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P60493

- RL27_THET8

UniProt

P60493 - RL27_THET8

Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Found on the solvent side of the large subunit.

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1824-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L27
    Gene namesi
    Name:rpmA
    Ordered Locus Names:TTHA1782
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 858450S ribosomal protein L27PRO_0000181194Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA1782.

    Structurei

    Secondary structure

    1
    85
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi22 – 254
    Beta strandi36 – 394
    Beta strandi44 – 474
    Beta strandi51 – 533
    Turni55 – 573
    Beta strandi59 – 7113
    Helixi73 – 753
    Beta strandi77 – 837

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1V8QX-ray2.80A/B/C/D1-85[»]
    1YL3X-ray5.5031-77[»]
    2HGJX-ray5.00Z1-85[»]
    2HGQX-ray5.50Z1-85[»]
    2HGUX-ray4.51Z1-85[»]
    2J01X-ray2.8002-85[»]
    2J03X-ray2.8002-85[»]
    2V47X-ray3.5002-85[»]
    2V49X-ray3.5002-85[»]
    2WDIX-ray3.3001-85[»]
    2WDJX-ray3.3001-85[»]
    2WDLX-ray3.5001-85[»]
    2WDNX-ray3.5001-85[»]
    2WH2X-ray3.4501-85[»]
    2WH4X-ray3.4501-85[»]
    2WRJX-ray3.6001-85[»]
    2WRLX-ray3.6001-85[»]
    2WROX-ray3.6001-85[»]
    2WRRX-ray3.6001-85[»]
    2X9SX-ray3.1001-85[»]
    2X9UX-ray3.1001-85[»]
    2XG0X-ray3.2001-85[»]
    2XG2X-ray3.2001-85[»]
    2XQEX-ray3.1001-85[»]
    2XTGelectron microscopy7.8001-85[»]
    2XUXelectron microscopy7.6001-85[»]
    2Y0VX-ray3.1001-85[»]
    2Y0XX-ray3.1001-85[»]
    2Y0ZX-ray3.1001-85[»]
    2Y11X-ray3.1001-85[»]
    2Y13X-ray3.1001-85[»]
    2Y15X-ray3.1001-85[»]
    2Y17X-ray3.1001-85[»]
    2Y19X-ray3.1001-85[»]
    3FINelectron microscopy6.4001-85[»]
    3HUXX-ray3.1001-85[»]
    3HUZX-ray3.1001-85[»]
    3I8FX-ray3.1031-85[»]
    3I8IX-ray3.1031-85[»]
    3I9CX-ray3.5031-85[»]
    3I9EX-ray3.5031-85[»]
    3KIRX-ray3.3001-85[»]
    3KITX-ray3.3001-85[»]
    3KIWX-ray3.6001-85[»]
    3KIYX-ray3.6001-85[»]
    3KNIX-ray3.0001-85[»]
    3KNKX-ray3.0001-85[»]
    3KNMX-ray3.4501-85[»]
    3KNOX-ray3.4501-85[»]
    3OH5X-ray3.0001-85[»]
    3OH7X-ray3.0001-85[»]
    3OHJX-ray3.0001-85[»]
    3OHKX-ray3.0001-85[»]
    3OHZX-ray3.0001-85[»]
    3OI1X-ray3.0001-85[»]
    3OI3X-ray3.1001-85[»]
    3OI5X-ray3.1001-85[»]
    3TVEX-ray3.10310-85[»]
    3TVHX-ray3.1039-85[»]
    3UXQX-ray3.2001-85[»]
    3UXRX-ray3.2001-85[»]
    3UYEX-ray3.0031-85[»]
    3UYGX-ray3.0031-85[»]
    3UZ1X-ray3.3031-85[»]
    3UZ2X-ray3.3031-85[»]
    3UZ8X-ray3.0031-85[»]
    3UZ9X-ray3.0031-85[»]
    3UZFX-ray3.3031-85[»]
    3UZHX-ray3.3031-85[»]
    3UZKX-ray3.3031-85[»]
    3UZNX-ray3.3031-85[»]
    3V23X-ray3.0001-85[»]
    3V25X-ray3.0001-85[»]
    3V27X-ray3.1001-85[»]
    3V29X-ray3.1001-85[»]
    3V2DX-ray2.7001-85[»]
    3V2FX-ray2.7001-85[»]
    3V6WX-ray3.9001-85[»]
    3V6XX-ray3.9001-85[»]
    3ZN9X-ray3.1001-85[»]
    3ZNEX-ray3.1001-85[»]
    3ZVPX-ray3.8001-85[»]
    4ABSX-ray3.1001-85[»]
    4B8GX-ray3.7001-85[»]
    4B8IX-ray3.7001-85[»]
    4BTDX-ray2.9502-85[»]
    4BYCX-ray3.3501-85[»]
    4BYEX-ray3.3501-85[»]
    4DHAX-ray3.2001-85[»]
    4DHCX-ray3.2001-85[»]
    4EJBX-ray3.5201-85[»]
    4EJCX-ray3.5201-85[»]
    4G5LX-ray3.3031-85[»]
    4G5NX-ray3.3031-85[»]
    4G5UX-ray3.1031-85[»]
    4G5WX-ray3.1031-85[»]
    4JUXX-ray2.8601-85[»]
    4K0MX-ray3.3002-85[»]
    4K0QX-ray3.3002-85[»]
    4NVVX-ray3.0001-85[»]
    4NVXX-ray3.0001-85[»]
    4NVZX-ray3.1001-85[»]
    4NW1X-ray3.1001-85[»]
    ProteinModelPortaliP60493.
    SMRiP60493. Positions 1-85.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP60493.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L27P family.Curated

