50S ribosomal protein L28 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Contribute

Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot P60494 (RL28_THET8)

Last modified November 3, 2009. Version 42. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data |

Customize display

text xml rdf/xml gff fasta

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
50S ribosomal protein L28

Gene names

Name:	rpmB
Ordered Locus Names:	TTHA0042

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length	98 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subunit structure	Part of the 50S ribosomal subunit. HAMAP MF_00373
Sequence similarities	Belongs to the ribosomal protein L28P family.
Mass spectrometry	Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. Ref.3

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

1

Removed Ref.2

Chain

97

50S ribosomal protein L28 HAMAP MF_00373

PRO_0000178577

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

98

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P60494-1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 0FC1FAC11DB6C379
Show »

98

10,978

        10         20         30         40         50         60 
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR VRVAGQEITF 

        70         80         90 
RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus." Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T. Biol. Chem. 381:1079-1087(2000) [PubMed: 11154066] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-21.
[3]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed: 16287167] [Abstract] Cited for: MASS SPECTROMETRY.
[4]	"Crystal structure of the ribosome at 5.5 A resolution." Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F. Science 292:883-896(2001) [PubMed: 11283358] [Abstract] Cited for: STRUCTURE OF THE RIBOSOME.
+	Additional computationally mapped references.

Cross-references

Sequence databases

AP008226 Genomic DNA. Translation: BAD69865.1.

RefSeq

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2J01	X-ray	2.80	1	2-97	[»]
2J03	X-ray	2.80	1	2-97	[»]
2V47	X-ray	3.80	1	2-97	[»]
2V49	X-ray	3.80	1	2-97	[»]
2WDI	X-ray	3.30	1	1-98	[»]
2WDJ	X-ray	3.30	1	1-98	[»]
2WDL	X-ray	3.50	1	1-98	[»]
2WDN	X-ray	3.50	1	1-98	[»]
2WH2	X-ray	3.45	1	1-98	[»]
2WH4	X-ray	3.45	1	1-98	[»]
3FIN	electron microscopy	6.40	1	8-96	[»]

SMR

P60494. Positions 8-95.

ModBase

Protein-protein interaction databases

STRING

Genome annotation databases

GeneID

GenomeReviews

Gene locus TTHA0042 in contig AP008226_GR.

KEGG

NMPDR

fig|300852.3.peg.73.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

Enzyme and pathway databases

BioCyc

TTHE300852:TTHA0042-MON.

Family and domain databases

HAMAP

MF_00373.
[Tree]

InterPro

IPR001383. Ribosomal_L28.
[Graphical view]

TIGRFAMs

TIGR00009. L28. 1 hit.

ProtoNet

Entry information

Entry name

RL28_THET8

Accession

Primary (citable) accession number: P60494
Secondary accession number(s): Q5SMA1

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 1, 2004
Last sequence update:	January 23, 2007
Last modified:	November 3, 2009
This is version 42 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents