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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28
Gene namesi
Name:rpmB
Ordered Locus Names:TTHA0042
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001785772 – 9850S ribosomal protein L28Add BLAST97

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0042.

Structurei

Secondary structure

198
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni6 – 8Combined sources3
Beta strandi13 – 23Combined sources11
Turni25 – 28Combined sources4
Beta strandi29 – 42Combined sources14
Beta strandi46 – 50Combined sources5
Beta strandi53 – 56Combined sources4
Beta strandi59 – 63Combined sources5
Helixi64 – 66Combined sources3
Helixi67 – 75Combined sources9
Beta strandi78 – 80Combined sources3
Helixi87 – 92Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R1/Y11-98[»]
1VY4X-ray2.60B1/D11-98[»]
1VY5X-ray2.55B1/D11-98[»]
1VY6X-ray2.90B1/D11-98[»]
1VY7X-ray2.80B1/D11-98[»]
4L47X-ray3.22R1/Y11-98[»]
4L71X-ray3.90R1/Y11-98[»]
4LELX-ray3.90R1/Y11-98[»]
4LFZX-ray3.92R1/Y11-98[»]
4LNTX-ray2.94R1/Y11-98[»]
4LSKX-ray3.48R1/Y11-98[»]
4LT8X-ray3.14R1/Y11-98[»]
4P6FX-ray3.60R1/Y11-98[»]
4P70X-ray3.68R1/Y11-98[»]
4TUAX-ray3.60R1/Y11-98[»]
4TUBX-ray3.60R1/Y11-98[»]
4TUCX-ray3.60R1/Y11-98[»]
4TUDX-ray3.60R1/Y11-98[»]
4TUEX-ray3.50R1/Y11-98[»]
4V51X-ray2.80B1/D12-98[»]
4V5AX-ray3.50B1/D12-98[»]
4V5CX-ray3.30B1/D11-98[»]
4V5DX-ray3.50B1/D11-98[»]
4V5EX-ray3.45B1/D11-98[»]
4V5FX-ray3.60B1/D11-98[»]
4V5GX-ray3.60B1/D11-98[»]
4V5JX-ray3.10B1/D11-98[»]
4V5KX-ray3.20B1/D11-98[»]
4V5LX-ray3.10B11-98[»]
4V5Melectron microscopy7.80B11-98[»]
4V5Nelectron microscopy7.60B11-98[»]
4V5PX-ray3.10B1/D11-98[»]
4V5QX-ray3.10B1/D11-98[»]
4V5RX-ray3.10B1/D11-98[»]
4V5SX-ray3.10B1/D11-98[»]
4V68electron microscopy6.40B18-96[»]
4V6AX-ray3.10B1/D11-98[»]
4V6FX-ray3.10AZ/DZ1-98[»]
4V6GX-ray3.50BZ/DZ1-98[»]
4V7JX-ray3.30A1/B11-98[»]
4V7KX-ray3.60A1/B11-98[»]
4V7LX-ray3.00B1/D11-98[»]
4V7MX-ray3.45B1/D11-98[»]
4V7WX-ray3.00B1/D11-98[»]
4V7XX-ray3.00B1/D11-98[»]
4V7YX-ray3.00B1/D11-98[»]
4V7ZX-ray3.10B1/D11-98[»]
4V87X-ray3.10AZ/DZ2-98[»]
4V8AX-ray3.20A1/B11-98[»]
4V8BX-ray3.00BZ/DZ1-98[»]
4V8CX-ray3.30AZ/BZ1-98[»]
