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P60494

- RL28_THET8

UniProt

P60494 - RL28_THET8

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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-45-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28
Gene namesi
Name:rpmB
Ordered Locus Names:TTHA0042
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 989750S ribosomal protein L28PRO_0000178577Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0042.

Structurei

Secondary structure

1
98
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni6 – 83Combined sources
Beta strandi13 – 2311Combined sources
Helixi25 – 273Combined sources
Beta strandi29 – 4214Combined sources
Beta strandi46 – 538Combined sources
Beta strandi56 – 638Combined sources
Helixi64 – 663Combined sources
Helixi67 – 7610Combined sources
Helixi77 – 793Combined sources
Beta strandi82 – 843Combined sources
Helixi87 – 9610Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2211-98[»]
1VVOX-ray3.2211-98[»]
1VVQX-ray3.9011-98[»]
1VVSX-ray3.9011-98[»]
1VVUX-ray3.9011-98[»]
1VVWX-ray3.9011-98[»]
1VVYX-ray3.9211-98[»]
1VW0X-ray3.9211-98[»]
1VX9X-ray2.9411-98[»]
1VXJX-ray2.9411-98[»]
1VXLX-ray3.4811-98[»]
1VXNX-ray3.4811-98[»]
1VXQX-ray3.1411-98[»]
1VXTX-ray3.1411-98[»]
1VY1X-ray3.6811-98[»]
1VY3X-ray3.6811-98[»]
2J01X-ray2.8012-98[»]
2J03X-ray2.8012-98[»]
2V47X-ray3.5012-98[»]
2V49X-ray3.5012-98[»]
2WDIX-ray3.3011-98[»]
2WDJX-ray3.3011-98[»]
2WDLX-ray3.5011-98[»]
2WDNX-ray3.5011-98[»]
2WH2X-ray3.4511-98[»]
2WH4X-ray3.4511-98[»]
2WRJX-ray3.6011-98[»]
2WRLX-ray3.6011-98[»]
2WROX-ray3.6011-98[»]
2WRRX-ray3.6011-98[»]
2X9SX-ray3.1011-98[»]
2X9UX-ray3.1011-98[»]
2XG0X-ray3.2011-98[»]
2XG2X-ray3.2011-98[»]
2XQEX-ray3.1011-98[»]
2XTGelectron microscopy7.8011-98[»]
2XUXelectron microscopy7.6011-98[»]
2Y0VX-ray3.1011-98[»]
2Y0XX-ray3.1011-98[»]
2Y0ZX-ray3.1011-98[»]
2Y11X-ray3.1011-98[»]
2Y13X-ray3.1011-98[»]
2Y15X-ray3.1011-98[»]
2Y17X-ray3.1011-98[»]
