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Protein

Gamma-aminobutyric acid receptor-associated protein

Gene

Gabarap

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Involved in apoptosis (By similarity). May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in autophagy (By similarity).By similarity1 Publication

GO - Molecular functioni

  • GABA receptor binding Source: RGD

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Apoptosis, Autophagy, Protein transport, Transport

Enzyme and pathway databases

ReactomeiR-RNO-1632852. Macroautophagy.

Names & Taxonomyi

Protein namesi
Recommended name:
Gamma-aminobutyric acid receptor-associated protein
Alternative name(s):
GABA(A) receptor-associated protein
Gene namesi
Name:Gabarap
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi61911. Gabarap.

Subcellular locationi

  • Endomembrane system 1 Publication
  • Cytoplasmcytoskeleton 1 Publication
  • Golgi apparatus membrane 1 Publication
  • Cytoplasmic vesicleautophagosome By similarity
  • Cytoplasmic vesicle 1 Publication

  • Note: Largely associated with intracellular membrane structures including the Golgi apparatus and postsynaptic cisternae (PubMed:11461150). Colocalizes with microtubules (PubMed:10899939). Localizes also to discrete punctae along the ciliary axoneme (By similarity).By similarity2 Publications

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Cytoskeleton, Golgi apparatus, Membrane, Microtubule

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002123661 – 116Gamma-aminobutyric acid receptor-associated proteinAdd BLAST116
PropeptideiPRO_0000423068117Removed in mature formBy similarity1

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi116Phosphatidylethanolamine amidated glycineBy similarity1

Post-translational modificationi

The precursor molecule is cleaved by ATG4B to form the cytosolic form, GABARAP-I. This is activated by APG7L/ATG7, transferred to ATG3 and conjugated to phospholipid to form the membrane-bound form, GABARAP-II (By similarity).By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei116 – 117Cleavage; by ATG4By similarity2

Keywords - PTMi

Lipoprotein

Proteomic databases

PaxDbiP60517.
PRIDEiP60517.

PTM databases

iPTMnetiP60517.
PhosphoSitePlusiP60517.

Expressioni

Tissue specificityi

Expressed in brain (at protein level) (PubMed:25172774). Can be found in both somatodendritic and axonal compartment of neurons (PubMed:11461150).2 Publications

Gene expression databases

BgeeiENSRNOG00000017417.
GenevisibleiP60517. RN.

Interactioni

Subunit structurei

Interacts with ATG3, ATG7, CALR, DDX47, GABRG2, TUBA1 and ULK1 (By similarity). Interacts with beta-tubulin, GPHN and NSF (PubMed:10899939, PubMed:11461150, PubMed:10900017). Interacts with TP53INP1 and TP53INP2 (By similarity). Interacts with TBC1D25 (By similarity). Directly interacts with SQSTM1 (By similarity). Interacts with MAPK15 (By similarity). Interacts with TECPR2 (By similarity). Interacts with TBC1D5 (By similarity). Interacts with TRIM5 (By similarity). Interacts with MEFV and TRIM21 (By similarity). Interacts with KIF21B (PubMed:25172774).By similarity4 Publications

GO - Molecular functioni

  • GABA receptor binding Source: RGD

Protein-protein interaction databases

BioGridi248705. 5 interactors.
IntActiP60517. 1 interactor.
STRINGi10116.ENSRNOP00000023724.

Structurei

Secondary structure

1117
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 8Combined sources5
Helixi11 – 24Combined sources14
Beta strandi28 – 35Combined sources8
Beta strandi48 – 52Combined sources5
Helixi57 – 68Combined sources12
Beta strandi77 – 82Combined sources6
Helixi91 – 98Combined sources8
Beta strandi105 – 112Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KJTX-ray2.00A1-117[»]
ProteinModelPortaliP60517.
SMRiP60517.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60517.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 22Interaction with beta-tubulinAdd BLAST22
Regioni36 – 117Interaction with GPHN1 PublicationAdd BLAST82
Regioni36 – 68Interaction with GABRG2Sequence analysisAdd BLAST33

Sequence similaritiesi

Belongs to the ATG8 family.Curated

Phylogenomic databases

eggNOGiKOG1654. Eukaryota.
ENOG4111JAT. LUCA.
GeneTreeiENSGT00390000012937.
HOGENOMiHOG000232034.
HOVERGENiHBG051706.
InParanoidiP60517.
KOiK08341.
OMAiTTMGQLY.
OrthoDBiEOG091G10QX.
PhylomeDBiP60517.
TreeFamiTF314556.

Family and domain databases

CDDicd01611. GABARAP. 1 hit.
InterProiIPR004241. Atg8-like.
IPR029071. Ubiquitin-rel_dom.
[Graphical view]
PANTHERiPTHR10969. PTHR10969. 1 hit.
PfamiPF02991. Atg8. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60517-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFVYKEEHP FEKRRSEGEK IRKKYPDRVP VIVEKAPKAR IGDLDKKKYL
60 70 80 90 100
VPSDLTVGQF YFLIRKRIHL RAEDALFFFV NNVIPPTSAT MGQLYQEHHE
110
EDFFLYIAYS DESVYGL
Length:117
Mass (Da):13,918
Last modified:March 1, 2004 - v1
Checksum:iBC0B84B8A51C1E32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF161588 mRNA. Translation: AAD47643.1.
BC058441 mRNA. Translation: AAH58441.1.
RefSeqiNP_742033.1. NM_172036.3.
UniGeneiRn.8411.

Genome annotation databases

EnsembliENSRNOT00000023724; ENSRNOP00000023724; ENSRNOG00000017417.
GeneIDi58974.
KEGGirno:58974.
UCSCiRGD:61911. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF161588 mRNA. Translation: AAD47643.1.
BC058441 mRNA. Translation: AAH58441.1.
RefSeqiNP_742033.1. NM_172036.3.
UniGeneiRn.8411.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KJTX-ray2.00A1-117[»]
ProteinModelPortaliP60517.
SMRiP60517.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi248705. 5 interactors.
IntActiP60517. 1 interactor.
STRINGi10116.ENSRNOP00000023724.

PTM databases

iPTMnetiP60517.
PhosphoSitePlusiP60517.

Proteomic databases

PaxDbiP60517.
PRIDEiP60517.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000023724; ENSRNOP00000023724; ENSRNOG00000017417.
GeneIDi58974.
KEGGirno:58974.
UCSCiRGD:61911. rat.

Organism-specific databases

CTDi11337.
RGDi61911. Gabarap.

Phylogenomic databases

eggNOGiKOG1654. Eukaryota.
ENOG4111JAT. LUCA.
GeneTreeiENSGT00390000012937.
HOGENOMiHOG000232034.
HOVERGENiHBG051706.
InParanoidiP60517.
KOiK08341.
OMAiTTMGQLY.
OrthoDBiEOG091G10QX.
PhylomeDBiP60517.
TreeFamiTF314556.

Enzyme and pathway databases

ReactomeiR-RNO-1632852. Macroautophagy.

Miscellaneous databases

EvolutionaryTraceiP60517.
PROiP60517.

Gene expression databases

BgeeiENSRNOG00000017417.
GenevisibleiP60517. RN.

Family and domain databases

CDDicd01611. GABARAP. 1 hit.
InterProiIPR004241. Atg8-like.
IPR029071. Ubiquitin-rel_dom.
[Graphical view]
PANTHERiPTHR10969. PTHR10969. 1 hit.
PfamiPF02991. Atg8. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiGBRAP_RAT
AccessioniPrimary (citable) accession number: P60517
Secondary accession number(s): Q9QUI7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 1, 2004
Last modified: November 30, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.