Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P60617

- RL10E_HALMA

UniProt

P60617 - RL10E_HALMA

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

50S ribosomal protein L10e

Gene

rpl10e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

This is 1 of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains. Modeling places the A and P site tRNAs in close proximity to this protein.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-2126-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10eUniRule annotation
Gene namesi
Name:rpl10eUniRule annotation
Ordered Locus Names:rrnAC2357
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
ProteomesiUP000001169: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17717750S ribosomal protein L10ePRO_0000147132Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Weakly binds 5S rRNA. Probably binds the A and P site tRNAs.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC2357.

Structurei

Secondary structure

1
177
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 83Combined sources
Turni20 – 223Combined sources
Beta strandi34 – 374Combined sources
Beta strandi40 – 423Combined sources
Helixi43 – 453Combined sources
Beta strandi47 – 5610Combined sources
Beta strandi58 – 614Combined sources
Helixi62 – 8019Combined sources
Turni81 – 833Combined sources
Beta strandi87 – 904Combined sources
Beta strandi96 – 1005Combined sources
Beta strandi116 – 1183Combined sources
Beta strandi122 – 1309Combined sources
Beta strandi135 – 1417Combined sources
Turni143 – 1453Combined sources
Helixi146 – 15611Combined sources
Helixi157 – 1593Combined sources
Beta strandi160 – 1623Combined sources
Beta strandi164 – 1663Combined sources
Turni172 – 1743Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40F14-129[»]
1JJ2X-ray2.40H14-130[»]
1K73X-ray3.01J14-130[»]
1K8AX-ray3.00J14-130[»]
1K9MX-ray3.00J14-130[»]
1KC8X-ray3.01J14-130[»]
1KD1X-ray3.00J14-130[»]
1KQSX-ray3.10H14-130[»]
1M1KX-ray3.20J14-130[»]
1M90X-ray2.80J14-130[»]
1N8RX-ray3.00J14-130[»]
1NJIX-ray3.00J14-130[»]
1Q7YX-ray3.20J14-130[»]
1Q81X-ray2.95J14-130[»]
1Q82X-ray2.98J14-130[»]
1Q86X-ray3.00J14-130[»]
1QVFX-ray3.10H14-130[»]
1QVGX-ray2.90H14-130[»]
1S72X-ray2.40H4-166[»]
1VQ4X-ray2.70H4-166[»]
1VQ5X-ray2.60H4-166[»]
1VQ6X-ray2.70H4-166[»]
1VQ7X-ray2.50H4-166[»]
1VQ8X-ray2.20H4-166[»]
1VQ9X-ray2.40H4-166[»]
1VQKX-ray2.30H4-166[»]
1VQLX-ray2.30H4-166[»]
1VQMX-ray2.30H4-166[»]
1VQNX-ray2.40H4-166[»]
1VQOX-ray2.20H4-166[»]
1VQPX-ray2.25H4-166[»]
1W2BX-ray3.50H14-130[»]
1YHQX-ray2.40H1-177[»]
1YI2X-ray2.65H1-177[»]
1YIJX-ray2.60H1-177[»]
1YITX-ray2.80H1-177[»]
1YJ9X-ray2.90H1-177[»]
1YJNX-ray3.00H1-177[»]
1YJWX-ray2.90H1-177[»]
2OTJX-ray2.90H4-166[»]
2OTLX-ray2.70H4-166[»]
2QA4X-ray3.00H4-177[»]
2QEXX-ray2.90H1-177[»]
3CC2X-ray2.40H1-177[»]
3CC4X-ray2.70H1-177[»]
3CC7X-ray2.70H1-177[»]
3CCEX-ray2.75H1-177[»]
3CCJX-ray2.70H1-177[»]
3CCLX-ray2.90H1-177[»]
3CCMX-ray2.55H1-177[»]
3CCQX-ray2.90H1-177[»]
3CCRX-ray3.00H1-177[»]
3CCSX-ray2.95H1-177[»]
3CCUX-ray2.80H1-177[»]
3CCVX-ray2.90H1-177[»]
3CD6X-ray2.75H1-177[»]
3CMAX-ray2.80H1-177[»]
3CMEX-ray2.95H1-177[»]
3CPWX-ray2.70H1-177[»]
3G4SX-ray3.20H1-177[»]
3G6EX-ray2.70H1-177[»]
3G71X-ray2.85H1-177[»]
3I55X-ray3.11H1-166[»]
3I56X-ray2.90H1-166[»]
4ADXelectron microscopy6.60H1-177[»]
4HUBX-ray2.40H1-177[»]
ProteinModelPortaliP60617.
