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Protein

UPF0311 protein RPA1785

Gene

RPA1785

Organism
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciRPAL258594:G13CN-1797-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0311 protein RPA1785UniRule annotation
Gene namesi
Ordered Locus Names:RPA1785
OrganismiRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Taxonomic identifieri258594 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001426 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001081241 – 153UPF0311 protein RPA1785Add BLAST153

Interactioni

Protein-protein interaction databases

STRINGi258594.RPA1785.

Structurei

Secondary structure

1153
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 17Combined sources11
Beta strandi21 – 25Combined sources5
Beta strandi27 – 43Combined sources17
Beta strandi46 – 50Combined sources5
Beta strandi55 – 60Combined sources6
Beta strandi66 – 76Combined sources11
Beta strandi81 – 91Combined sources11
Helixi94 – 98Combined sources5
Beta strandi110 – 120Combined sources11
Helixi124 – 130Combined sources7
Beta strandi134 – 140Combined sources7
Beta strandi142 – 152Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C5OX-ray2.20A/B/C/D1-153[»]
ProteinModelPortaliP61167.
SMRiP61167.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP61167.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0311 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105NI3. Bacteria.
ENOG4111XT6. LUCA.
HOGENOMiHOG000078987.
OMAiFETGHPN.
OrthoDBiPOG091H0V4P.
PhylomeDBiP61167.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
HAMAPiMF_00775. UPF0311. 1 hit.
InterProiIPR011250. OMP/PagP_b-brl.
IPR020915. UPF0311.
[Graphical view]
PfamiPF11578. DUF3237. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P61167-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPTLETKYV FTITARIGDV TSAGEIGTGV RRIIPILGGE VKGEGISGQV
60 70 80 90 100
LPFGADFQII RPNELIELEA KYAFETDDGA VVYVENVGIR FGPVELLRKL
110 120 130 140 150
KRGEPVDPKV IYFRTRPRFE TGHPNYQWLM QYLFVGSAAR HADRVVIDVH

QVL
Length:153
Mass (Da):17,116
Last modified:May 10, 2004 - v1
Checksum:iBFAFA3E4C6CD6DD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572598 Genomic DNA. Translation: CAE27226.1.
RefSeqiWP_011157291.1. NC_005296.1.

Genome annotation databases

EnsemblBacteriaiCAE27226; CAE27226; RPA1785.
KEGGirpa:RPA1785.
PATRICi23287849. VBIRhoPal84835_1861.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX572598 Genomic DNA. Translation: CAE27226.1.
RefSeqiWP_011157291.1. NC_005296.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C5OX-ray2.20A/B/C/D1-153[»]
ProteinModelPortaliP61167.
SMRiP61167.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi258594.RPA1785.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE27226; CAE27226; RPA1785.
KEGGirpa:RPA1785.
PATRICi23287849. VBIRhoPal84835_1861.

Phylogenomic databases

eggNOGiENOG4105NI3. Bacteria.
ENOG4111XT6. LUCA.
HOGENOMiHOG000078987.
OMAiFETGHPN.
OrthoDBiPOG091H0V4P.
PhylomeDBiP61167.

Enzyme and pathway databases

BioCyciRPAL258594:G13CN-1797-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP61167.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
HAMAPiMF_00775. UPF0311. 1 hit.
InterProiIPR011250. OMP/PagP_b-brl.
IPR020915. UPF0311.
[Graphical view]
PfamiPF11578. DUF3237. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1785_RHOPA
AccessioniPrimary (citable) accession number: P61167
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: May 10, 2004
Last modified: November 2, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.