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Protein

40S ribosomal protein S20

Gene

Rps20

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S20
Gene namesi
Name:Rps20
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 3, Chromosome 5, Chromosome 9

Organism-specific databases

RGDi621037. Rps20.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 11911840S ribosomal protein S20PRO_0000146685Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanineBy similarity
Modified residuei8 – 81N6-succinyllysine; alternateBy similarity
Cross-linki8 – 8Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternateBy similarity
Modified residuei9 – 91PhosphothreonineBy similarity
Modified residuei34 – 341N6-acetyllysineBy similarity
Modified residuei75 – 751N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP60868.
PRIDEiP60868.

PTM databases

iPTMnetiP60868.
PhosphoSiteiP60868.

Expressioni

Gene expression databases

GenevisibleiP60868. RN.

Interactioni

Subunit structurei

Component of the 40S small ribosomal subunit.By similarity

Protein-protein interaction databases

BioGridi250778. 3 interactions.
IntActiP60868. 2 interactions.
MINTiMINT-4133186.
STRINGi10116.ENSRNOP00000066077.

Structurei

3D structure databases

ProteinModelPortaliP60868.
SMRiP60868. Positions 17-117.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.Curated

Phylogenomic databases

eggNOGiKOG0900. Eukaryota.
COG0051. LUCA.
GeneTreeiENSGT00390000003248.
HOGENOMiHOG000270245.
HOVERGENiHBG004448.
InParanoidiP60868.
KOiK02969.
OMAiYELKIHK.
OrthoDBiEOG7KH9MQ.
PhylomeDBiP60868.
TreeFamiTF300222.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60868-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFKDTGKTP VEPEVAIHRI RITLTSRNVK SLEKVCADLI RGAKEKNLKV
60 70 80 90 100
KGPVRMPTKT LRITTRKTPC GEGSKTWDRF QMRIHKRLID LHSPSEIVKQ
110
ITSISIEPGV EVEVTIADA
Length:119
Mass (Da):13,373
Last modified:April 13, 2004 - v1
Checksum:i8802DF7894ADDF94
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51537 mRNA. Translation: CAA35917.1.
BC058496 mRNA. Translation: AAH58496.1.
PIRiS14682. R3RT20.
RefSeqiNP_001007604.1. NM_001007603.2.
XP_002726693.1. XM_002726647.3.
XP_002727194.1. XM_002727148.4.
XP_002729204.1. XM_002729158.4.
XP_002729620.1. XM_002729574.4.
XP_002730040.1. XM_002729994.4.
XP_003753765.1. XM_003753717.3.
UniGeneiRn.103133.

Genome annotation databases

EnsembliENSRNOT00000040481; ENSRNOP00000066077; ENSRNOG00000030596.
ENSRNOT00000041813; ENSRNOP00000065886; ENSRNOG00000029627.
ENSRNOT00000051449; ENSRNOP00000069127; ENSRNOG00000030345.
GeneIDi100359951.
100362149.
100362684.
122772.
KEGGirno:100359951.
rno:100362149.
rno:100362684.
rno:122772.
UCSCiRGD:621037. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51537 mRNA. Translation: CAA35917.1.
BC058496 mRNA. Translation: AAH58496.1.
PIRiS14682. R3RT20.
RefSeqiNP_001007604.1. NM_001007603.2.
XP_002726693.1. XM_002726647.3.
XP_002727194.1. XM_002727148.4.
XP_002729204.1. XM_002729158.4.
XP_002729620.1. XM_002729574.4.
XP_002730040.1. XM_002729994.4.
XP_003753765.1. XM_003753717.3.
UniGeneiRn.103133.

3D structure databases

ProteinModelPortaliP60868.
SMRiP60868. Positions 17-117.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi250778. 3 interactions.
IntActiP60868. 2 interactions.
MINTiMINT-4133186.
STRINGi10116.ENSRNOP00000066077.

PTM databases

iPTMnetiP60868.
PhosphoSiteiP60868.

Proteomic databases

PaxDbiP60868.
PRIDEiP60868.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000040481; ENSRNOP00000066077; ENSRNOG00000030596.
ENSRNOT00000041813; ENSRNOP00000065886; ENSRNOG00000029627.
ENSRNOT00000051449; ENSRNOP00000069127; ENSRNOG00000030345.
GeneIDi100359951.
100362149.
100362684.
122772.
KEGGirno:100359951.
rno:100362149.
rno:100362684.
rno:122772.
UCSCiRGD:621037. rat.

Organism-specific databases

CTDi6224.
RGDi621037. Rps20.

Phylogenomic databases

eggNOGiKOG0900. Eukaryota.
COG0051. LUCA.
GeneTreeiENSGT00390000003248.
HOGENOMiHOG000270245.
HOVERGENiHBG004448.
InParanoidiP60868.
KOiK02969.
OMAiYELKIHK.
OrthoDBiEOG7KH9MQ.
PhylomeDBiP60868.
TreeFamiTF300222.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi620447.
PROiP60868.

Gene expression databases

GenevisibleiP60868. RN.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The primary structure of rat ribosomal protein S20."
    Chan Y.-L., Wool I.G.
    Biochim. Biophys. Acta 1049:93-95(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Sprague-Dawley.
    Tissue: Liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pituitary.

Entry informationi

Entry nameiRS20_RAT
AccessioniPrimary (citable) accession number: P60868
Secondary accession number(s): P17075
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: April 13, 2004
Last modified: May 11, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.