4V8DX-ray3.00BZ/DZ1-98[»]
4V8EX-ray3.30AZ/CZ1-98[»]
4V8FX-ray3.30AZ/DZ1-98[»]
4V8GX-ray3.00B1/D11-98[»]
4V8HX-ray3.10B1/D11-98[»]
4V8IX-ray2.70B1/D11-98[»]
4V8JX-ray3.90B1/D11-98[»]
4V8NX-ray3.10B1/D11-98[»]
4V8OX-ray3.80B11-98[»]
4V8QX-ray3.10A11-98[»]
4V8UX-ray3.70B1/D11-98[»]
4V8XX-ray3.35B1/D11-98[»]
4V90X-ray2.95B12-98[»]
4V95X-ray3.20B1/D11-98[»]
4V97X-ray3.52B1/D11-98[»]
4V9AX-ray3.30BZ/DZ1-98[»]
4V9BX-ray3.10BZ/DZ1-98[»]
4V9HX-ray2.86B11-98[»]
4V9IX-ray3.30B1/D13-95[»]
4V9RX-ray3.00B1/D11-98[»]
4V9SX-ray3.10B1/D11-98[»]
4W2EX-ray2.9011-98[»]
4W2FX-ray2.40B1/D11-98[»]
4W2GX-ray2.55B1/D11-98[»]
4W2HX-ray2.70B1/D11-98[»]
4W2IX-ray2.70B1/D11-98[»]
4W4GX-ray3.30R1/Y11-98[»]
4WPOX-ray2.80A1/C11-98[»]
4WQ1X-ray3.10F5/J81-98[»]
4WQFX-ray2.80A1/C11-98[»]
4WQRX-ray3.15F5/J81-98[»]
4WQUX-ray2.80A1/C11-98[»]
4WQYX-ray2.80A1/C11-98[»]
4WR6X-ray3.05F5/J81-98[»]
4WRAX-ray3.05F5/J81-98[»]
4WROX-ray3.05J81-98[»]
4WSDX-ray2.95F5/J81-98[»]
4WSMX-ray3.30F5/J81-98[»]
4WT1X-ray3.05F5/J81-98[»]
4WT8X-ray3.40CH/DH3-95[»]
4WU1X-ray3.20F5/J81-98[»]
4WZDX-ray3.10F5/J81-98[»]
4WZOX-ray3.30F5/J81-98[»]
4Y4OX-ray2.3011/211-98[»]
4Y4PX-ray2.5011/211-98[»]
4YPBX-ray3.40R1/Y11-98[»]
4YZVX-ray3.10R1/Y11-98[»]
4Z3SX-ray2.6511/211-98[»]
4Z8CX-ray2.9011/211-98[»]
4ZERX-ray3.1011/212-98[»]
4ZSNX-ray3.60R1/Y11-98[»]
5CZPX-ray3.30R1/Y11-98[»]
5D8BX-ray3.63RB/V1-98[»]
5DFEX-ray3.10R1/Y11-98[»]
5DOXX-ray3.1011/211-98[»]
5DOYX-ray2.6011/211-98[»]
5E7KX-ray3.20F5/J81-98[»]
5E81X-ray2.95F5/J81-98[»]
5EL4X-ray3.15F5/J81-98[»]
5EL5X-ray3.15F5/J81-98[»]
5EL6X-ray3.10F5/J81-98[»]
5EL7X-ray3.15F5/J81-98[»]
5F8KX-ray2.8011/212-98[»]
5FDUX-ray2.9011/212-98[»]
5FDVX-ray2.8011/212-98[»]
5HAUX-ray3.001Z/2Z1-98[»]
5HCPX-ray2.8911/211-98[»]
5HCQX-ray2.8011/211-98[»]
5HCRX-ray2.8011/211-98[»]
5HD1X-ray2.7011/211-98[»]
5IB7X-ray2.99F5/J81-98[»]
5IB8X-ray3.13F5/J81-98[»]
5IBBX-ray2.96F5/J81-98[»]
5J30X-ray3.20R1/Y11-98[»]
5J3CX-ray3.04R1/Y11-98[»]
5J4BX-ray2.6011/211-98[»]
5J4CX-ray2.8011/211-98[»]
5J8BX-ray2.6011-98[»]
ProteinModelPortaliP60494.
SMRiP60494.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60494.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L28P family.Curated

