A/B262-291[»]
4JCJX-ray3.00A/B/C123-138[»]
ProteinModelPortaliP61372.
SMRiP61372. Positions 13-168, 180-244, 254-288.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi200812. 3 interactions.
IntActiP61372. 2 interactions.
MINTiMINT-4594016.
STRINGi10090.ENSMUSP00000044879.

PTM databases

iPTMnetiP61372.
PhosphoSiteiP61372.

Proteomic databases

MaxQBiP61372.
PaxDbiP61372.
PRIDEiP61372.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000036060; ENSMUSP00000044879; ENSMUSG00000042258. [P61372-1]
ENSMUST00000176044; ENSMUSP00000135567; ENSMUSG00000042258. [P61372-2]
GeneIDi16392.
KEGGimmu:16392.
UCSCiuc007rye.2. mouse. [P61372-1]
uc007ryf.2. mouse. [P61372-2]

Organism-specific databases

CTDi3670.
MGIiMGI:101791. Isl1.

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00760000118921.
HOGENOMiHOG000236304.
HOVERGENiHBG004671.
InParanoidiP61372.
KOiK09370.
OMAiTDMGDMG.
OrthoDBiEOG7JQBPW.
PhylomeDBiP61372.
TreeFamiTF315442.

Miscellaneous databases

EvolutionaryTraceiP61372.
PROiP61372.
SOURCEiSearch...

Gene expression databases

BgeeiP61372.
CleanExiMM_ISL1.
ExpressionAtlasiP61372. baseline and differential.
GenevisibleiP61372. MM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Isolation and characterization of an alternatively spliced variant of transcription factor Islet-1."
    Ando K., Shioda S., Handa H., Kataoka K.
    J. Mol. Endocrinol. 31:419-425(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM BETA), FUNCTION, ALTERNATIVE SPLICING, SUBCELLULAR LOCATION, PHOSPHORYLATION.
  2. "Mouse Isl1 cDNA."
    Koehler K., Dear T.N.
    Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM ALPHA).
    Strain: C57BL/6J.
  3. "Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes."
    Bhati M., Lee C., Nancarrow A.L., Lee M., Craig V.J., Bach I., Guss J.M., Mackay J.P., Matthews J.M.
    EMBO J. 27:2018-2029(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 262-291 IN COMPLEX WITH LHX3.

Entry informationi

Entry nameiISL1_MOUSE
AccessioniPrimary (citable) accession number: P61372
Secondary accession number(s): P20663, P47894, Q812D8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 24, 2004
Last sequence update: May 24, 2004
Last modified: July 6, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.