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P61320

- LOLB_ECOLI

UniProt

P61320 - LOLB_ECOLI

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Protein
Outer-membrane lipoprotein LolB
Gene
lolB, hemM, ychC, b1209, JW1200
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. Essential for E.coli viability.UniRule annotation

GO - Molecular functioni

  1. lipoprotein particle receptor activity Source: EcoCyc
  2. protein transporter activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. receptor-mediated endocytosis Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Protein transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:EG11293-MONOMER.
ECOL316407:JW1200-MONOMER.

Protein family/group databases

TCDBi1.B.46.1.1. the outer membrane lolab lipoprotein insertion apparatus (lolab) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Outer-membrane lipoprotein LolB
Gene namesi
Name:lolB
Synonyms:hemM, ychC
Ordered Locus Names:b1209, JW1200
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11293. lolB.

Subcellular locationi

GO - Cellular componenti

  1. cell outer membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121UniRule annotation
Add
BLAST
Chaini22 – 207186Outer-membrane lipoprotein LolBUniRule annotation
PRO_0000018296Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi22 – 221N-palmitoyl cysteine1 Publication
Lipidationi22 – 221S-diacylglycerol cysteine Inferred

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP61320.
PRIDEiP61320.

Expressioni

Gene expression databases

GenevestigatoriP61320.

Interactioni

Subunit structurei

Monomer.

Protein-protein interaction databases

DIPiDIP-35933N.
IntActiP61320. 7 interactions.
MINTiMINT-7259909.
STRINGi511145.b1209.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi34 – 363
Helixi37 – 4711
Beta strandi51 – 6111
Beta strandi66 – 7611
Turni77 – 793
Beta strandi80 – 867
Beta strandi92 – 998
Beta strandi102 – 1065
Beta strandi112 – 1165
Helixi118 – 1269
Helixi132 – 1387
Turni139 – 1413
Beta strandi149 – 1513
Beta strandi157 – 16610
Beta strandi168 – 1736
Beta strandi180 – 1823
Beta strandi187 – 1915
Beta strandi196 – 20712

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1IWMX-ray1.90A/B22-207[»]
1IWNX-ray2.20A22-207[»]
ProteinModelPortaliP61320.
SMRiP61320. Positions 31-207.

Miscellaneous databases

EvolutionaryTraceiP61320.

Family & Domainsi

Sequence similaritiesi

Belongs to the LolB family.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3017.
HOGENOMiHOG000119778.
KOiK02494.
OMAiYQTRGSF.
OrthoDBiEOG6R5C6M.

Family and domain databases

HAMAPiMF_00233. LolB.
InterProiIPR029046. LolA/LolB/LppX.
IPR004565. OM_lipoprot_LolB.
[Graphical view]
PfamiPF03550. LolB. 1 hit.
[Graphical view]
SUPFAMiSSF89392. SSF89392. 1 hit.
TIGRFAMsiTIGR00548. lolB. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P61320-1 [UniParc]FASTAAdd to Basket

« Hide

MPLPDFRLIR LLPLAALVLT ACSVTTPKGP GKSPDSPQWR QHQQDVRNLN    50
QYQTRGAFAY ISDQQKVYAR FFWQQTGQDR YRLLLTNPLG STELELNAQP 100
GNVQLVDNKG QRYTADDAEE MIGKLTGMPI PLNSLRQWIL GLPGDATDYK 150
LDDQYRLSEI TYSQNGKNWK VVYGGYDTKT QPAMPANMEL TDGGQRIKLK 200
MDNWIVK 207
Length:207
Mass (Da):23,551
Last modified:May 10, 2004 - v1
Checksum:iC517F6E7353B8551
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti12 – 121L → V in BAA01105. 1 Publication
Sequence conflicti41 – 422QH → HD in AAC43435. 1 Publication
Sequence conflicti176 – 20732YDTKT…NWIVK → MTPKRNLRCQPIWNSPTVVN ASS in AAC43435. 1 Publication
Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M77237 Genomic DNA. Translation: AAA24433.1.
D10264 Genomic DNA. Translation: BAA01105.1.
U18555 Genomic DNA. Translation: AAC43435.1.
U00096 Genomic DNA. Translation: AAC74293.1.
AP009048 Genomic DNA. Translation: BAA36067.1.
PIRiA47706.
RefSeqiNP_415727.1. NC_000913.3.
YP_489476.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74293; AAC74293; b1209.
BAA36067; BAA36067; BAA36067.
GeneIDi12931820.
945775.
KEGGiecj:Y75_p1181.
eco:b1209.
PATRICi32117670. VBIEscCol129921_1257.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M77237 Genomic DNA. Translation: AAA24433.1 .
D10264 Genomic DNA. Translation: BAA01105.1 .
U18555 Genomic DNA. Translation: AAC43435.1 .
U00096 Genomic DNA. Translation: AAC74293.1 .
AP009048 Genomic DNA. Translation: BAA36067.1 .
PIRi A47706.
RefSeqi NP_415727.1. NC_000913.3.
YP_489476.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1IWM X-ray 1.90 A/B 22-207 [» ]
1IWN X-ray 2.20 A 22-207 [» ]
ProteinModelPortali P61320.
SMRi P61320. Positions 31-207.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-35933N.
IntActi P61320. 7 interactions.
MINTi MINT-7259909.
STRINGi 511145.b1209.

