P60709 (ACTB_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 117.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Actin, cytoplasmic 1 Alternative name(s): Beta-actin Cleaved into the following chain: | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 375 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. |
| Subunit structure | Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others. Identified in a mRNP granule complex, at least composed of ACTB, ACTN4, DHX9, ERG, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPD, HNRNPL, HNRNPR, HNRNPU, HSPA1, HSPA8, IGF2BP1, ILF2, ILF3, NCBP1, NCL, PABPC1, PABPC4, PABPN1, RPLP0, RPS3, RPS3A, RPS4X, RPS8, RPS9, SYNCRIP, TROVE2, YBX1 and untranslated mRNAs. Component of the BAF complex, which includes at least actin (ACTB), ARID1A, ARID1B/BAF250, SMARCA2, SMARCA4/BRG1, ACTL6A/BAF53, ACTL6B/BAF53B, SMARCE1/BAF57 SMARCC1/BAF155, SMARCC2/BAF170, SMARCB1/SNF5/INI1, and one or more of SMARCD1/BAF60A, SMARCD2/BAF60B, or SMARCD3/BAF60C. In muscle cells, the BAF complex also contains DPF3. Found in a complex with XPO6, Ran, ACTB and PFN1. Component of the MLL5-L complex, at least composed of MLL5, STK38, PPP1CA, PPP1CB, PPP1CC, HCFC1, ACTB and OGT. Interacts with XPO6 and EMD. Interacts with ERBB2. Interacts with GCSAM. Ref.11 Ref.12 Ref.14 Ref.15 Ref.16 Ref.17 Ref.19 |
| Subcellular location | Cytoplasm › cytoskeleton. Note: Localized in cytoplasmic mRNP granules containing untranslated mRNAs. Ref.15 |
| Post-translational modification | ISGylated. Ref.13 Oxidation of Met-44 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. Methionine sulfoxide is produced stereospecifically, but it is not known whether the (S)-S-oxide or the (R)-S-oxide is produced By similarity. |
| Involvement in disease | Dystonia, juvenile-onset (DYTJ) [MIM:607371]: A form of dystonia with juvenile onset. Dystonia is defined by the presence of sustained involuntary muscle contraction, often leading to abnormal postures. Patients with juvenile-onset dystonia manifest progressive, generalized, dopa-unresponsive dystonia, developmental malformations and sensory hearing loss. Baraitser-Winter syndrome 1 (BRWS1) [MIM:243310]: A rare developmental disorder characterized by the combination of congenital ptosis, high-arched eyebrows, hypertelorism, ocular colobomata, and a brain malformation consisting of anterior-predominant lissencephaly. Other typical features include postnatal short stature and microcephaly, intellectual disability, seizures, and hearing loss. |
| Miscellaneous | In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility. |
| Sequence similarities | Belongs to the actin family. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| CFL2 | Q9Y281 | 2 | EBI-353944,EBI-351218 | |
| ERBB2 | P04626 | 10 | EBI-353944,EBI-641062 | |
| FBXO25 | Q8TCJ0-2 | 3 | EBI-353944,EBI-6264551 | |
| HSPA8 | P11142 | 2 | EBI-353944,EBI-351896 | |
| MYL12B | O14950 | 3 | EBI-353944,EBI-1642165 | |
| SMAD3 | P84022 | 3 | EBI-353944,EBI-347161 | |
| TAGLN2 | P37802 | 3 | EBI-353944,EBI-1056740 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 375 | 375 | Actin, cytoplasmic 1 | PRO_0000367073 | |||||
| Initiator methionine | 1 | 1 | Removed; alternate Ref.7 Ref.8 | ||||||
| Chain | 2 – 375 | 374 | Actin, cytoplasmic 1, N-terminally processed | PRO_0000000771 | |||||
Amino acid modifications | |||||||||
| Modified residue | 1 | 1 | N-acetylmethionine By similarity | ||||||
| Modified residue | 2 | 1 | N-acetylaspartate; in Actin, cytoplasmic 1, N-terminally processed Ref.8 | ||||||
| Modified residue | 44 | 1 | Methionine sulfoxide By similarity | ||||||