    Phylogenomic databases

    eggNOGiCOG0211.
    HOGENOMiHOG000111610.
    KOiK02899.
    OMAiKGPLNRK.
    OrthoDBiEOG6N94H6.
    PhylomeDBiP60493.

    Family and domain databases

    HAMAPiMF_00539. Ribosomal_L27.
    InterProiIPR001684. Ribosomal_L27.
    IPR018261. Ribosomal_L27_CS.
    [Graphical view]
    PANTHERiPTHR15893. PTHR15893. 1 hit.
    PfamiPF01016. Ribosomal_L27. 1 hit.
    [Graphical view]
    PRINTSiPR00063. RIBOSOMALL27.
    ProDomiPD003114. Ribosomal_L27. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    TIGRFAMsiTIGR00062. L27. 1 hit.
    PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P60493-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN   50
    VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA 85
    Length:85
    Mass (Da):9,508
    Last modified:January 23, 2007 - v3
    Checksum:i7F046822769C8728
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti20 – 201R → D AA sequence (PubMed:11154066)Curated
    Sequence conflicti26 – 261Y → S AA sequence (PubMed:11154066)Curated

    Mass spectrometryi

    Molecular mass is 9378 Da from positions 2 - 85. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71605.1.
    RefSeqiYP_145048.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71605; BAD71605; BAD71605.
    GeneIDi3168387.
    KEGGittj:TTHA1782.
    PATRICi23958525. VBITheThe93045_1752.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71605.1 .
    RefSeqi YP_145048.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1V8Q X-ray 2.80 A/B/C/D 1-85 [» ]
    1YL3 X-ray 5.50 3 1-77 [» ]
    2HGJ X-ray 5.00 Z 1-85 [» ]
    2HGQ X-ray 5.50 Z 1-85 [» ]
    2HGU X-ray 4.51 Z 1-85 [» ]
    2J01 X-ray 2.80 0 2-85 [» ]
    2J03 X-ray 2.80 0 2-85 [» ]
    2V47 X-ray 3.50 0 2-85 [» ]
    2V49 X-ray 3.50 0 2-85 [» ]
    2WDI X-ray 3.30 0 1-85 [» ]
    2WDJ X-ray 3.30 0 1-85 [» ]
    2WDL X-ray 3.50 0 1-85 [» ]
    2WDN X-ray 3.50 0 1-85 [» ]
    2WH2 X-ray 3.45 0 1-85 [» ]
    2WH4 X-ray 3.45 0 1-85 [» ]
    2WRJ X-ray 3.60 0 1-85 [» ]
    2WRL X-ray 3.60 0 1-85 [» ]
    2WRO X-ray 3.60 0 1-85 [» ]
    2WRR X-ray 3.60 0 1-85 [» ]
    2X9S X-ray 3.10 0 1-85 [» ]
    2X9U X-ray 3.10 0 1-85 [» ]
    2XG0 X-ray 3.20 0 1-85 [» ]
    2XG2 X-ray 3.20 0 1-85 [» ]
    2XQE X-ray 3.10 0 1-85 [» ]
    2XTG electron microscopy 7.80 0 1-85 [» ]
    2XUX electron microscopy 7.60 0 1-85 [» ]
    2Y0V X-ray 3.10 0 1-85 [» ]
    2Y0X X-ray 3.10 0 1-85 [» ]
    2Y0Z X-ray 3.10 0 1-85 [» ]
    2Y11 X-ray 3.10 0 1-85 [» ]
    2Y13 X-ray 3.10 0 1-85 [» ]
    2Y15 X-ray 3.10 0 1-85 [» ]
    2Y17 X-ray 3.10 0 1-85 [» ]
    2Y19 X-ray 3.10 0 1-85 [» ]
    3FIN electron microscopy 6.40 0 1-85 [» ]
    3HUX X-ray 3.10 0 1-85 [» ]
    3HUZ X-ray 3.10 0 1-85 [» ]
    3I8F X-ray 3.10 3 1-85 [» ]
    3I8I X-ray 3.10 3 1-85 [» ]
    3I9C X-ray 3.50 3 1-85 [» ]
    3I9E X-ray 3.50 3 1-85 [» ]
    3KIR X-ray 3.30 0 1-85 [» ]
    3KIT X-ray 3.30 0 1-85 [» ]
    3KIW X-ray 3.60 0 1-85 [» ]
    3KIY X-ray 3.60 0 1-85 [» ]
    3KNI X-ray 3.00 0 1-85 [» ]
    3KNK X-ray 3.00 0 1-85 [» ]
    3KNM X-ray 3.45 0 1-85 [» ]
    3KNO X-ray 3.45 0 1-85 [» ]
    3OH5 X-ray 3.00 0 1-85 [» ]
    3OH7 X-ray 3.00 0 1-85 [» ]
    3OHJ X-ray 3.00 0 1-85 [» ]
    3OHK X-ray 3.00 0 1-85 [» ]
    3OHZ X-ray 3.00 0 1-85 [» ]
    3OI1 X-ray 3.00 0 1-85 [» ]
    3OI3 X-ray 3.10 0 1-85 [» ]
    3OI5 X-ray 3.10 0 1-85 [» ]
    3TVE X-ray 3.10 3 10-85 [» ]
    3TVH X-ray 3.10 3 9-85 [» ]
    3UXQ X-ray 3.20 0 1-85 [» ]
    3UXR X-ray 3.20 0 1-85 [» ]
    3UYE X-ray 3.00 3 1-85 [» ]
    3UYG X-ray 3.00 3 1-85 [» ]
    3UZ1 X-ray 3.30 3 1-85 [» ]
    3UZ2 X-ray 3.30 3 1-85 [» ]
    3UZ8 X-ray 3.00 3 1-85 [» ]
    3UZ9 X-ray 3.00 3 1-85 [» ]
    3UZF X-ray 3.30 3 1-85 [» ]
    3UZH X-ray 3.30 3 1-85 [» ]
    3UZK X-ray 3.30 3 1-85 [» ]
    3UZN X-ray 3.30 3 1-85 [» ]
    3V23 X-ray 3.00 0 1-85 [» ]
    3V25 X-ray 3.00 0 1-85 [» ]
    3V27 X-ray 3.10 0 1-85 [» ]
    3V29 X-ray 3.10 0 1-85 [» ]
    3V2D X-ray 2.70 0 1-85 [» ]
    3V2F X-ray 2.70 0 1-85 [» ]
    3V6W X-ray 3.90 0 1-85 [» ]
    3V6X X-ray 3.90 0 1-85 [» ]
    3ZN9 X-ray 3.10 0 1-85 [» ]
    3ZNE X-ray 3.10 0 1-85 [» ]
    3ZVP X-ray 3.80 0 1-85 [» ]
    4ABS X-ray 3.10 0 1-85 [» ]
    4B8G X-ray 3.70 0 1-85 [» ]
    4B8I X-ray 3.70 0 1-85 [» ]
    4BTD X-ray 2.95 0 2-85 [» ]
    4BYC X-ray 3.35 0 1-85 [» ]
    4BYE X-ray 3.35 0 1-85 [» ]
    4DHA X-ray 3.20 0 1-85 [» ]
    4DHC X-ray 3.20 0 1-85 [» ]
    4EJB X-ray 3.52 0 1-85 [» ]
    4EJC X-ray 3.52 0 1-85 [» ]
    4G5L X-ray 3.30 3 1-85 [» ]
    4G5N X-ray 3.30 3 1-85 [» ]
    4G5U X-ray 3.10 3 1-85 [» ]
    4G5W X-ray 3.10 3 1-85 [» ]
    4JUX X-ray 2.86 0 1-85 [» ]
    4K0M X-ray 3.30 0 2-85 [» ]
    4K0Q X-ray 3.30 0 2-85 [» ]
    4NVV X-ray 3.00 0 1-85 [» ]
    4NVX X-ray 3.00 0 1-85 [» ]
    4NVZ X-ray 3.10 0 1-85 [» ]
    4NW1 X-ray 3.10 0 1-85 [» ]
    ProteinModelPortali P60493.
    SMRi P60493. Positions 1-85.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1782.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71605 ; BAD71605 ; BAD71605 .
    GeneIDi 3168387.
    KEGGi ttj:TTHA1782.
    PATRICi 23958525. VBITheThe93045_1752.

