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P60494

- RL28_THET8

UniProt

P60494 - RL28_THET8

Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-45-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L28
    Gene namesi
    Name:rpmB
    Ordered Locus Names:TTHA0042
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 989750S ribosomal protein L28PRO_0000178577Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA0042.

    Structurei

    Secondary structure

    1
    98
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni6 – 83
    Beta strandi13 – 2311
    Helixi25 – 273
    Beta strandi29 – 4214
    Beta strandi46 – 538
    Beta strandi56 – 638
    Helixi64 – 663
    Helixi67 – 7610
    Helixi77 – 793
    Beta strandi82 – 843
    Helixi87 – 9610

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2J01X-ray2.8012-98[»]
    2J03X-ray2.8012-98[»]
    2V47X-ray3.5012-98[»]
    2V49X-ray3.5012-98[»]
    2WDIX-ray3.3011-98[»]
    2WDJX-ray3.3011-98[»]
    2WDLX-ray3.5011-98[»]
    2WDNX-ray3.5011-98[»]
    2WH2X-ray3.4511-98[»]
    2WH4X-ray3.4511-98[»]
    2WRJX-ray3.6011-98[»]
    2WRLX-ray3.6011-98[»]
    2WROX-ray3.6011-98[»]
    2WRRX-ray3.6011-98[»]
    2X9SX-ray3.1011-98[»]
    2X9UX-ray3.1011-98[»]
    2XG0X-ray3.2011-98[»]
    2XG2X-ray3.2011-98[»]
    2XQEX-ray3.1011-98[»]
    2XTGelectron microscopy7.8011-98[»]
    2XUXelectron microscopy7.6011-98[»]
    2Y0VX-ray3.1011-98[»]
    2Y0XX-ray3.1011-98[»]
    2Y0ZX-ray3.1011-98[»]
    2Y11X-ray3.1011-98[»]
    2Y13X-ray3.1011-98[»]
    2Y15X-ray3.1011-98[»]
    2Y17X-ray3.1011-98[»]
    2Y19X-ray3.1011-98[»]
    3FINelectron microscopy6.4018-96[»]
    3HUXX-ray3.1011-98[»]
    3HUZX-ray3.1011-98[»]
    3I8FX-ray3.10Z1-98[»]
    3I8IX-ray3.10Z1-98[»]
    3I9CX-ray3.50Z1-98[»]
    3I9EX-ray3.50Z1-98[»]
    3KIRX-ray3.3011-98[»]
    3KITX-ray3.3011-98[»]
    3KIWX-ray3.6011-98[»]
    3KIYX-ray3.6011-98[»]
    3KNIX-ray3.0011-98[»]
    3KNKX-ray3.0011-98[»]
    3KNMX-ray3.4511-98[»]
    3KNOX-ray3.4511-98[»]
    3OH5X-ray3.0011-98[»]
    3OH7X-ray3.0011-98[»]
    3OHJX-ray3.0011-98[»]
    3OHKX-ray3.0011-98[»]
    3OHZX-ray3.0011-98[»]
    3OI1X-ray3.0011-98[»]
    3OI3X-ray3.1011-98[»]
    3OI5X-ray3.1011-98[»]
    3TVEX-ray3.10Z2-98[»]
    3TVHX-ray3.10Z2-98[»]
    3UXQX-ray3.2011-98[»]
    3UXRX-ray3.2011-98[»]
    3UYEX-ray3.00Z1-98[»]
    3UYGX-ray3.00Z1-98[»]
    3UZ1X-ray3.30Z1-98[»]
    3UZ2X-ray3.30Z1-98[»]
    3UZ8X-ray3.00Z1-98[»]
    3UZ9X-ray3.00Z1-98[»]
    3UZFX-ray3.30Z1-98[»]
    3UZHX-ray3.30Z1-98[»]
    3UZKX-ray3.30Z1-98[»]
    3UZNX-ray3.30Z1-98[»]
    3V23X-ray3.0011-98[»]
    3V25X-ray3.0011-98[»]
    3V27X-ray3.1011-98[»]
    3V29X-ray3.1011-98[»]
    3V2DX-ray2.7011-98[»]
    3V2FX-ray2.7011-98[»]
    3V6WX-ray3.9011-98[»]
    3V6XX-ray3.9011-98[»]
    3ZN9X-ray3.1011-98[»]
    3ZNEX-ray3.1011-98[»]
    3ZVPX-ray3.8011-98[»]
    4ABSX-ray3.1011-98[»]
    4B8GX-ray3.7011-98[»]
    4B8IX-ray3.7011-98[»]
    4BTDX-ray2.9512-98[»]
    4BYCX-ray3.3511-98[»]
    4BYEX-ray3.3511-98[»]
    4DHAX-ray3.2011-98[»]
    4DHCX-ray3.2011-98[»]
    4EJBX-ray3.5211-98[»]
    4EJCX-ray3.5211-98[»]
    4G5LX-ray3.30Z1-98[»]
    4G5NX-ray3.30Z1-98[»]
    4G5UX-ray3.10Z1-98[»]
    4G5WX-ray3.10Z1-98[»]
    4JUXX-ray2.8611-98[»]
    4K0MX-ray3.3013-95[»]
    4K0QX-ray3.3013-95[»]
    4NVVX-ray3.0011-98[»]
    4NVXX-ray3.0011-98[»]
    4NVZX-ray3.1011-98[»]
    4NW1X-ray3.1011-98[»]
    ProteinModelPortaliP60494.
    SMRiP60494. Positions 8-95.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP60494.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L28P family.Curated