2Y19X-ray3.1011-98[»]
3FINelectron microscopy6.4018-96[»]
3HUXX-ray3.1011-98[»]
3HUZX-ray3.1011-98[»]
3I8FX-ray3.10Z1-98[»]
3I8IX-ray3.10Z1-98[»]
3I9CX-ray3.50Z1-98[»]
3I9EX-ray3.50Z1-98[»]
3KIRX-ray3.3011-98[»]
3KITX-ray3.3011-98[»]
3KIWX-ray3.6011-98[»]
3KIYX-ray3.6011-98[»]
3KNIX-ray3.0011-98[»]
3KNKX-ray3.0011-98[»]
3KNMX-ray3.4511-98[»]
3KNOX-ray3.4511-98[»]
3OH5X-ray3.0011-98[»]
3OH7X-ray3.0011-98[»]
3OHJX-ray3.0011-98[»]
3OHKX-ray3.0011-98[»]
3OHZX-ray3.0011-98[»]
3OI1X-ray3.0011-98[»]
3OI3X-ray3.1011-98[»]
3OI5X-ray3.1011-98[»]
3TVEX-ray3.10Z2-98[»]
3TVHX-ray3.10Z2-98[»]
3UXQX-ray3.2011-98[»]
3UXRX-ray3.2011-98[»]
3UYEX-ray3.00Z1-98[»]
3UYGX-ray3.00Z1-98[»]
3UZ1X-ray3.30Z1-98[»]
3UZ2X-ray3.30Z1-98[»]
3UZ8X-ray3.00Z1-98[»]
3UZ9X-ray3.00Z1-98[»]
3UZFX-ray3.30Z1-98[»]
3UZHX-ray3.30Z1-98[»]
3UZKX-ray3.30Z1-98[»]
3UZNX-ray3.30Z1-98[»]
3V23X-ray3.0011-98[»]
3V25X-ray3.0011-98[»]
3V27X-ray3.1011-98[»]
3V29X-ray3.1011-98[»]
3V2DX-ray2.7011-98[»]
3V2FX-ray2.7011-98[»]
3V6WX-ray3.9011-98[»]
3V6XX-ray3.9011-98[»]
3ZN9X-ray3.1011-98[»]
3ZNEX-ray3.1011-98[»]
3ZVPX-ray3.8011-98[»]
4ABSX-ray3.1011-98[»]
4B8GX-ray3.7011-98[»]
4B8IX-ray3.7011-98[»]
4BTDX-ray2.9512-98[»]
4BYCX-ray3.3511-98[»]
4BYEX-ray3.3511-98[»]
4DHAX-ray3.2011-98[»]
4DHCX-ray3.2011-98[»]
4EJBX-ray3.5211-98[»]
4EJCX-ray3.5211-98[»]
4G5LX-ray3.30Z1-98[»]
4G5NX-ray3.30Z1-98[»]
4G5UX-ray3.10Z1-98[»]
4G5WX-ray3.10Z1-98[»]
4JUXX-ray2.8611-98[»]
4K0MX-ray3.3013-95[»]
4K0QX-ray3.3013-95[»]
4KX0X-ray3.4411-98[»]
4KX2X-ray3.4411-98[»]
4NVVX-ray3.0011-98[»]
4NVXX-ray3.0011-98[»]
4NVZX-ray3.1011-98[»]
4NW1X-ray3.1011-98[»]
4QCNX-ray2.6011-98[»]
4QCPX-ray2.6011-98[»]
4QCRX-ray2.5511-98[»]
4QCTX-ray2.5511-98[»]
4QCVX-ray2.9011-98[»]
4QCXX-ray2.9011-98[»]
4QCZX-ray2.8011-98[»]
4QD1X-ray2.8011-98[»]
ProteinModelPortaliP60494.
SMRiP60494. Positions 8-95.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60494.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L28P family.Curated