    Phylogenomic databases

    eggNOGi COG0211.
    HOGENOMi HOG000111610.
    KOi K02899.
    OMAi KGPLNRK.
    OrthoDBi EOG6N94H6.
    PhylomeDBi P60493.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1824-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P60493.

    Family and domain databases

    HAMAPi MF_00539. Ribosomal_L27.
    InterProi IPR001684. Ribosomal_L27.
    IPR018261. Ribosomal_L27_CS.
    [Graphical view ]
    PANTHERi PTHR15893. PTHR15893. 1 hit.
    Pfami PF01016. Ribosomal_L27. 1 hit.
    [Graphical view ]
    PRINTSi PR00063. RIBOSOMALL27.
    ProDomi PD003114. Ribosomal_L27. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    TIGRFAMsi TIGR00062. L27. 1 hit.
    PROSITEi PS00831. RIBOSOMAL_L27. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-26.
    3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    4. Cited for: STRUCTURE OF THE RIBOSOME.
    5. "Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8."
      Wang H., Takemoto C.H., Murayama K., Sakai H., Tatsuguchi A., Terada T., Shirouzu M., Kuramitsu S., Yokoyama S.
      Protein Sci. 13:2806-2810(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).

    Entry informationi

    Entry nameiRL27_THET8
    AccessioniPrimary (citable) accession number: P60493
    Secondary accession number(s): P84123, Q5SHE8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 1, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 91 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3