Skip Header

Contribute Send feedback
Read comments (?) or add your own

P60494 (RL28_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L28
Gene names
Name:rpmB
Ordered Locus Names:TTHA0042
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length98 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L28P family.

Mass spectrometry

Molecular mass is 10848 Da from positions 2 - 98. Determined by MALDI. Ref.3

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2
Chain2 – 989750S ribosomal protein L28 HAMAP-Rule MF_00373
PRO_0000178577

Secondary structure

1 .................... 98
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P60494 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 0FC1FAC11DB6C379

FASTA9810,978
        10         20         30         40         50         60 
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR VRVAGQEITF 

        70         80         90 
RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-21.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD69865.1.
RefSeqYP_143308.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2J01X-ray2.8011-98[»]
2J03X-ray2.8011-98[»]
2V47X-ray3.8012-97[»]
2V49X-ray3.8012-97[»]
2WDIX-ray3.3011-98[»]
2WDJX-ray3.3011-98[»]
2WDLX-ray3.5011-98[»]
2WDNX-ray3.5011-98[»]
2WH2X-ray3.4511-98[»]
2WH4X-ray3.4511-98[»]
2WRJX-ray3.6011-98[»]
2WRLX-ray3.6011-98[»]
2WROX-ray3.6011-98[»]
2WRRX-ray3.6011-98[»]
2X9SX-ray3.1011-98[»]
2X9UX-ray3.1011-98[»]
2XG0X-ray3.2011-98[»]
2XG2X-ray3.2011-98[»]
2XQEX-ray3.1011-98[»]
2XTGelectron microscopy7.8011-98[»]
2XUXelectron microscopy7.6011-98[»]
2Y0VX-ray3.1011-98[»]
2Y0XX-ray3.1011-98[»]
2Y0ZX-ray3.1011-98[»]
2Y11X-ray3.1011-98[»]
2Y13X-ray3.1011-98[»]
2Y15X-ray3.1011-98[»]
2Y17X-ray3.1011-98[»]
2Y19X-ray3.1011-98[»]
3FINelectron microscopy6.4018-96[»]
3HUXX-ray3.1011-98[»]
3HUZX-ray3.1011-98[»]
3I8FX-ray3.10Z1-98[»]
3I8IX-ray3.10Z1-98[»]
3I9CX-ray3.50Z1-98[»]
3I9EX-ray3.50Z1-98[»]
3KIRX-ray3.3011-98[»]
3KITX-ray3.3011-98[»]
3KIWX-ray3.6011-98[»]
3KIYX-ray3.6011-98[»]
3KNIX-ray3.0011-98[»]
3KNKX-ray3.0011-98[»]
3KNMX-ray3.4511-98[»]
3KNOX-ray3.4511-98[»]
3OH5X-ray3.0011-98[»]
3OH7X-ray3.0011-98[»]
3OHJX-ray3.0011-98[»]
3OHKX-ray3.0011-98[»]
3OHZX-ray3.0011-98[»]
3OI1X-ray3.0011-98[»]
3OI3X-ray3.1011-98[»]
3OI5X-ray3.1011-98[»]
3TVEX-ray3.10Z2-98[»]
3TVHX-ray3.10Z2-98[»]
3UXQX-ray3.2011-98[»]
3UXRX-ray3.2011-98[»]
3UYEX-ray3.00Z1-98[»]
3UYGX-ray3.00Z1-98[»]
3UZ1X-ray3.30Z1-98[»]
3UZ2X-ray3.30Z1-98[»]
3UZ8X-ray3.00Z1-98[»]
3UZ9X-ray3.00Z1-98[»]
3UZFX-ray3.30Z1-98[»]
3UZHX-ray3.30Z1-98[»]
3UZKX-ray3.30Z1-98[»]
3UZNX-ray3.30Z1-98[»]
3V23X-ray3.0011-98[»]
3V25X-ray3.0011-98[»]
3V27X-ray3.1011-98[»]
3V29X-ray3.1011-98[»]
3V2DX-ray2.7011-98[»]
3V2FX-ray2.7011-98[»]
3ZVPX-ray3.8011-98[»]
4ABSX-ray3.1011-98[»]
4DHAX-ray3.2011-98[»]
4DHCX-ray3.2011-98[»]
4G5LX-ray3.30Z1-98[»]
4G5NX-ray3.30Z1-98[»]
4G5UX-ray3.10Z1-98[»]
4G5WX-ray3.10Z1-98[»]
ProteinModelPortalP60494.
SMRP60494. Positions 8-95.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA0042.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD69865; BAD69865; BAD69865.
GeneID3168111.
KEGGttj:TTHA0042.
PATRIC23955013. VBITheThe93045_0040.

Phylogenomic databases

eggNOGCOG0227.
HOGENOMHOG000040463.
KOK02902.
OMAAKREGGV.
ProtClustDBPRK00359.

Family and domain databases

HAMAPMF_00373. Ribosomal_L28.
InterProIPR001383. Ribosomal_L28.
[Graphical view]
PfamPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsTIGR00009. L28. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP60494.

Entry information

Entry nameRL28_THET8
AccessionPrimary (citable) accession number: P60494
Secondary accession number(s): Q5SMA1
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: May 1, 2013
This is version 71 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents