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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28
Gene namesi
Name:rpmB
Ordered Locus Names:TTHA0042
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001785772 – 9850S ribosomal protein L28Add BLAST97

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0042.

Structurei

Secondary structure

198
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni6 – 8Combined sources3
Beta strandi13 – 23Combined sources11
Turni25 – 28Combined sources4
Beta strandi29 – 42Combined sources14
Beta strandi46 – 50Combined sources5
Beta strandi53 – 56Combined sources4
Beta strandi59 – 63Combined sources5
Helixi64 – 66Combined sources3
Helixi67 – 75Combined sources9
Beta strandi78 – 80Combined sources3
Helixi87 – 92Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R1/Y11-98[»]
1VY4X-ray2.60B1/D11-98[»]
1VY5X-ray2.55B1/D11-98[»]
1VY6X-ray2.90B1/D11-98[»]
1VY7X-ray2.80B1/D11-98[»]
4L47X-ray3.22R1/Y11-98[»]
4L71X-ray3.90R1/Y11-98[»]
4LELX-ray3.90R1/Y11-98[»]
4LFZX-ray3.92R1/Y11-98[»]
4LNTX-ray2.94R1/Y11-98[»]
4LSKX-ray3.48R1/Y11-98[»]
4LT8X-ray3.14R1/Y11-98[»]
4P6FX-ray3.60R1/Y11-98[»]
4P70X-ray3.68R1/Y11-98[»]
4TUAX-ray3.60R1/Y11-98[»]
4TUBX-ray3.60R1/Y11-98[»]
4TUCX-ray3.60R1/Y11-98[»]
4TUDX-ray3.60R1/Y11-98[»]
4TUEX-ray3.50R1/Y11-98[»]
4V51X-ray2.80B1/D12-98[»]
4V5AX-ray3.50B1/D12-98[»]
4V5CX-ray3.30B1/D11-98[»]
4V5DX-ray3.50B1/D11-98[»]
4V5EX-ray3.45B1/D11-98[»]
4V5FX-ray3.60B1/D11-98[»]
4V5GX-ray3.60B1/D11-98[»]
4V5JX-ray3.10B1/D11-98[»]
4V5KX-ray3.20B1/D11-98[»]
4V5LX-ray3.10B11-98[»]
4V5Melectron microscopy7.80B11-98[»]
4V5Nelectron microscopy7.60B11-98[»]
4V5PX-ray3.10B1/D11-98[»]
4V5QX-ray3.10B1/D11-98[»]
4V5RX-ray3.10B1/D11-98[»]
4V5SX-ray3.10B1/D11-98[»]
4V68electron microscopy6.40B18-96[»]
4V6AX-ray3.10B1/D11-98[»]
4V6FX-ray3.10AZ/DZ1-98[»]
4V6GX-ray3.50BZ/DZ1-98[»]
4V7JX-ray3.30A1/B11-98[»]
4V7KX-ray3.60A1/B11-98[»]
4V7LX-ray3.00B1/D11-98[»]
4V7MX-ray3.45B1/D11-98[»]
4V7WX-ray3.00B1/D11-98[»]
4V7XX-ray3.00B1/D11-98[»]
4V7YX-ray3.00B1/D11-98[»]
4V7ZX-ray3.10B1/D11-98[»]
4V87X-ray3.10AZ/DZ2-98[»]
4V8AX-ray3.20A1/B11-98[»]
4V8BX-ray3.00BZ/DZ1-98[»]
4V8CX-ray3.30AZ/BZ1-98[»]
4V8DX-ray3.00BZ/DZ1-98[»]
4V8EX-ray3.30AZ/CZ1-98[»]
4V8FX-ray3.30AZ/DZ1-98[»]
4V8GX-ray3.00B1/D11-98[»]
4V8HX-ray3.10B1/D11-98[»]
4V8IX-ray2.70B1/D11-98[»]
4V8JX-ray3.90B1/D11-98[»]
4V8NX-ray3.10B1/D11-98[»]
4V8OX-ray3.80B11-98[»]
4V8QX-ray3.10A11-98[»]
4V8UX-ray3.70B1/D11-98[»]
4V8XX-ray3.35B1/D11-98[»]
4V90X-ray2.95B12-98[»]
4V95X-ray3.20B1/D11-98[»]
4V97X-ray3.52B1/D11-98[»]
4V9AX-ray3.30BZ/DZ1-98[»]
4V9BX-ray3.10BZ/DZ1-98[»]
4V9HX-ray2.86B11-98[»]
4V9IX-ray3.30B1/D13-95[»]
4V9RX-ray3.00B1/D11-98[»]
4V9SX-ray3.10B1/D11-98[»]
4W2EX-ray2.9011-98[»]
4W2FX-ray2.40B1/D11-98[»]
4W2GX-ray2.55B1/D11-98[»]
4W2HX-ray2.70B1/D11-98[»]
4W2IX-ray2.70B1/D11-98[»]
4W4GX-ray3.30R1/Y11-98[»]
4WPOX-ray2.80A1/C11-98[»]
4WQ1X-ray3.10F5/J81-98[»]
4WQFX-ray2.80A1/C11-98[»]
4WQRX-ray3.15F5/J81-98[»]
4WQUX-ray2.80A1/C11-98[»]
4WQYX-ray2.80A1/C11-98[»]
4WR6X-ray3.05F5/J81-98[»]
4WRAX-ray3.05F5/J81-98[»]
4WROX-ray3.05J81-98[»]
4WSDX-ray2.95F5/J81-98[»]
4WSMX-ray3.30F5/J81-98[»]
4WT1X-ray3.05F5/J81-98[»]
4WT8X-ray3.40CH/DH3-95[»]
4WU1X-ray3.20F5/J81-98[»]
4WZDX-ray3.10F5/J81-98[»]
4WZOX-ray3.30F5/J81-98[»]
4Y4OX-ray2.3011/211-98[»]
4Y4PX-ray2.5011/211-98[»]
4YPBX-ray3.40R1/Y11-98[»]
4YZVX-ray3.10R1/Y11-98[»]
4Z3SX-ray2.6511/211-98[»]
4Z8CX-ray2.9011/211-98[»]
4ZERX-ray3.1011/212-98[»]
4ZSNX-ray3.60R1/Y11-98[»]
5CZPX-ray3.30R1/Y11-98[»]
5D8BX-ray3.63RB/V1-98[»]
5DFEX-ray3.10R1/Y11-98[»]
5DOXX-ray3.1011/211-98[»]
5DOYX-ray2.6011/211-98[»]
5E7KX-ray3.20F5/J81-98[»]
5E81X-ray2.95F5/J81-98[»]
5EL4X-ray3.15F5/J81-98[»]
5EL5X-ray3.15F5/J81-98[»]
5EL6X-ray3.10F5/J81-98[»]
5EL7X-ray3.15F5/J81-98[»]
5F8KX-ray2.8011/212-98[»]
5FDUX-ray2.9011/212-98[»]
5FDVX-ray2.8011/212-98[»]
5HAUX-ray3.001Z/2Z1-98[»]
5HCPX-ray2.8911/211-98[»]
5HCQX-ray2.8011/211-98[»]
5HCRX-ray2.8011/211-98[»]
5HD1X-ray2.7011/211-98[»]
5IB7X-ray2.99F5/J81-98[»]
5IB8X-ray3.13F5/J81-98[»]
5IBBX-ray2.96F5/J81-98[»]
5J30X-ray3.20R1/Y11-98[»]
5J3CX-ray3.04R1/Y11-98[»]
5J4BX-ray2.6011/211-98[»]
5J4CX-ray2.8011/211-98[»]
5J8BX-ray2.6011-98[»]
ProteinModelPortaliP60494.
SMRiP60494.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60494.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
HOGENOMiHOG000040463.
KOiK02902.
OMAiMAKVCEV.

Family and domain databases

Gene3Di2.30.170.40. 1 hit.
HAMAPiMF_00373. Ribosomal_L28. 1 hit.
InterProiView protein in InterPro
IPR034704. L28p-like.
IPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
PfamiView protein in Pfam
PF00830. Ribosomal_L28. 1 hit.
SUPFAMiSSF143800. SSF143800. 1 hit.
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60494-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL
Length:98
Mass (Da):10,978
Last modified:January 23, 2007 - v3
Checksum:i0FC1FAC11DB6C379
GO

Mass spectrometryi

Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD69865.1.
RefSeqiWP_008631133.1. NC_006461.1.
YP_143308.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD69865; BAD69865; BAD69865.
GeneIDi3168111.
KEGGittj:TTHA0042.
PATRICifig|300852.9.peg.40.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL28_THET8
AccessioniPrimary (citable) accession number: P60494
Secondary accession number(s): Q5SMA1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 108 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families