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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1824-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27
Gene namesi
Name:rpmA
Ordered Locus Names:TTHA1782
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 858450S ribosomal protein L27PRO_0000181194Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1782.

Structurei

Secondary structure

1
85
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi36 – 394Combined sources
Beta strandi44 – 474Combined sources
Beta strandi51 – 533Combined sources
Turni55 – 573Combined sources
Beta strandi59 – 7113Combined sources
Helixi73 – 753Combined sources
Beta strandi77 – 837Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V8QX-ray2.80A/B/C/D1-85[»]
1VVJX-ray3.44R0/Y01-85[»]
1VY4X-ray2.60B0/D01-85[»]
1VY5X-ray2.55B0/D01-85[»]
1VY6X-ray2.90B0/D01-85[»]
1VY7X-ray2.80B0/D01-85[»]
4L47X-ray3.22R0/Y01-85[»]
4L71X-ray3.90R0/Y01-85[»]
4LELX-ray3.90R0/Y01-85[»]
4LFZX-ray3.92R0/Y01-85[»]
4LNTX-ray2.94R0/Y01-85[»]
4LSKX-ray3.48R0/Y01-85[»]
4LT8X-ray3.14R0/Y01-85[»]
4P6FX-ray3.60R0/Y01-85[»]
4P70X-ray3.68R0/Y01-85[»]
4V4PX-ray5.5031-77[»]
4V4XX-ray5.00BZ1-85[»]
4V4YX-ray5.50BZ1-85[»]
4V4ZX-ray4.51BZ1-85[»]
4V51X-ray2.80B0/D02-85[»]
4V5AX-ray3.50B0/D02-85[»]
4V5CX-ray3.30B0/D01-85[»]
4V5DX-ray3.50B0/D01-85[»]
4V5EX-ray3.45B0/D01-85[»]
4V5FX-ray3.60B0/D01-85[»]
4V5GX-ray3.60B0/D01-85[»]
4V5JX-ray3.10B0/D01-85[»]
4V5KX-ray3.20B0/D01-85[»]
4V5LX-ray3.10B01-85[»]
4V5Melectron microscopy7.80B01-85[»]
4V5Nelectron microscopy7.60B01-85[»]
4V5PX-ray3.10B0/D01-85[»]
4V5QX-ray3.10B0/D01-85[»]
4V5RX-ray3.10B0/D01-85[»]
4V5SX-ray3.10B0/D01-85[»]
4V68electron microscopy6.40B01-85[»]
4V6AX-ray3.10B0/D01-85[»]
4V6FX-ray3.10A3/D31-85[»]
4V6GX-ray3.50B3/D31-85[»]
4V7JX-ray3.30A0/B01-85[»]
4V7KX-ray3.60A0/B01-85[»]
4V7LX-ray3.00B0/D01-85[»]
4V7MX-ray3.45B0/D01-85[»]
4V7WX-ray3.00B0/D01-85[»]
4V7XX-ray3.00B0/D01-85[»]
4V7YX-ray3.00B0/D01-85[»]
4V7ZX-ray3.10B0/D01-85[»]
4V87X-ray3.10A3/D39-85[»]
4V8AX-ray3.20A0/B01-85[»]
4V8BX-ray3.00B3/D31-85[»]
4V8CX-ray3.30A3/B31-85[»]
4V8DX-ray3.00B3/D31-85[»]
4V8EX-ray3.30A3/C31-85[»]
4V8FX-ray3.30A3/D31-85[»]
4V8GX-ray3.00B0/D01-85[»]
4V8HX-ray3.10B0/D01-85[»]
4V8IX-ray2.70B0/D01-85[»]
4V8JX-ray3.90B0/D01-85[»]
4V8NX-ray3.10B0/D01-85[»]
4V8OX-ray3.80B01-85[»]
4V8QX-ray3.10A01-85[»]
4V8UX-ray3.70B0/D01-85[»]
4V8XX-ray3.35B0/D01-85[»]
4V90X-ray2.95B02-85[»]
4V95X-ray3.20B0/D01-85[»]
4V97X-ray3.52B0/D01-85[»]
4V9AX-ray3.30B3/D31-85[»]
4V9BX-ray3.10B3/D31-85[»]
4V9HX-ray2.86B01-85[»]
4V9IX-ray3.30B0/D02-85[»]
4V9RX-ray3.00B0/D01-85[»]
4V9SX-ray3.10B0/D01-85[»]
4W2EX-ray2.9001-85[»]
4W2FX-ray2.40B0/D01-85[»]
4W2GX-ray2.55B0/D01-85[»]
4W2HX-ray2.70B0/D01-85[»]
4W2IX-ray2.70B0/D01-85[»]
4WPOX-ray2.80A0/C01-85[»]
4WQFX-ray2.80A0/C01-85[»]
4WQUX-ray2.80A0/C01-85[»]
4WQYX-ray2.80A0/C01-85[»]
4WWEX-ray3.40a2-85[»]
4WWTX-ray3.40a2-85[»]
4Y4OX-ray2.3010/201-85[»]
4Y4PX-ray2.5010/201-85[»]
ProteinModelPortaliP60493.
SMRiP60493. Positions 1-85.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60493.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L27P family.Curated

