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Protein

Putative transport protein YbjL

Gene

ybjL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:G6445-MONOMER.
ECOL316407:JW0831-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transport protein YbjLUniRule annotation
Gene namesi
Name:ybjLUniRule annotation
Ordered Locus Names:b0847, JW0831
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13681. ybjL.

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei8 – 2821HelicalUniRule annotationAdd
BLAST
Transmembranei32 – 5221HelicalUniRule annotationAdd
BLAST
Transmembranei66 – 8621HelicalUniRule annotationAdd
BLAST
Transmembranei94 – 11421HelicalUniRule annotationAdd
BLAST
Transmembranei158 – 17821HelicalUniRule annotationAdd
BLAST
Transmembranei383 – 40321HelicalUniRule annotationAdd
BLAST
Transmembranei406 – 42621HelicalUniRule annotationAdd
BLAST
Transmembranei451 – 47121HelicalUniRule annotationAdd
BLAST
Transmembranei475 – 49521HelicalUniRule annotationAdd
BLAST
Transmembranei540 – 56021HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 561561Putative transport protein YbjLPRO_0000208782Add
BLAST

Proteomic databases

PaxDbiP60869.
PRIDEiP60869.

Interactioni

Protein-protein interaction databases

BioGridi4260759. 137 interactions.
STRINGi511145.b0847.

Structurei

3D structure databases

ProteinModelPortaliP60869.
SMRiP60869. Positions 215-286, 301-372.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini200 – 28889RCK C-terminal 1UniRule annotationAdd
BLAST
Domaini292 – 37382RCK C-terminal 2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the AAE transporter (TC 2.A.81) family. YbjL subfamily. [View classification]UniRule annotation
Contains 2 RCK C-terminal domains.UniRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105D0C. Bacteria.
COG2985. LUCA.
HOGENOMiHOG000218047.
InParanoidiP60869.
KOiK07085.
OMAiRDGKNYF.
OrthoDBiEOG632CZH.
PhylomeDBiP60869.

Family and domain databases

Gene3Di3.30.70.1450. 2 hits.
HAMAPiMF_01015. YbjL.
InterProiIPR006037. RCK_C.
IPR023017. Transp_YbjL_put.
IPR006512. YidE_YbjL.
[Graphical view]
PfamiPF06826. Asp-Al_Ex. 2 hits.
PF02080. TrkA_C. 2 hits.
[Graphical view]
SUPFAMiSSF116726. SSF116726. 2 hits.
TIGRFAMsiTIGR01625. YidE_YbjL_dupl. 2 hits.
PROSITEiPS51202. RCK_C. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60869-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNINVAELLN GNYILLLFVV LALGLCLGKL RLGSIQLGNS IGVLVVSLLL
60 70 80 90 100
GQQHFSINTD ALNLGFMLFI FCVGVEAGPN FFSIFFRDGK NYLMLALVMV
110 120 130 140 150
GSALVIALGL GKLFGWDIGL TAGMLAGSMT STPVLVGAGD TLRHSGMESR
160 170 180 190 200
QLSLALDNLS LGYALTYLIG LVSLIVGARY LPKLQHQDLQ TSAQQIARER
210 220 230 240 250
GLDTDANRKV YLPVIRAYRV GPELVAWTDG KNLRELGIYR QTGCYIERIR
260 270 280 290 300
RNGILANPDG DAVLQMGDEI ALVGYPDAHA RLDPSFRNGK EVFDRDLLDM
310 320 330 340 350
RIVTEEVVVK NHNAVGKRLA QLKLTDHGCF LNRVIRSQIE MPIDDNVVLN
360 370 380 390 400
KGDVLQVSGD ARRVKTIADR IGFISIHSQV TDLLAFCAFF VIGLMIGMIT
410 420 430 440 450
FQFSTFSFGM GNAAGLLFAG IMLGFMRANH PTFGYIPQGA LSMVKEFGLM
460 470 480 490 500
VFMAGVGLSA GSGINNGLGA IGGQMLIAGL IVSLVPVVIC FLFGAYVLRM
510 520 530 540 550
NRALLFGAMM GARTCAPAME IISDTARSNI PALGYAGTYA IANVLLTLAG
560
TIIVMVWPGL G
Length:561
Mass (Da):60,351
Last modified:April 13, 2004 - v1
Checksum:i9FD6F8CA67945F85
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti522 – 5265ISDTA → TLKCI in BAA07424 (PubMed:8755878).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73934.1.
AP009048 Genomic DNA. Translation: BAA35551.1.
D38308 Genomic DNA. Translation: BAA07424.1.
PIRiG64822.
RefSeqiNP_415368.1. NC_000913.3.
WP_001024876.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC73934; AAC73934; b0847.
BAA35551; BAA35551; BAA35551.
GeneIDi945474.
KEGGiecj:JW0831.
eco:b0847.
PATRICi32116899. VBIEscCol129921_0875.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73934.1.
AP009048 Genomic DNA. Translation: BAA35551.1.
D38308 Genomic DNA. Translation: BAA07424.1.
PIRiG64822.
RefSeqiNP_415368.1. NC_000913.3.
WP_001024876.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP60869.
SMRiP60869. Positions 215-286, 301-372.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260759. 137 interactions.
STRINGi511145.b0847.

Proteomic databases

PaxDbiP60869.
PRIDEiP60869.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73934; AAC73934; b0847.
BAA35551; BAA35551; BAA35551.
GeneIDi945474.
KEGGiecj:JW0831.
eco:b0847.
PATRICi32116899. VBIEscCol129921_0875.

Organism-specific databases

EchoBASEiEB3445.
EcoGeneiEG13681. ybjL.

Phylogenomic databases

eggNOGiENOG4105D0C. Bacteria.
COG2985. LUCA.
HOGENOMiHOG000218047.
InParanoidiP60869.
KOiK07085.
OMAiRDGKNYF.
OrthoDBiEOG632CZH.
PhylomeDBiP60869.

Enzyme and pathway databases

BioCyciEcoCyc:G6445-MONOMER.
ECOL316407:JW0831-MONOMER.

Miscellaneous databases

PROiP60869.

Family and domain databases

Gene3Di3.30.70.1450. 2 hits.
HAMAPiMF_01015. YbjL.
InterProiIPR006037. RCK_C.
IPR023017. Transp_YbjL_put.
IPR006512. YidE_YbjL.
[Graphical view]
PfamiPF06826. Asp-Al_Ex. 2 hits.
PF02080. TrkA_C. 2 hits.
[Graphical view]
SUPFAMiSSF116726. SSF116726. 2 hits.
TIGRFAMsiTIGR01625. YidE_YbjL_dupl. 2 hits.
PROSITEiPS51202. RCK_C. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase."
    Zenno S., Koike H., Kumar A.N., Jayaraman R., Tanokura M., Saigo K.
    J. Bacteriol. 178:4508-4514(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 396-527.
    Strain: K12 / AB1157.

Entry informationi

Entry nameiYBJL_ECOLI
AccessioniPrimary (citable) accession number: P60869
Secondary accession number(s): P71206, P75812
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: April 13, 2004
Last modified: May 11, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.