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P61216

- TAF13_MOUSE

UniProt

P61216 - TAF13_MOUSE

Protein

Transcription initiation factor TFIID subunit 13

Gene

Taf13

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    TFIID beta-specific TAFII.By similarity

    GO - Molecular functioni

    1. DNA binding Source: MGI
    2. protein binding Source: MGI

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription from RNA polymerase II promoter Source: InterPro

    Keywords - Biological processi

    Transcription, Transcription regulation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Transcription initiation factor TFIID subunit 13
    Alternative name(s):
    Transcription initiation factor TFIID 18 kDa subunit
    Short name:
    TAF(II)18
    Short name:
    TAFII-18
    Short name:
    TAFII18
    Gene namesi
    Name:Taf13
    Synonyms:Taf2k
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 3

    Organism-specific databases

    MGIiMGI:1913500. Taf13.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleolus Source: Ensembl
    2. nucleus Source: MGI
    3. transcription factor TFIID complex Source: Ensembl

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 124124Transcription initiation factor TFIID subunit 13PRO_0000118911Add
    BLAST

    Proteomic databases

    PRIDEiP61216.

    PTM databases

    PhosphoSiteiP61216.

    Expressioni

    Gene expression databases

    BgeeiP61216.
    GenevestigatoriP61216.

    Interactioni

    Subunit structurei

    TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). Interacts with TBP, and more strongly with TAF10 and TAF11 By similarity.By similarity

    Protein-protein interaction databases

    BioGridi221311. 3 interactions.
    IntActiP61216. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliP61216.
    SMRiP61216. Positions 31-75.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domaini

    The binding of TAF10 and TAF11 requires distinct domains of TAF13.By similarity

    Sequence similaritiesi

    Belongs to the TAF13 family.Curated
    Contains 1 histone-fold domain.Curated

    Phylogenomic databases

    eggNOGiCOG5248.
    GeneTreeiENSGT00390000012981.
    HOGENOMiHOG000237827.
    HOVERGENiHBG055385.
    InParanoidiP61216.
    KOiK03127.
    OMAiKYARVKD.
    OrthoDBiEOG773XJ8.
    PhylomeDBiP61216.
    TreeFamiTF323609.

    Family and domain databases

    Gene3Di1.10.20.10. 1 hit.
    InterProiIPR009072. Histone-fold.
    IPR003195. TFIID-18.
    [Graphical view]
    PANTHERiPTHR11380. PTHR11380. 1 hit.
    PfamiPF02269. TFIID-18kDa. 1 hit.
    [Graphical view]
    SUPFAMiSSF47113. SSF47113. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P61216-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADEEEDPTF EEENEEIGGG AEGGQGKRKR LFSKELRCMM YGFGDDQNPY    50
    TESVDILEDL VIEFITEMTH KAMSIGRQGR VQVEDIVFLI RKDPRKFARV 100
    KDLLTMNEEL KRARKAFDEA NYGS 124
    Length:124
    Mass (Da):14,287
    Last modified:May 10, 2004 - v1
    Checksum:i98B62FF1BC8E7B77
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK007339 mRNA. Translation: BAB24972.1.
    AK076595 mRNA. Translation: BAC36408.1.
    AK160171 mRNA. Translation: BAE35671.1.
    BC021447 mRNA. Translation: AAH21447.1.
    CCDSiCCDS17764.1.
    RefSeqiNP_079720.1. NM_025444.2.
    UniGeneiMm.24431.

    Genome annotation databases

    EnsembliENSMUST00000143054; ENSMUSP00000121346; ENSMUSG00000048100.
    GeneIDi99730.
    KEGGimmu:99730.
    UCSCiuc008qzh.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK007339 mRNA. Translation: BAB24972.1 .
    AK076595 mRNA. Translation: BAC36408.1 .
    AK160171 mRNA. Translation: BAE35671.1 .
    BC021447 mRNA. Translation: AAH21447.1 .
    CCDSi CCDS17764.1.
    RefSeqi NP_079720.1. NM_025444.2.
    UniGenei Mm.24431.

    3D structure databases

    ProteinModelPortali P61216.
    SMRi P61216. Positions 31-75.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 221311. 3 interactions.
    IntActi P61216. 1 interaction.

    PTM databases

    PhosphoSitei P61216.

    Proteomic databases

    PRIDEi P61216.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000143054 ; ENSMUSP00000121346 ; ENSMUSG00000048100 .
    GeneIDi 99730.
    KEGGi mmu:99730.
    UCSCi uc008qzh.1. mouse.

    Organism-specific databases

    CTDi 6884.
    MGIi MGI:1913500. Taf13.

    Phylogenomic databases

    eggNOGi COG5248.
    GeneTreei ENSGT00390000012981.
    HOGENOMi HOG000237827.
    HOVERGENi HBG055385.
    InParanoidi P61216.
    KOi K03127.
    OMAi KYARVKD.
    OrthoDBi EOG773XJ8.
    PhylomeDBi P61216.
    TreeFami TF323609.

    Miscellaneous databases

    NextBioi 354095.
    PROi P61216.
    SOURCEi Search...

    Gene expression databases

    Bgeei P61216.
    Genevestigatori P61216.

    Family and domain databases

    Gene3Di 1.10.20.10. 1 hit.
    InterProi IPR009072. Histone-fold.
    IPR003195. TFIID-18.
    [Graphical view ]
    PANTHERi PTHR11380. PTHR11380. 1 hit.
    Pfami PF02269. TFIID-18kDa. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47113. SSF47113. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Pancreas, Small intestine and Testis.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N.
      Tissue: Liver.

    Entry informationi

    Entry nameiTAF13_MOUSE
    AccessioniPrimary (citable) accession number: P61216
    Secondary accession number(s): Q3TVE8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 10, 2004
    Last sequence update: May 10, 2004
    Last modified: October 1, 2014
    This is version 89 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3