Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0311 protein RPA1785

Gene

RPA1785

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0311 protein RPA1785UniRule annotation
Gene namesi
Ordered Locus Names:RPA1785
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 153153UPF0311 protein RPA1785PRO_0000108124Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA1785.

Structurei

Secondary structure

1
153
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 1711Combined sources
Beta strandi21 – 255Combined sources
Beta strandi27 – 4317Combined sources
Beta strandi46 – 505Combined sources
Beta strandi55 – 606Combined sources
Beta strandi66 – 7611Combined sources
Beta strandi81 – 9111Combined sources
Helixi94 – 985Combined sources
Beta strandi110 – 12011Combined sources
Helixi124 – 1307Combined sources
Beta strandi134 – 1407Combined sources
Beta strandi142 – 15211Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C5OX-ray2.20A/B/C/D1-153[»]
ProteinModelPortaliP61167.
SMRiP61167. Positions 1-153.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP61167.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0311 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105NI3. Bacteria.
ENOG4111XT6. LUCA.
HOGENOMiHOG000078987.
OMAiFETGHPN.
OrthoDBiEOG6MWN9T.
PhylomeDBiP61167.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
HAMAPiMF_00775. UPF0311.
InterProiIPR011250. OMP/PagP_b-brl.
IPR020915. UPF0311.
[Graphical view]
PfamiPF11578. DUF3237. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P61167-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPTLETKYV FTITARIGDV TSAGEIGTGV RRIIPILGGE VKGEGISGQV
60 70 80 90 100
LPFGADFQII RPNELIELEA KYAFETDDGA VVYVENVGIR FGPVELLRKL
110 120 130 140 150
KRGEPVDPKV IYFRTRPRFE TGHPNYQWLM QYLFVGSAAR HADRVVIDVH

QVL
Length:153
Mass (Da):17,116
Last modified:May 10, 2004 - v1
Checksum:iBFAFA3E4C6CD6DD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572598 Genomic DNA. Translation: CAE27226.1.
RefSeqiWP_011157291.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE27226; CAE27226; RPA1785.
KEGGirpa:RPA1785.
PATRICi23287849. VBIRhoPal84835_1861.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572598 Genomic DNA. Translation: CAE27226.1.
RefSeqiWP_011157291.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C5OX-ray2.20A/B/C/D1-153[»]
ProteinModelPortaliP61167.
SMRiP61167. Positions 1-153.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA1785.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE27226; CAE27226; RPA1785.
KEGGirpa:RPA1785.
PATRICi23287849. VBIRhoPal84835_1861.

Phylogenomic databases

eggNOGiENOG4105NI3. Bacteria.
ENOG4111XT6. LUCA.
HOGENOMiHOG000078987.
OMAiFETGHPN.
OrthoDBiEOG6MWN9T.
PhylomeDBiP61167.

Miscellaneous databases

EvolutionaryTraceiP61167.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
HAMAPiMF_00775. UPF0311.
InterProiIPR011250. OMP/PagP_b-brl.
IPR020915. UPF0311.
[Graphical view]
PfamiPF11578. DUF3237. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-98 / CGA009.

Entry informationi

Entry nameiY1785_RHOPA
AccessioniPrimary (citable) accession number: P61167
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: May 10, 2004
Last modified: December 9, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.