    Phylogenomic databases

    eggNOGiCOG0227.
    HOGENOMiHOG000040463.
    KOiK02902.
    OMAiVANSHAH.
    OrthoDBiEOG6W727M.

    Family and domain databases

    HAMAPiMF_00373. Ribosomal_L28.
    InterProiIPR001383. Ribosomal_L28.
    [Graphical view]
    PfamiPF00830. Ribosomal_L28. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00009. L28. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P60494-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR   50
    VRVAGQEITF RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL 98
    Length:98
    Mass (Da):10,978
    Last modified:January 23, 2007 - v3
    Checksum:i0FC1FAC11DB6C379
    GO

    Mass spectrometryi

    Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD69865.1.
    RefSeqiYP_143308.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD69865; BAD69865; BAD69865.
    GeneIDi3168111.
    KEGGittj:TTHA0042.
    PATRICi23955013. VBITheThe93045_0040.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD69865.1 .
    RefSeqi YP_143308.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2J01 X-ray 2.80 1 2-98 [» ]
    2J03 X-ray 2.80 1 2-98 [» ]
    2V47 X-ray 3.50 1 2-98 [» ]
    2V49 X-ray 3.50 1 2-98 [» ]
    2WDI X-ray 3.30 1 1-98 [» ]
    2WDJ X-ray 3.30 1 1-98 [» ]
    2WDL X-ray 3.50 1 1-98 [» ]
    2WDN X-ray 3.50 1 1-98 [» ]
    2WH2 X-ray 3.45 1 1-98 [» ]
    2WH4 X-ray 3.45 1 1-98 [» ]
    2WRJ X-ray 3.60 1 1-98 [» ]
    2WRL X-ray 3.60 1 1-98 [» ]
    2WRO X-ray 3.60 1 1-98 [» ]
    2WRR X-ray 3.60 1 1-98 [» ]
    2X9S X-ray 3.10 1 1-98 [» ]
    2X9U X-ray 3.10 1 1-98 [» ]
    2XG0 X-ray 3.20 1 1-98 [» ]
    2XG2 X-ray 3.20 1 1-98 [» ]
    2XQE X-ray 3.10 1 1-98 [» ]
    2XTG electron microscopy 7.80 1 1-98 [» ]
    2XUX electron microscopy 7.60 1 1-98 [» ]
    2Y0V X-ray 3.10 1 1-98 [» ]
    2Y0X X-ray 3.10 1 1-98 [» ]
    2Y0Z X-ray 3.10 1 1-98 [» ]
    2Y11 X-ray 3.10 1 1-98 [» ]
    2Y13 X-ray 3.10 1 1-98 [» ]
    2Y15 X-ray 3.10 1 1-98 [» ]
    2Y17 X-ray 3.10 1 1-98 [» ]
    2Y19 X-ray 3.10 1 1-98 [» ]
    3FIN electron microscopy 6.40 1 8-96 [» ]
    3HUX X-ray 3.10 1 1-98 [» ]
    3HUZ X-ray 3.10 1 1-98 [» ]
    3I8F X-ray 3.10 Z 1-98 [» ]
    3I8I X-ray 3.10 Z 1-98 [» ]
    3I9C X-ray 3.50 Z 1-98 [» ]
    3I9E X-ray 3.50 Z 1-98 [» ]
    3KIR X-ray 3.30 1 1-98 [» ]
    3KIT X-ray 3.30 1 1-98 [» ]
    3KIW X-ray 3.60 1 1-98 [» ]
    3KIY X-ray 3.60 1 1-98 [» ]
    3KNI X-ray 3.00 1 1-98 [» ]
    3KNK X-ray 3.00 1 1-98 [» ]
    3KNM X-ray 3.45 1 1-98 [» ]
    3KNO X-ray 3.45 1 1-98 [» ]
    3OH5 X-ray 3.00 1 1-98 [» ]
    3OH7 X-ray 3.00 1 1-98 [» ]
    3OHJ X-ray 3.00 1 1-98 [» ]
    3OHK X-ray 3.00 1 1-98 [» ]
    3OHZ X-ray 3.00 1 1-98 [» ]
    3OI1 X-ray 3.00 1 1-98 [» ]
    3OI3 X-ray 3.10 1 1-98 [» ]