| Modified residue | 73 | 1 | Tele-methylhistidine By similarity | ||||||
Natural variations | |||||||||
| Natural variant | 12 | 1 | N → D in BRWS1. Ref.20 | VAR_067810 | |||||
| Natural variant | 65 | 1 | L → V in BRWS1. Ref.20 | VAR_067811 | |||||
| Natural variant | 183 | 1 | R → W in DYTJ; modifies cell response to latrunculin A. Ref.18 | VAR_030026 | |||||
| Natural variant | 196 | 1 | R → C in BRWS1. Ref.20 | VAR_067812 | |||||
| Natural variant | 196 | 1 | R → H in BRWS1. Ref.20 | VAR_067813 | |||||
| Natural variant | 243 | 1 | P → L. Corresponds to variant rs11546899 [ dbSNP | Ensembl ]. | VAR_048185 | |||||
Experimental info | |||||||||
| Sequence conflict | 97 | 1 | A → P in AAH16045. Ref.6 | ||||||
| Sequence conflict | 116 | 1 | R → L in AAH12854. Ref.6 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Evolutionary conservation in the untranslated regions of actin mRNAs: DNA sequence of a human beta-actin cDNA." Ponte P., Ng S.Y., Engel J., Gunning P., Kedes L. Nucleic Acids Res. 12:1687-1696(1984) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "Molecular structure of the human cytoplasmic beta-actin gene: interspecies homology of sequences in the introns." Nakajima-Iijima S., Hamada H., Reddy P., Kakunaga T. Proc. Natl. Acad. Sci. U.S.A. 82:6133-6137(1985) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [3] | "Direct proof that the primary site of action of cytochalasin on cell motility processes is actin." Ohmori H., Toyama S., Toyama S. J. Cell Biol. 116:933-941(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [4] | NIEHS SNPs program Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [5] | "The DNA sequence of human chromosome 7." Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. Wilson R.K.Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain, Eye, Kidney, Muscle, Pancreas, Placenta and Skin. |
| [7] | "Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides." Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J. Nat. Biotechnol. 21:566-569(2003) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-28. Tissue: Platelet. |
| [8] | Bienvenut W.V. Submitted (JUN-2005) to UniProtKB Cited for: PROTEIN SEQUENCE OF 2-18; 29-37; 40-50; 85-95; 148-177; 184-191; 197-206; 292-312 AND 316-326, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ASP-2, MASS SPECTROMETRY. Tissue: B-cell lymphoma. |
| [9] | Lubec G., Afjehi-Sadat L., Chen W.-Q., Sun Y. Submitted (DEC-2008) to UniProtKB Cited for: PROTEIN SEQUENCE OF 19-62; 85-113; 184-191; 197-206; 216-254; 291-312; 316-326 AND 360-372, MASS SPECTROMETRY. Tissue: Brain, Cajal-Retzius cell and Fetal brain cortex. |
| [10] | "Complementary DNA sequence of a human cytoplasmic actin. Interspecies divergence of 3' non-coding regions." Hanukoglu I., Tanese N., Fuchs E. J. Mol. Biol. 163:673-678(1983) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 252-375. |
| [11] | "Exportin 6: a novel nuclear export receptor that is specific for profilin.actin complexes." Stueven T., Hartmann E., Goerlich D. EMBO J. 22:5928-5940(2003) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN A COMPLEX WITH RAN; XPO6 AND PFN1, INTERACTION WITH XPO6. |
| [12] | "Emerin caps the pointed end of actin filaments: evidence for an actin cortical network at the nuclear inner membrane." Holaska J.M., Kowalski A.K., Wilson K.L. PLoS Biol. 2:1354-1362(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH EMD. |
| [13] | "Proteomic identification of proteins conjugated to ISG15 in mouse and human cells." Giannakopoulos N.V., Luo J.K., Papov V., Zou W., Lenschow D.J., Jacobs B.S., Borden E.C., Li J., Virgin H.W., Zhang D.E. Biochem. Biophys. Res. Commun. 336:496-506(2005) [PubMed] [Europe PMC] [Abstract] Cited for: ISGYLATION. |
| [14] | "HGAL, a lymphoma prognostic biomarker, interacts with the cytoskeleton and mediates the effects of IL-6 on cell migration." Lu X., Chen J., Malumbres R., Cubedo Gil E., Helfman D.M., Lossos I.S. Blood 110:4268-4277(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH GCSAM. |
| [15] | "Molecular composition of IMP1 ribonucleoprotein granules." Joeson L., Vikesaa J., Krogh A., Nielsen L.K., Hansen T., Borup R., Johnsen A.H., Christiansen J., Nielsen F.C. Mol. Cell. Proteomics 6:798-811(2007) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN A MRNP GRANULE COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION. |
| [16] | "Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex." Lange M., Kaynak B., Forster U.B., Toenjes M., Fischer J.J., Grimm C., Schlesinger J., Just S., Dunkel I., Krueger T., Mebus S., Lehrach H., Lurz R., Gobom J., Rottbauer W., Abdelilah-Seyfried S., Sperling S. Genes Dev. 22:2370-2384(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE BAF COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY. |
| [17] | "Nuclear ErbB2 enhances translation and cell growth by activating transcription of ribosomal RNA genes." Li L.Y., Chen H., Hsieh Y.H., Wang Y.N., Chu H.J., Chen Y.H., Chen H.Y., Chien P.J., Ma H.T., Tsai H.C., Lai C.C., Sher Y.P., Lien H.C., Tsai C.H., Hung M.C. Cancer Res. 71:4269-4279(2011) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ERBB2. |
| [18] | "A mutation of beta -actin that alters depolymerization dynamics is associated with autosomal dominant developmental malformations, deafness, and dystonia." Procaccio V., Salazar G., Ono S., Styers M.L., Gearing M., Davila A., Jimenez R., Juncos J., Gutekunst C.-A., Meroni G., Fontanella B., Sontag E., Sontag J.-M., Faundez V., Wainer B.H. Am. J. Hum. Genet. 78:947-960(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT DYTJ TRP-183, CHARACTERIZATION OF VARIANT DYTJ TRP-183. |
| [19] | "GlcNAcylation of a histone methyltransferase in retinoic-acid-induced granulopoiesis." Fujiki R., Chikanishi T., Hashiba W., Ito H., Takada I., Roeder R.G., Kitagawa H., Kato S. Nature 459:455-459(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE MLL5-L COMPLEX. |
| [20] | "De novo mutations in the actin genes ACTB and ACTG1 cause Baraitser-Winter syndrome." Riviere J.B., van Bon B.W., Hoischen A., Kholmanskikh S.S., O'Roak B.J., Gilissen C., Gijsen S., Sullivan C.T., Christian S.L., Abdul-Rahman O.A., Atkin J.F., Chassaing N., Drouin-Garraud V., Fry A.E., Fryns J.P., Gripp K.W., Kempers M., Kleefstra T. Dobyns W.B.Nat. Genet. 44:440-444(2012) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS BRWS1 ASP-12; VAL-65; CYS-196 AND HIS-196. |
| + | Additional computationally mapped references. |
Web resources
| Atlas of Genetics and Cytogenetics in Oncology and Haematology |
| NIEHS-SNPs |
| Mendelian genes actin, beta (ACTB) Leiden Open Variation Database (LOVD) |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X00351 mRNA. Translation: CAA25099.1. M10277 Genomic DNA. Translation: AAA51567.1. X63432 mRNA. Translation: CAA45026.1. AY582799 Genomic DNA. Translation: AAS79319.1. AC006483 Genomic DNA. Translation: AAP22343.1. BC001301 mRNA. Translation: AAH01301.1. BC002409 mRNA. Translation: AAH02409.1. BC004251 mRNA. Translation: AAH04251.1. BC008633 mRNA. Translation: AAH08633.1. BC012854 mRNA. Translation: AAH12854.1. BC013380 mRNA. Translation: AAH13380.1. BC014861 mRNA. Translation: AAH14861.1. BC016045 mRNA. Translation: AAH16045.1. V00478 mRNA. Translation: CAA23745.1. | ||||||||||||||||||||||||
| IPI | IPI00021439. | ||||||||||||||||||||||||
