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P61216

- TAF13_MOUSE

UniProt

P61216 - TAF13_MOUSE

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Protein

Transcription initiation factor TFIID subunit 13

Gene

Taf13

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

TFIID beta-specific TAFII.By similarity

GO - Molecular functioni

  1. DNA binding Source: MGI

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription from RNA polymerase II promoter Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 13
Alternative name(s):
Transcription initiation factor TFIID 18 kDa subunit
Short name:
TAF(II)18
Short name:
TAFII-18
Short name:
TAFII18
Gene namesi
Name:Taf13
Synonyms:Taf2k
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 3

Organism-specific databases

MGIiMGI:1913500. Taf13.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleolus Source: Ensembl
  2. nucleus Source: MGI
  3. transcription factor TFIID complex Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 124124Transcription initiation factor TFIID subunit 13PRO_0000118911Add
BLAST

Proteomic databases

PRIDEiP61216.

PTM databases

PhosphoSiteiP61216.

Expressioni

Gene expression databases

BgeeiP61216.
GenevestigatoriP61216.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). Interacts with TBP, and more strongly with TAF10 and TAF11 By similarity.By similarity

Protein-protein interaction databases

BioGridi221311. 3 interactions.
IntActiP61216. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliP61216.
SMRiP61216. Positions 31-75.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

The binding of TAF10 and TAF11 requires distinct domains of TAF13.By similarity

Sequence similaritiesi

Belongs to the TAF13 family.Curated
Contains 1 histone-fold domain.Curated

Phylogenomic databases

eggNOGiCOG5248.
GeneTreeiENSGT00390000012981.
HOGENOMiHOG000237827.
HOVERGENiHBG055385.
InParanoidiP61216.
KOiK03127.
OMAiKYARVKD.
OrthoDBiEOG773XJ8.
PhylomeDBiP61216.
TreeFamiTF323609.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR003195. TFIID-18.
[Graphical view]
PANTHERiPTHR11380. PTHR11380. 1 hit.
PfamiPF02269. TFIID-18kDa. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequencei

Sequence statusi: Complete.

P61216-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MADEEEDPTF EEENEEIGGG AEGGQGKRKR LFSKELRCMM YGFGDDQNPY
60 70 80 90 100
TESVDILEDL VIEFITEMTH KAMSIGRQGR VQVEDIVFLI RKDPRKFARV
110 120
KDLLTMNEEL KRARKAFDEA NYGS
Length:124
Mass (Da):14,287
Last modified:May 10, 2004 - v1
Checksum:i98B62FF1BC8E7B77
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007339 mRNA. Translation: BAB24972.1.
AK076595 mRNA. Translation: BAC36408.1.
AK160171 mRNA. Translation: BAE35671.1.
BC021447 mRNA. Translation: AAH21447.1.
CCDSiCCDS17764.1.
RefSeqiNP_079720.1. NM_025444.2.
UniGeneiMm.24431.

Genome annotation databases

EnsembliENSMUST00000143054; ENSMUSP00000121346; ENSMUSG00000048100.
GeneIDi99730.
KEGGimmu:99730.
UCSCiuc008qzh.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007339 mRNA. Translation: BAB24972.1 .
AK076595 mRNA. Translation: BAC36408.1 .
AK160171 mRNA. Translation: BAE35671.1 .
BC021447 mRNA. Translation: AAH21447.1 .
CCDSi CCDS17764.1.
RefSeqi NP_079720.1. NM_025444.2.
UniGenei Mm.24431.

3D structure databases

ProteinModelPortali P61216.
SMRi P61216. Positions 31-75.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 221311. 3 interactions.
IntActi P61216. 1 interaction.

PTM databases

PhosphoSitei P61216.

Proteomic databases

PRIDEi P61216.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000143054 ; ENSMUSP00000121346 ; ENSMUSG00000048100 .
GeneIDi 99730.
KEGGi mmu:99730.
UCSCi uc008qzh.1. mouse.

Organism-specific databases

CTDi 6884.
MGIi MGI:1913500. Taf13.

Phylogenomic databases

eggNOGi COG5248.
GeneTreei ENSGT00390000012981.
HOGENOMi HOG000237827.
HOVERGENi HBG055385.
InParanoidi P61216.
KOi K03127.
OMAi KYARVKD.
OrthoDBi EOG773XJ8.
PhylomeDBi P61216.
TreeFami TF323609.

Miscellaneous databases

NextBioi 354095.
PROi P61216.
SOURCEi Search...

Gene expression databases

Bgeei P61216.
Genevestigatori P61216.

Family and domain databases

Gene3Di 1.10.20.10. 1 hit.
InterProi IPR009072. Histone-fold.
IPR003195. TFIID-18.
[Graphical view ]
PANTHERi PTHR11380. PTHR11380. 1 hit.
Pfami PF02269. TFIID-18kDa. 1 hit.
[Graphical view ]
SUPFAMi SSF47113. SSF47113. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Pancreas, Small intestine and Testis.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Liver.

Entry informationi

Entry nameiTAF13_MOUSE
AccessioniPrimary (citable) accession number: P61216
Secondary accession number(s): Q3TVE8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: May 10, 2004
Last modified: October 29, 2014
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3