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
HOGENOMiHOG000040463.
KOiK02902.
OMAiICEISGK.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28. 1 hit.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60494-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL
Length:98
Mass (Da):10,978
Last modified:January 23, 2007 - v3
Checksum:i0FC1FAC11DB6C379
GO

Mass spectrometryi

Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD69865.1.
RefSeqiWP_008631133.1. NC_006461.1.
YP_143308.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD69865; BAD69865; BAD69865.
GeneIDi3168111.
KEGGittj:TTHA0042.
PATRICi23955013. VBITheThe93045_0040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD69865.1.
RefSeqiWP_008631133.1. NC_006461.1.
YP_143308.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R1/Y11-98[»]
1VY4X-ray2.60B1/D11-98[»]
1VY5X-ray2.55B1/D11-98[»]
1VY6X-ray2.90B1/D11-98[»]
1VY7X-ray2.80B1/D11-98[»]
4L47X-ray3.22R1/Y11-98[»]
4L71X-ray3.90R1/Y11-98[»]
4LELX-ray3.90R1/Y11-98[»]
4LFZX-ray3.92R1/Y11-98[»]
4LNTX-ray2.94R1/Y11-98[»]
4LSKX-ray3.48R1/Y11-98[»]
4LT8X-ray3.14R1/Y11-98[»]
4P6FX-ray3.60R1/Y11-98[»]
4P70X-ray3.68R1/Y11-98[»]
4TUAX-ray3.60R1/Y11-98[»]
4TUBX-ray3.60R1/Y11-98[»]
4TUCX-ray3.60R1/Y11-98[»]
4TUDX-ray3.60R1/Y11-98[»]
4TUEX-ray3.50R1/Y11-98[»]
4V51X-ray2.80B1/D12-98[»]
4V5AX-ray3.50B1/D12-98[»]
4V5CX-ray3.30B1/D11-98[»]
4V5DX-ray3.50B1/D11-98[»]
4V5EX-ray3.45B1/D11-98[»]
4V5FX-ray3.60B1/D11-98[»]
4V5GX-ray3.60B1/D11-98[»]
4V5JX-ray3.10B1/D11-98[»]
4V5KX-ray3.20B1/D11-98[»]
4V5LX-ray3.10B11-98[»]
4V5Melectron microscopy7.80B11-98[»]
4V5Nelectron microscopy7.60B11-98[»]
4V5PX-ray3.10B1/D11-98[»]
4V5QX-ray3.10B1/D11-98[»]
4V5RX-ray3.10B1/D11-98[»]
4V5SX-ray3.10B1/D11-98[»]
4V68electron microscopy6.40B18-96[»]
4V6AX-ray3.10B1/D11-98[»]
4V6FX-ray3.10AZ/DZ1-98[»]
4V6GX-ray3.50BZ/DZ1-98[»]
4V7JX-ray3.30A1/B11-98[»]
4V7KX-ray3.60A1/B11-98[»]
4V7LX-ray3.00B1/D11-98[»]
4V7MX-ray3.45B1/D11-98[»]
4V7WX-ray3.00B1/D11-98[»]
4V7XX-ray3.00B1/D11-98[»]
4V7YX-ray3.00B1/D11-98[»]
4V7ZX-ray3.10B1/D11-98[»]
4V87X-ray3.10AZ/DZ2-98[»]
4V8AX-ray3.20A1/B11-98[»]
4V8BX-ray3.00BZ/DZ1-98[»]
4V8CX-ray3.30AZ/BZ1-98[»]
4V8DX-ray3.00BZ/DZ1-98[»]
4V8EX-ray3.30AZ/CZ1-98[»]
4V8FX-ray3.30AZ/DZ1-98[»]
4V8GX-ray3.00B1/D11-98[»]
4V8HX-ray3.10B1/D11-98[»]
4V8IX-ray2.70B1/D11-98[»]
4V8JX-ray3.90B1/D11-98[»]
4V8NX-ray3.10B1/D11-98[»]
4V8OX-ray3.80B11-98[»]
4V8QX-ray3.10A11-98[»]
4V8UX-ray3.70B1/D11-98[»]
