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Protein

UPF0299 membrane protein YohJ

Gene

yohJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12023-MONOMER.
ECOL316407:JW2129-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0299 membrane protein YohJ
Gene namesi
Name:yohJ
Ordered Locus Names:b2141, JW2129
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12023. yohJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 66PeriplasmicSequence analysis
Transmembranei7 – 2721HelicalSequence analysisAdd
BLAST
Topological domaini28 – 303CytoplasmicSequence analysis
Transmembranei31 – 5121HelicalSequence analysisAdd
BLAST
Topological domaini52 – 6211PeriplasmicSequence analysisAdd
BLAST
Transmembranei63 – 8321HelicalSequence analysisAdd
BLAST
Topological domaini84 – 929CytoplasmicSequence analysis
Transmembranei93 – 11321HelicalSequence analysisAdd
BLAST
Topological domaini114 – 13219PeriplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 132132UPF0299 membrane protein YohJPRO_0000072806Add
BLAST

Proteomic databases

PaxDbiP60632.

Interactioni

Protein-protein interaction databases

BioGridi4262175. 7 interactions.
IntActiP60632. 1 interaction.
STRINGi511145.b2141.

Structurei

3D structure databases

ProteinModelPortaliP60632.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0299 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105VAW. Bacteria.
COG1380. LUCA.
HOGENOMiHOG000253615.
InParanoidiP60632.
KOiK06518.
OMAiGIPSSIW.
PhylomeDBiP60632.

Family and domain databases

HAMAPiMF_01144. UPF0299. 1 hit.
InterProiIPR005538. LrgA/CidA.
IPR022957. Uncharacterised_UPF0299.
[Graphical view]
PfamiPF03788. LrgA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60632-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTLNIIWQ YLRAFVLIYA CLYAGIFIAS LLPVTIPGSI IGMLILFVLL
60 70 80 90 100
ALQILPAKWV NPGCYVLIRY MALLFVPIGV GVMQYFDLLR AQFGPVVVSC
110 120 130
AVSTLVVFLV VSWSSQLVHG ERKVVGQKGS EE
Length:132
Mass (Da):14,579
Last modified:March 29, 2004 - v2
Checksum:i263DA3254DEF81A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60504.1.
U00096 Genomic DNA. Translation: AAC75202.1.
AP009048 Genomic DNA. Translation: BAE76618.1.
PIRiD64982.
RefSeqiNP_416646.1. NC_000913.3.
WP_001295452.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75202; AAC75202; b2141.
BAE76618; BAE76618; BAE76618.
GeneIDi949127.
KEGGiecj:JW2129.
eco:b2141.
PATRICi32119625. VBIEscCol129921_2223.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60504.1.
U00096 Genomic DNA. Translation: AAC75202.1.
AP009048 Genomic DNA. Translation: BAE76618.1.
PIRiD64982.
RefSeqiNP_416646.1. NC_000913.3.
WP_001295452.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP60632.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262175. 7 interactions.
IntActiP60632. 1 interaction.
STRINGi511145.b2141.

Proteomic databases

PaxDbiP60632.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75202; AAC75202; b2141.
BAE76618; BAE76618; BAE76618.
GeneIDi949127.
KEGGiecj:JW2129.
eco:b2141.
PATRICi32119625. VBIEscCol129921_2223.

Organism-specific databases

EchoBASEiEB1958.
EcoGeneiEG12023. yohJ.

Phylogenomic databases

eggNOGiENOG4105VAW. Bacteria.
COG1380. LUCA.
HOGENOMiHOG000253615.
InParanoidiP60632.
KOiK06518.
OMAiGIPSSIW.
PhylomeDBiP60632.

Enzyme and pathway databases

BioCyciEcoCyc:EG12023-MONOMER.
ECOL316407:JW2129-MONOMER.

Miscellaneous databases

PROiP60632.

Family and domain databases

HAMAPiMF_01144. UPF0299. 1 hit.
InterProiIPR005538. LrgA/CidA.
IPR022957. Uncharacterised_UPF0299.
[Graphical view]
PfamiPF03788. LrgA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOHJ_ECOLI
AccessioniPrimary (citable) accession number: P60632
Secondary accession number(s): P33372, Q2MAT8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: March 29, 2004
Last modified: September 7, 2016
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.