SMRiP60617. Positions 4-174.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60617.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10e family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0197.
HOGENOMiHOG000223755.
KOiK02866.
OMAiNAGENNY.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_00448. Ribosomal_L10e.
InterProiIPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR022981. Ribosomal_L10e_arc.
IPR018255. Ribosomal_L10e_CS.
[Graphical view]
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
PROSITEiPS01257. RIBOSOMAL_L10E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60617-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSDKPASMYR DIDKPAYTRR EYITGIPGSK IAQHKMGRKQ KDADDYPVQI
60 70 80 90 100
SLIVEETVQL RHGSLEASRL SANRHLIKEL GEEGDYKMTL RKFPHQVLRE
110 120 130 140 150
NKQATGAGAD RVSDGMRAAF GKIVGTAARV QAGEQLFTAY CNVEDAEHVK
160 170
EAFRRAYNKI TPSCRIKVER GEELLIA
Length:177
Mass (Da):19,908
Last modified:January 4, 2005 - v2
Checksum:iE7A72FE3683D2BDB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV47175.1.
RefSeqiYP_136882.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV47175; AAV47175; rrnAC2357.
GeneIDi3130436.
KEGGihma:rrnAC2357.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV47175.1 .
RefSeqi YP_136882.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1FFK X-ray 2.40 F 14-129 [» ]
1JJ2 X-ray 2.40 H 14-130 [» ]
1K73 X-ray 3.01 J 14-130 [» ]
1K8A X-ray 3.00 J 14-130 [» ]
1K9M X-ray 3.00 J 14-130 [» ]
1KC8 X-ray 3.01 J 14-130 [» ]
1KD1 X-ray 3.00 J 14-130 [» ]
1KQS X-ray 3.10 H 14-130 [» ]
1M1K X-ray 3.20 J 14-130 [» ]
1M90 X-ray 2.80 J 14-130 [» ]
1N8R X-ray 3.00 J 14-130 [» ]
1NJI X-ray 3.00 J 14-130 [» ]
1Q7Y X-ray 3.20 J 14-130 [» ]
1Q81 X-ray 2.95 J 14-130 [» ]
1Q82 X-ray 2.98 J 14-130 [» ]
1Q86 X-ray 3.00 J 14-130 [» ]
1QVF X-ray 3.10 H 14-130 [» ]
1QVG X-ray 2.90 H 14-130 [» ]
1S72 X-ray 2.40 H 4-166 [» ]
1VQ4 X-ray 2.70 H 4-166 [» ]
1VQ5 X-ray 2.60 H 4-166 [» ]
1VQ6 X-ray 2.70 H 4-166 [» ]
1VQ7 X-ray 2.50 H 4-166 [» ]
1VQ8 X-ray 2.20 H 4-166 [» ]
1VQ9 X-ray 2.40 H 4-166 [» ]
1VQK X-ray 2.30 H 4-166 [» ]
1VQL X-ray 2.30 H 4-166 [» ]
1VQM X-ray 2.30 H 4-166 [» ]
1VQN X-ray 2.40 H 4-166 [» ]
1VQO X-ray 2.20 H 4-166 [» ]
1VQP X-ray 2.25 H 4-166 [» ]
1W2B X-ray 3.50 H 14-130 [» ]
1YHQ X-ray 2.40 H 1-177 [» ]
1YI2 X-ray 2.65 H 1-177 [» ]
1YIJ X-ray 2.60 H 1-177 [» ]
1YIT X-ray 2.80 H 1-177 [» ]
1YJ9 X-ray 2.90 H 1-177 [» ]
1YJN X-ray 3.00 H 1-177 [» ]
1YJW X-ray 2.90 H 1-177 [» ]
2OTJ X-ray 2.90 H 4-166 [» ]
2OTL X-ray 2.70 H 4-166 [» ]
2QA4 X-ray 3.00 H 4-177 [» ]
2QEX X-ray 2.90 H 1-177 [» ]
3CC2 X-ray 2.40 H 1-177 [» ]
3CC4 X-ray 2.70 H 1-177 [» ]
3CC7 X-ray 2.70 H 1-177 [» ]
3CCE X-ray 2.75 H 1-177 [» ]
3CCJ X-ray 2.70 H 1-177 [» ]
3CCL X-ray 2.90 H 1-177 [» ]
3CCM X-ray 2.55 H 1-177 [» ]
3CCQ X-ray 2.90 H 1-177 [» ]
3CCR X-ray 3.00 H 1-177 [» ]
3CCS X-ray 2.95 H 1-177 [» ]
3CCU X-ray 2.80 H 1-177 [» ]
3CCV X-ray 2.90 H 1-177 [» ]
3CD6 X-ray 2.75 H 1-177 [» ]
3CMA X-ray 2.80 H 1-177 [» ]
3CME X-ray 2.95 H 1-177 [» ]
3CPW X-ray 2.70 H 1-177 [» ]
3G4S X-ray 3.20 H 1-177 [» ]
3G6E X-ray 2.70 H 1-177 [» ]
3G71 X-ray 2.85 H 1-177 [» ]
3I55 X-ray 3.11 H 1-166 [» ]
3I56 X-ray 2.90 H 1-166 [» ]
4ADX electron microscopy 6.60 H 1-177 [» ]
4HUB X-ray 2.40 H 1-177 [» ]
ProteinModelPortali P60617.
SMRi P60617. Positions 4-174.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272569.rrnAC2357.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAV47175 ; AAV47175 ; rrnAC2357 .
GeneIDi 3130436.
KEGGi hma:rrnAC2357.

