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Protein

Putative transport protein YbjL

Gene

ybjL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport

Enzyme and pathway databases

BioCyciEcoCyc:G6445-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transport protein YbjLUniRule annotation
Gene namesi
Name:ybjLUniRule annotation
Ordered Locus Names:b0847, JW0831
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13681 ybjL

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei8 – 28HelicalUniRule annotationAdd BLAST21
Transmembranei32 – 52HelicalUniRule annotationAdd BLAST21
Transmembranei66 – 86HelicalUniRule annotationAdd BLAST21
Transmembranei94 – 114HelicalUniRule annotationAdd BLAST21
Transmembranei158 – 178HelicalUniRule annotationAdd BLAST21
Transmembranei383 – 403HelicalUniRule annotationAdd BLAST21
Transmembranei406 – 426HelicalUniRule annotationAdd BLAST21
Transmembranei451 – 471HelicalUniRule annotationAdd BLAST21
Transmembranei475 – 495HelicalUniRule annotationAdd BLAST21
Transmembranei540 – 560HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002087821 – 561Putative transport protein YbjLAdd BLAST561

Proteomic databases

PaxDbiP60869
PRIDEiP60869

Interactioni

Protein-protein interaction databases

BioGridi4260759, 141 interactors
STRINGi316385.ECDH10B_0917

Structurei

3D structure databases

ProteinModelPortaliP60869
SMRiP60869
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini200 – 288RCK C-terminal 1UniRule annotationAdd BLAST89
Domaini292 – 373RCK C-terminal 2UniRule annotationAdd BLAST82

Sequence similaritiesi

Belongs to the AAE transporter (TC 2.A.81) family. YbjL subfamily. [View classification]UniRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105D0C Bacteria
COG2985 LUCA
HOGENOMiHOG000218047
InParanoidiP60869
KOiK07085
OMAiRDGKNYF
PhylomeDBiP60869

Family and domain databases

Gene3Di3.30.70.1450, 2 hits
HAMAPiMF_01015 YbjL, 1 hit
InterProiView protein in InterPro
IPR006037 RCK_C
IPR036721 RCK_C_sf
IPR023017 Transp_YbjL_put
IPR006512 YidE_YbjL
PfamiView protein in Pfam
PF06826 Asp-Al_Ex, 2 hits
PF02080 TrkA_C, 2 hits
SUPFAMiSSF116726 SSF116726, 2 hits
TIGRFAMsiTIGR01625 YidE_YbjL_dupl, 2 hits
PROSITEiView protein in PROSITE
PS51202 RCK_C, 2 hits

Sequencei

Sequence statusi: Complete.

P60869-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNINVAELLN GNYILLLFVV LALGLCLGKL RLGSIQLGNS IGVLVVSLLL
60 70 80 90 100
GQQHFSINTD ALNLGFMLFI FCVGVEAGPN FFSIFFRDGK NYLMLALVMV
110 120 130 140 150
GSALVIALGL GKLFGWDIGL TAGMLAGSMT STPVLVGAGD TLRHSGMESR
160 170 180 190 200
QLSLALDNLS LGYALTYLIG LVSLIVGARY LPKLQHQDLQ TSAQQIARER
210 220 230 240 250
GLDTDANRKV YLPVIRAYRV GPELVAWTDG KNLRELGIYR QTGCYIERIR
260 270 280 290 300
RNGILANPDG DAVLQMGDEI ALVGYPDAHA RLDPSFRNGK EVFDRDLLDM
310 320 330 340 350
RIVTEEVVVK NHNAVGKRLA QLKLTDHGCF LNRVIRSQIE MPIDDNVVLN
360 370 380 390 400
KGDVLQVSGD ARRVKTIADR IGFISIHSQV TDLLAFCAFF VIGLMIGMIT
410 420 430 440 450
FQFSTFSFGM GNAAGLLFAG IMLGFMRANH PTFGYIPQGA LSMVKEFGLM
460 470 480 490 500
VFMAGVGLSA GSGINNGLGA IGGQMLIAGL IVSLVPVVIC FLFGAYVLRM
510 520 530 540 550
NRALLFGAMM GARTCAPAME IISDTARSNI PALGYAGTYA IANVLLTLAG
560
TIIVMVWPGL G
Length:561
Mass (Da):60,351
Last modified:April 13, 2004 - v1
Checksum:i9FD6F8CA67945F85
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti522 – 526ISDTA → TLKCI in BAA07424 (PubMed:8755878).Curated5

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73934.1
AP009048 Genomic DNA Translation: BAA35551.1
D38308 Genomic DNA Translation: BAA07424.1
PIRiG64822
RefSeqiNP_415368.1, NC_000913.3
WP_001024876.1, NZ_CP014272.1

Genome annotation databases

EnsemblBacteriaiAAC73934; AAC73934; b0847
BAA35551; BAA35551; BAA35551
GeneIDi945474
KEGGiecj:JW0831
eco:b0847
PATRICifig|1411691.4.peg.1431

Similar proteinsi

Entry informationi

Entry nameiYBJL_ECOLI
AccessioniPrimary (citable) accession number: P60869
Secondary accession number(s): P71206, P75812
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: April 13, 2004
Last modified: March 28, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
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