Phylogenomic databases

eggNOGiCOG0227.
HOGENOMiHOG000040463.
KOiK02902.
OMAiVANSHAH.
OrthoDBiEOG6W727M.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60494-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL
Length:98
Mass (Da):10,978
Last modified:January 23, 2007 - v3
Checksum:i0FC1FAC11DB6C379
GO

Mass spectrometryi

Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD69865.1.
RefSeqiYP_143308.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD69865; BAD69865; BAD69865.
GeneIDi3168111.
KEGGittj:TTHA0042.
PATRICi23955013. VBITheThe93045_0040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD69865.1 .
RefSeqi YP_143308.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VVM X-ray 3.22 1 1-98 [» ]
1VVO X-ray 3.22 1 1-98 [» ]
1VVQ X-ray 3.90 1 1-98 [» ]
1VVS X-ray 3.90 1 1-98 [» ]
1VVU X-ray 3.90 1 1-98 [» ]
1VVW X-ray 3.90 1 1-98 [» ]
1VVY X-ray 3.92 1 1-98 [» ]
1VW0 X-ray 3.92 1 1-98 [» ]
1VX9 X-ray 2.94 1 1-98 [» ]
1VXJ X-ray 2.94 1 1-98 [» ]
1VXL X-ray 3.48 1 1-98 [» ]
1VXN X-ray 3.48 1 1-98 [» ]
1VXQ X-ray 3.14 1 1-98 [» ]
1VXT X-ray 3.14 1 1-98 [» ]
1VY1 X-ray 3.68 1 1-98 [» ]
1VY3 X-ray 3.68 1 1-98 [» ]
2J01 X-ray 2.80 1 2-98 [» ]
2J03 X-ray 2.80 1 2-98 [» ]
2V47 X-ray 3.50 1 2-98 [» ]
2V49 X-ray 3.50 1 2-98 [» ]
2WDI X-ray 3.30 1 1-98 [» ]
2WDJ X-ray 3.30 1 1-98 [» ]
2WDL X-ray 3.50 1 1-98 [» ]
2WDN X-ray 3.50 1 1-98 [» ]
2WH2 X-ray 3.45 1 1-98 [» ]
2WH4 X-ray 3.45 1 1-98 [» ]
2WRJ X-ray 3.60 1 1-98 [» ]
2WRL X-ray 3.60 1 1-98 [» ]
2WRO X-ray 3.60 1 1-98 [» ]
2WRR X-ray 3.60 1 1-98 [» ]
2X9S X-ray 3.10 1 1-98 [» ]
2X9U X-ray 3.10 1 1-98 [» ]
2XG0 X-ray 3.20 1 1-98 [» ]
2XG2 X-ray 3.20 1 1-98 [» ]
2XQE X-ray 3.10 1 1-98 [» ]
2XTG electron microscopy 7.80 1 1-98 [» ]
2XUX electron microscopy 7.60 1 1-98 [» ]
2Y0V X-ray 3.10 1 1-98 [» ]
2Y0X X-ray 3.10 1 1-98 [» ]
2Y0Z X-ray 3.10 1 1-98 [» ]
2Y11 X-ray 3.10 1 1-98 [» ]
2Y13 X-ray 3.10 1 1-98 [» ]
2Y15 X-ray 3.10 1 1-98 [» ]
2Y17 X-ray 3.10 1 1-98 [» ]
2Y19 X-ray 3.10 1 1-98 [» ]
3FIN electron microscopy 6.40 1 8-96 [» ]
3HUX X-ray 3.10 1 1-98 [» ]
3HUZ X-ray 3.10 1 1-98 [» ]
3I8F X-ray 3.10 Z 1-98 [» ]
3I8I X-ray 3.10 Z 1-98 [» ]
3I9C X-ray 3.50 Z 1-98 [» ]
3I9E X-ray 3.50 Z 1-98 [» ]
3KIR X-ray 3.30 1 1-98 [» ]
3KIT X-ray 3.30 1 1-98 [» ]
3KIW X-ray 3.60 1 1-98 [» ]
3KIY X-ray 3.60 1 1-98 [» ]
3KNI X-ray 3.00 1 1-98 [» ]
3KNK X-ray 3.00 1 1-98 [» ]
3KNM X-ray 3.45 1 1-98 [» ]
3KNO X-ray 3.45 1 1-98 [» ]
3OH5 X-ray 3.00 1 1-98 [» ]
3OH7 X-ray 3.00 1 1-98 [» ]
3OHJ X-ray 3.00 1 1-98 [» ]
3OHK X-ray 3.00 1 1-98 [» ]
3OHZ X-ray 3.00 1 1-98 [» ]
3OI1 X-ray 3.00 1 1-98 [» ]
3OI3 X-ray 3.10 1 1-98 [» ]
