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Protein

30S ribosomal protein S28e

Gene

rps28e

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1498-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S28e
Gene namesi
Name:rps28e
Ordered Locus Names:PH1495.2
ORF Names:PHS040
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 717130S ribosomal protein S28ePRO_0000136858Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi70601.PHS040.

Structurei

Secondary structure

1
71
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 147Combined sources
Beta strandi20 – 3617Combined sources
Beta strandi40 – 478Combined sources
Beta strandi54 – 563Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NY4NMR-A1-71[»]
ProteinModelPortaliP61030.
SMRiP61030. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP61030.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S28e family.Curated

Phylogenomic databases

eggNOGiarCOG04314. Archaea.
COG2053. LUCA.
HOGENOMiHOG000224552.
KOiK02979.
OMAiMHGEASQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P61030-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEDEGYPAE VIEIIGRTGT TGDVTQVKVR ILEGRDKGRV IRRNVRGPVR
60 70
VGDILILRET EREAREIKSR R
Length:71
Mass (Da):8,086
Last modified:April 26, 2004 - v1
Checksum:i59D9E88DF6923097
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30603.1.
PIRiC71025.
RefSeqiWP_010867791.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30603; BAA30603; BAA30603.
GeneIDi1495574.
KEGGipho:PHS040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30603.1.
PIRiC71025.
RefSeqiWP_010867791.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NY4NMR-A1-71[»]
ProteinModelPortaliP61030.
SMRiP61030. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PHS040.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30603; BAA30603; BAA30603.
GeneIDi1495574.
KEGGipho:PHS040.

Phylogenomic databases

eggNOGiarCOG04314. Archaea.
COG2053. LUCA.
HOGENOMiHOG000224552.
KOiK02979.
OMAiMHGEASQ.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1498-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP61030.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3.
  2. Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiRS28_PYRHO
AccessioniPrimary (citable) accession number: P61030
Secondary accession number(s): O74014
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: April 26, 2004
Last modified: November 11, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.