Phylogenomic databases

eggNOGi COG0197.
HOGENOMi HOG000223755.
KOi K02866.
OMAi NAGENNY.

Enzyme and pathway databases

BioCyci HMAR272569:GJDH-2126-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60617.

Family and domain databases

Gene3Di 3.90.1170.10. 1 hit.
HAMAPi MF_00448. Ribosomal_L10e.
InterProi IPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR022981. Ribosomal_L10e_arc.
IPR018255. Ribosomal_L10e_CS.
[Graphical view ]
Pfami PF00252. Ribosomal_L16. 1 hit.
[Graphical view ]
PIRSFi PIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMi SSF54686. SSF54686. 1 hit.
PROSITEi PS01257. RIBOSOMAL_L10E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  2. "The complete atomic structure of the large ribosomal subunit at 2.4 A resolution."
    Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A.
    Science 289:905-920(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  3. "The structural basis of ribosome activity in peptide bond synthesis."
    Nissen P., Hansen J., Ban N., Moore P.B., Steitz T.A.
    Science 289:920-930(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  4. "A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits."
    Schmeing T.M., Seila A.C., Hansen J.L., Freeborn B., Soukup J.K., Scaringe S.A., Strobel S.A., Moore P.B., Steitz T.A.
    Nat. Struct. Biol. 9:225-230(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS) OF THE 50S SUBUNIT.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  5. "The kink-turn: a new RNA secondary structure motif."
    Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A.
    EMBO J. 20:4214-4221(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  6. "The structures of four macrolide antibiotics bound to the large ribosomal subunit."
    Hansen J.L., Ippolito J.A., Ban N., Nissen P., Moore P.B., Steitz T.A.
    Mol. Cell 10:117-128(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FOUR MACROLIDE ANTIBIOTICS.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  7. Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE 50S SUBUNIT.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  8. "Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit."
    Hansen J.L., Moore P.B., Steitz T.A.
    J. Mol. Biol. 330:1061-1075(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FIVE ANTIBIOTICS AT THE PEPTIDYL TRANSFERASE CENTER.
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  9. "Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit."
    Schmeing T.M., Moore P.B., Steitz T.A.
    RNA 9:1345-1352(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF THE 50S SUBUNIT WITH TWO DIFFERENT E SITE SUBSTRATES.
  10. "Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
    Gabdulkhakov A., Nikonov S., Garber M.
    Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.

Entry informationi

Entry nameiRL10E_HALMA
AccessioniPrimary (citable) accession number: P60617
Secondary accession number(s): Q5UZX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: January 4, 2005
Last modified: October 29, 2014
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3