3OI5 X-ray 3.10 1 1-98 [» ]
3TVE X-ray 3.10 Z 2-98 [» ]
3TVH X-ray 3.10 Z 2-98 [» ]
3UXQ X-ray 3.20 1 1-98 [» ]
3UXR X-ray 3.20 1 1-98 [» ]
3UYE X-ray 3.00 Z 1-98 [» ]
3UYG X-ray 3.00 Z 1-98 [» ]
3UZ1 X-ray 3.30 Z 1-98 [» ]
3UZ2 X-ray 3.30 Z 1-98 [» ]
3UZ8 X-ray 3.00 Z 1-98 [» ]
3UZ9 X-ray 3.00 Z 1-98 [» ]
3UZF X-ray 3.30 Z 1-98 [» ]
3UZH X-ray 3.30 Z 1-98 [» ]
3UZK X-ray 3.30 Z 1-98 [» ]
3UZN X-ray 3.30 Z 1-98 [» ]
3V23 X-ray 3.00 1 1-98 [» ]
3V25 X-ray 3.00 1 1-98 [» ]
3V27 X-ray 3.10 1 1-98 [» ]
3V29 X-ray 3.10 1 1-98 [» ]
3V2D X-ray 2.70 1 1-98 [» ]
3V2F X-ray 2.70 1 1-98 [» ]
3V6W X-ray 3.90 1 1-98 [» ]
3V6X X-ray 3.90 1 1-98 [» ]
3ZN9 X-ray 3.10 1 1-98 [» ]
3ZNE X-ray 3.10 1 1-98 [» ]
3ZVP X-ray 3.80 1 1-98 [» ]
4ABS X-ray 3.10 1 1-98 [» ]
4B8G X-ray 3.70 1 1-98 [» ]
4B8I X-ray 3.70 1 1-98 [» ]
4BTD X-ray 2.95 1 2-98 [» ]
4BYC X-ray 3.35 1 1-98 [» ]
4BYE X-ray 3.35 1 1-98 [» ]
4DHA X-ray 3.20 1 1-98 [» ]
4DHC X-ray 3.20 1 1-98 [» ]
4EJB X-ray 3.52 1 1-98 [» ]
4EJC X-ray 3.52 1 1-98 [» ]
4G5L X-ray 3.30 Z 1-98 [» ]
4G5N X-ray 3.30 Z 1-98 [» ]
4G5U X-ray 3.10 Z 1-98 [» ]
4G5W X-ray 3.10 Z 1-98 [» ]
4JUX X-ray 2.86 1 1-98 [» ]
4K0M X-ray 3.30 1 3-95 [» ]
4K0Q X-ray 3.30 1 3-95 [» ]
4KX0 X-ray 3.44 1 1-98 [» ]
4KX2 X-ray 3.44 1 1-98 [» ]
4NVV X-ray 3.00 1 1-98 [» ]
4NVX X-ray 3.00 1 1-98 [» ]
4NVZ X-ray 3.10 1 1-98 [» ]
4NW1 X-ray 3.10 1 1-98 [» ]
4QCN X-ray 2.60 1 1-98 [» ]
4QCP X-ray 2.60 1 1-98 [» ]
4QCR X-ray 2.55 1 1-98 [» ]
4QCT X-ray 2.55 1 1-98 [» ]
4QCV X-ray 2.90 1 1-98 [» ]
4QCX X-ray 2.90 1 1-98 [» ]
4QCZ X-ray 2.80 1 1-98 [» ]
4QD1 X-ray 2.80 1 1-98 [» ]
ProteinModelPortali P60494.
SMRi P60494. Positions 8-95.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0042.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD69865 ; BAD69865 ; BAD69865 .
GeneIDi 3168111.
KEGGi ttj:TTHA0042.
PATRICi 23955013. VBITheThe93045_0040.

Phylogenomic databases

eggNOGi COG0227.
HOGENOMi HOG000040463.
KOi K02902.
OMAi VANSHAH.
OrthoDBi EOG6W727M.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-45-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60494.

Family and domain databases

HAMAPi MF_00373. Ribosomal_L28.
InterProi IPR001383. Ribosomal_L28.
[Graphical view ]
Pfami PF00830. Ribosomal_L28. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00009. L28. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-21.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL28_THET8
AccessioniPrimary (citable) accession number: P60494
Secondary accession number(s): Q5SMA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 82 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3