4V8XX-ray3.35B1/D11-98[»]
4V90X-ray2.95B12-98[»]
4V95X-ray3.20B1/D11-98[»]
4V97X-ray3.52B1/D11-98[»]
4V9AX-ray3.30BZ/DZ1-98[»]
4V9BX-ray3.10BZ/DZ1-98[»]
4V9HX-ray2.86B11-98[»]
4V9IX-ray3.30B1/D13-95[»]
4V9RX-ray3.00B1/D11-98[»]
4V9SX-ray3.10B1/D11-98[»]
4W2EX-ray2.9011-98[»]
4W2FX-ray2.40B1/D11-98[»]
4W2GX-ray2.55B1/D11-98[»]
4W2HX-ray2.70B1/D11-98[»]
4W2IX-ray2.70B1/D11-98[»]
4W4GX-ray3.30R1/Y11-98[»]
4WPOX-ray2.80A1/C11-98[»]
4WQ1X-ray3.10F5/J81-98[»]
4WQFX-ray2.80A1/C11-98[»]
4WQRX-ray3.15F5/J81-98[»]
4WQUX-ray2.80A1/C11-98[»]
4WQYX-ray2.80A1/C11-98[»]
4WR6X-ray3.05F5/J81-98[»]
4WRAX-ray3.05F5/J81-98[»]
4WROX-ray3.05J81-98[»]
4WSDX-ray2.95F5/J81-98[»]
4WSMX-ray3.30F5/J81-98[»]
4WT1X-ray3.05F5/J81-98[»]
4WT8X-ray3.40CH/DH3-95[»]
4WU1X-ray3.20F5/J81-98[»]
4WZDX-ray3.10F5/J81-98[»]
4WZOX-ray3.30F5/J81-98[»]
4Y4OX-ray2.3011/211-98[»]
4Y4PX-ray2.5011/211-98[»]
4YPBX-ray3.40R1/Y11-98[»]
4YZVX-ray3.10R1/Y11-98[»]
4Z3SX-ray2.6511/211-98[»]
4Z8CX-ray2.9011/211-98[»]
4ZERX-ray3.1011/212-98[»]
4ZSNX-ray3.60R1/Y11-98[»]
5CZPX-ray3.30R1/Y11-98[»]
5D8BX-ray3.63RB/V1-98[»]
5DFEX-ray3.10R1/Y11-98[»]
5DOXX-ray3.1011/211-98[»]
5DOYX-ray2.6011/211-98[»]
5E7KX-ray3.20F5/J81-98[»]
5E81X-ray2.95F5/J81-98[»]
5EL4X-ray3.15F5/J81-98[»]
5EL5X-ray3.15F5/J81-98[»]
5EL6X-ray3.10F5/J81-98[»]
5EL7X-ray3.15F5/J81-98[»]
5F8KX-ray2.8011/212-98[»]
5FDUX-ray2.9011/212-98[»]
5FDVX-ray2.8011/212-98[»]
5HAUX-ray3.001Z/2Z1-98[»]
5HCPX-ray2.8911/211-98[»]
5HCQX-ray2.8011/211-98[»]
5HCRX-ray2.8011/211-98[»]
5HD1X-ray2.7011/211-98[»]
5IB7X-ray2.99F5/J81-98[»]
5IB8X-ray3.13F5/J81-98[»]
5IBBX-ray2.96F5/J81-98[»]
5J30X-ray3.20R1/Y11-98[»]
5J3CX-ray3.04R1/Y11-98[»]
5J4BX-ray2.6011/211-98[»]
5J4CX-ray2.8011/211-98[»]
5J8BX-ray2.6011-98[»]
ProteinModelPortaliP60494.
SMRiP60494.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0042.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD69865; BAD69865; BAD69865.
GeneIDi3168111.
KEGGittj:TTHA0042.
PATRICi23955013. VBITheThe93045_0040.

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
HOGENOMiHOG000040463.
KOiK02902.
OMAiICEISGK.

Miscellaneous databases

EvolutionaryTraceiP60494.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28. 1 hit.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL28_THET8
AccessioniPrimary (citable) accession number: P60494
Secondary accession number(s): Q5SMA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 103 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.