| PIR | ATHUB. A25168. | ||||||||||||||||||||||||
| RefSeq | NP_001092.1. NM_001101.3. | ||||||||||||||||||||||||
| UniGene | Hs.520640. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P60709. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| DIP | DIP-29686N. | ||||||||||||||||||||||||
| IntAct | P60709. 131 interactions. | ||||||||||||||||||||||||
| MINT | MINT-220312. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | P60709. | ||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||
| DMDM | 46397333. | ||||||||||||||||||||||||
2D gel databases | |||||||||||||||||||||||||
| DOSAC-COBS-2DPAGE | P60709. P60709_OR_P63261. | ||||||||||||||||||||||||
| REPRODUCTION-2DPAGE | P60709. | ||||||||||||||||||||||||
| SWISS-2DPAGE | P60709. | ||||||||||||||||||||||||
| UCD-2DPAGE | P60709. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PaxDb | P60709. | ||||||||||||||||||||||||
| PeptideAtlas | P60709. | ||||||||||||||||||||||||
| PRIDE | P60709. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| DNASU | 60. | ||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000331789; ENSP00000349960; ENSG00000075624. | ||||||||||||||||||||||||
| GeneID | 60. | ||||||||||||||||||||||||
| KEGG | hsa:60. | ||||||||||||||||||||||||
| UCSC | uc003soq.4. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 60. | ||||||||||||||||||||||||
| GeneCards | GC07M005566. | ||||||||||||||||||||||||
| HGNC | HGNC:132. ACTB. | ||||||||||||||||||||||||
| HPA | CAB002621. HPA041264. HPA041271. | ||||||||||||||||||||||||
| MIM | 102630. gene. 243310. phenotype. 607371. phenotype. | ||||||||||||||||||||||||
| neXtProt | NX_P60709. | ||||||||||||||||||||||||
| Orphanet | 79107. Developmental malformations - deafness - dystonia. 2995. Iris coloboma with ptosis - intellectual deficit. | ||||||||||||||||||||||||
| PharmGKB | PA24457. | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | COG5277. | ||||||||||||||||||||||||
| HOVERGEN | HBG003771. | ||||||||||||||||||||||||
| InParanoid | P60709. | ||||||||||||||||||||||||
| KO | K05692. | ||||||||||||||||||||||||
| OMA | IKNLMER. | ||||||||||||||||||||||||
| OrthoDB | EOG41JZC9. | ||||||||||||||||||||||||
| PhylomeDB | P60709. | ||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||
| Reactome | REACT_111045. Developmental Biology. REACT_111155. Cell-Cell communication. REACT_11123. Membrane Trafficking. REACT_17015. Metabolism of proteins. REACT_604. Hemostasis. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | P60709. | ||||||||||||||||||||||||
| Bgee | P60709. | ||||||||||||||||||||||||
| CleanEx | HS_ACTB. | ||||||||||||||||||||||||
| Genevestigator | P60709. | ||||||||||||||||||||||||
| GermOnline | ENSG00000075624. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR004000. Actin-related. IPR020902. Actin/actin-like_CS. IPR004001. Actin_CS. [Graphical view] | ||||||||||||||||||||||||
| PANTHER | PTHR11937. PTHR11937. 1 hit. | ||||||||||||||||||||||||
| Pfam | PF00022. Actin. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PRINTS | PR00190. ACTIN. | ||||||||||||||||||||||||
| SMART | SM00268. ACTIN. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PROSITE | PS00406. ACTINS_1. 1 hit. PS00432. ACTINS_2. 1 hit. PS01132. ACTINS_ACT_LIKE. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| ChiTaRS | ACTB. human. | ||||||||||||||||||||||||
| EvolutionaryTrace | P60709. | ||||||||||||||||||||||||
| GenomeRNAi | 60. | ||||||||||||||||||||||||
| NextBio | 253. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | ACTB_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P60709 Secondary accession number(s): P02570 Q96HG5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