    3OI5 X-ray 3.10 1 1-98 [» ]
    3TVE X-ray 3.10 Z 2-98 [» ]
    3TVH X-ray 3.10 Z 2-98 [» ]
    3UXQ X-ray 3.20 1 1-98 [» ]
    3UXR X-ray 3.20 1 1-98 [» ]
    3UYE X-ray 3.00 Z 1-98 [» ]
    3UYG X-ray 3.00 Z 1-98 [» ]
    3UZ1 X-ray 3.30 Z 1-98 [» ]
    3UZ2 X-ray 3.30 Z 1-98 [» ]
    3UZ8 X-ray 3.00 Z 1-98 [» ]
    3UZ9 X-ray 3.00 Z 1-98 [» ]
    3UZF X-ray 3.30 Z 1-98 [» ]
    3UZH X-ray 3.30 Z 1-98 [» ]
    3UZK X-ray 3.30 Z 1-98 [» ]
    3UZN X-ray 3.30 Z 1-98 [» ]
    3V23 X-ray 3.00 1 1-98 [» ]
    3V25 X-ray 3.00 1 1-98 [» ]
    3V27 X-ray 3.10 1 1-98 [» ]
    3V29 X-ray 3.10 1 1-98 [» ]
    3V2D X-ray 2.70 1 1-98 [» ]
    3V2F X-ray 2.70 1 1-98 [» ]
    3V6W X-ray 3.90 1 1-98 [» ]
    3V6X X-ray 3.90 1 1-98 [» ]
    3ZN9 X-ray 3.10 1 1-98 [» ]
    3ZNE X-ray 3.10 1 1-98 [» ]
    3ZVP X-ray 3.80 1 1-98 [» ]
    4ABS X-ray 3.10 1 1-98 [» ]
    4B8G X-ray 3.70 1 1-98 [» ]
    4B8I X-ray 3.70 1 1-98 [» ]
    4BTD X-ray 2.95 1 2-98 [» ]
    4BYC X-ray 3.35 1 1-98 [» ]
    4BYE X-ray 3.35 1 1-98 [» ]
    4DHA X-ray 3.20 1 1-98 [» ]
    4DHC X-ray 3.20 1 1-98 [» ]
    4EJB X-ray 3.52 1 1-98 [» ]
    4EJC X-ray 3.52 1 1-98 [» ]
    4G5L X-ray 3.30 Z 1-98 [» ]
    4G5N X-ray 3.30 Z 1-98 [» ]
    4G5U X-ray 3.10 Z 1-98 [» ]
    4G5W X-ray 3.10 Z 1-98 [» ]
    4JUX X-ray 2.86 1 1-98 [» ]
    4K0M X-ray 3.30 1 3-95 [» ]
    4K0Q X-ray 3.30 1 3-95 [» ]
    4NVV X-ray 3.00 1 1-98 [» ]
    4NVX X-ray 3.00 1 1-98 [» ]
    4NVZ X-ray 3.10 1 1-98 [» ]
    4NW1 X-ray 3.10 1 1-98 [» ]
    ProteinModelPortali P60494.
    SMRi P60494. Positions 8-95.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0042.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD69865 ; BAD69865 ; BAD69865 .
    GeneIDi 3168111.
    KEGGi ttj:TTHA0042.
    PATRICi 23955013. VBITheThe93045_0040.

    Phylogenomic databases

    eggNOGi COG0227.
    HOGENOMi HOG000040463.
    KOi K02902.
    OMAi VANSHAH.
    OrthoDBi EOG6W727M.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-45-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P60494.

    Family and domain databases

    HAMAPi MF_00373. Ribosomal_L28.
    InterProi IPR001383. Ribosomal_L28.
    [Graphical view ]
    Pfami PF00830. Ribosomal_L28. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00009. L28. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-21.
    3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    4. Cited for: STRUCTURE OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL28_THET8
    AccessioniPrimary (citable) accession number: P60494
    Secondary accession number(s): Q5SMA1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 1, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 81 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3