Protein family/group databases

TCDBi 1.B.46.1.1. the outer membrane lolab lipoprotein insertion apparatus (lolab) family.

Proteomic databases

PaxDbi P61320.
PRIDEi P61320.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC74293 ; AAC74293 ; b1209 .
BAA36067 ; BAA36067 ; BAA36067 .
GeneIDi 12931820.
945775.
KEGGi ecj:Y75_p1181.
eco:b1209.
PATRICi 32117670. VBIEscCol129921_1257.

Organism-specific databases

EchoBASEi EB1270.
EcoGenei EG11293. lolB.

Phylogenomic databases

eggNOGi COG3017.
HOGENOMi HOG000119778.
KOi K02494.
OMAi YQTRGSF.
OrthoDBi EOG6R5C6M.

Enzyme and pathway databases

BioCyci EcoCyc:EG11293-MONOMER.
ECOL316407:JW1200-MONOMER.

Miscellaneous databases

EvolutionaryTracei P61320.
PROi P61320.

Gene expression databases

Genevestigatori P61320.

Family and domain databases

HAMAPi MF_00233. LolB.
InterProi IPR029046. LolA/LolB/LppX.
IPR004565. OM_lipoprot_LolB.
[Graphical view ]
Pfami PF03550. LolB. 1 hit.
[Graphical view ]
SUPFAMi SSF89392. SSF89392. 1 hit.
TIGRFAMsi TIGR00548. lolB. 1 hit.
PROSITEi PS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of genes involved in the biosynthesis of delta-aminolevulinic acid in Escherichia coli."
    Ikemi M., Murakami K., Hashimoto M., Murooka Y.
    Gene 121:127-132(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Characterization of the hemA-prs region of the Escherichia coli and Salmonella typhimurium chromosomes: identification of two open reading frames and implications for prs expression."
    Post D.A., Hove-Jensen B., Switzer R.L.
    J. Gen. Microbiol. 139:259-266(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  3. "Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12."
    Strohmaier H., Remler P., Renner W., Hoegenauer G.
    J. Bacteriol. 177:4488-4500(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  6. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  7. "A novel outer membrane lipoprotein, LolB (HemM), involved in the LolA (p20)-dependent localization of lipoproteins to the outer membrane of Escherichia coli."
    Matsuyama S., Yokota N., Tokuda H.
    EMBO J. 16:6947-6955(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHARACTERIZATION, DIACYLGLYCEROL AT CYS-22, PALMITOYLATION AT CYS-22, PARTIAL PROTEIN SEQUENCE.
  8. "Deletion of lolB, encoding an outer membrane lipoprotein, is lethal for Escherichia coli and causes accumulation of lipoprotein localization intermediates in the periplasm."
    Tanaka K., Matsuyama S., Tokuda H.
    J. Bacteriol. 183:6538-6542(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: IMPORTANCE FOR VIABILITY.
    Strain: K12.
  9. "Crystal structures of bacterial lipoprotein localization factors, LolA and LolB."
    Takeda K., Miyatake H., Yokota N., Matsuyama S., Tokuda H., Miki K.
    EMBO J. 22:3199-3209(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS).

Entry informationi

Entry nameiLOLB_ECOLI
AccessioniPrimary (citable) accession number: P61320
Secondary accession number(s): P24208, Q46753
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: May 10, 2004
Last modified: July 9, 2014
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally (1 Publication) thought to be involved in delta-aminolevulinic acid biosynthesis.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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