Phylogenomic databases

eggNOGiCOG0211.
HOGENOMiHOG000111610.
KOiK02899.
OMAiKDHTLHA.
OrthoDBiEOG6N94H6.
PhylomeDBiP60493.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN
60 70 80
VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA
Length:85
Mass (Da):9,508
Last modified:January 23, 2007 - v3
Checksum:i7F046822769C8728
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti20 – 201R → D AA sequence (PubMed:11154066).Curated
Sequence conflicti26 – 261Y → S AA sequence (PubMed:11154066).Curated

Mass spectrometryi

Molecular mass is 9378 Da from positions 2 - 85. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71605.1.
RefSeqiWP_011228914.1. NC_006461.1.
YP_145048.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71605; BAD71605; BAD71605.
GeneIDi3168387.
KEGGittj:TTHA1782.
PATRICi23958525. VBITheThe93045_1752.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71605.1.
RefSeqiWP_011228914.1. NC_006461.1.
YP_145048.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V8QX-ray2.80A/B/C/D1-85[»]
1VVJX-ray3.44R0/Y01-85[»]
1VY4X-ray2.60B0/D01-85[»]
1VY5X-ray2.55B0/D01-85[»]
1VY6X-ray2.90B0/D01-85[»]
1VY7X-ray2.80B0/D01-85[»]
4L47X-ray3.22R0/Y01-85[»]
4L71X-ray3.90R0/Y01-85[»]
4LELX-ray3.90R0/Y01-85[»]
4LFZX-ray3.92R0/Y01-85[»]
4LNTX-ray2.94R0/Y01-85[»]
4LSKX-ray3.48R0/Y01-85[»]
4LT8X-ray3.14R0/Y01-85[»]
4P6FX-ray3.60R0/Y01-85[»]
4P70X-ray3.68R0/Y01-85[»]
4V4PX-ray5.5031-77[»]
4V4XX-ray5.00BZ1-85[»]
4V4YX-ray5.50BZ1-85[»]
4V4ZX-ray4.51BZ1-85[»]
4V51X-ray2.80B0/D02-85[»]
4V5AX-ray3.50B0/D02-85[»]
4V5CX-ray3.30B0/D01-85[»]
4V5DX-ray3.50B0/D01-85[»]
4V5EX-ray3.45B0/D01-85[»]
4V5FX-ray3.60B0/D01-85[»]
4V5GX-ray3.60B0/D01-85[»]
4V5JX-ray3.10B0/D01-85[»]
4V5KX-ray3.20B0/D01-85[»]
4V5LX-ray3.10B01-85[»]
4V5Melectron microscopy7.80B01-85[»]
4V5Nelectron microscopy7.60B01-85[»]
4V5PX-ray3.10B0/D01-85[»]
4V5QX-ray3.10B0/D01-85[»]
4V5RX-ray3.10B0/D01-85[»]
4V5SX-ray3.10B0/D01-85[»]
4V68electron microscopy6.40B01-85[»]
4V6AX-ray3.10B0/D01-85[»]
4V6FX-ray3.10A3/D31-85[»]
4V6GX-ray3.50B3/D31-85[»]
4V7JX-ray3.30A0/B01-85[»]
4V7KX-ray3.60A0/B01-85[»]
4V7LX-ray3.00B0/D01-85[»]
4V7MX-ray3.45B0/D01-85[»]
4V7WX-ray3.00B0/D01-85[»]
4V7XX-ray3.00B0/D01-85[»]
4V7YX-ray3.00B0/D01-85[»]
4V7ZX-ray3.10B0/D01-85[»]
4V87X-ray3.10A3/D39-85[»]
4V8AX-ray3.20A0/B01-85[»]
4V8BX-ray3.00B3/D31-85[»]
4V8CX-ray3.30A3/B31-85[»]
4V8DX-ray3.00B3/D31-85[»]
4V8EX-ray3.30A3/C31-85[»]
4V8FX-ray3.30A3/D31-85[»]
4V8GX-ray3.00B0/D01-85[»]
4V8HX-ray3.10B0/D01-85[»]
4V8IX-ray2.70B0/D01-85[»]
4V8JX-ray3.90B0/D01-85[»]
4V8NX-ray3.10B0/D01-85[»]
4V8OX-ray3.80B01-85[»]
4V8QX-ray3.10A01-85[»]
4V8UX-ray3.70B0/D01-85[»]
4V8XX-ray3.35B0/D01-85[»]
4V90X-ray2.95B02-85[»]
4V95X-ray3.20B0/D01-85[»]
4V97X-ray3.52B0/D01-85[»]
4V9AX-ray3.30B3/D31-85[»]
4V9BX-ray3.10B3/D31-85[»]
4V9HX-ray2.86B01-85[»]
4V9IX-ray3.30B0/D02-85[»]
4V9RX-ray3.00B0/D01-85[»]
4V9SX-ray3.10B0/D01-85[»]
4W2EX-ray2.9001-85[»]
4W2FX-ray2.40B0/D01-85[»]
4W2GX-ray2.55B0/D01-85[»]
4W2HX-ray2.70B0/D01-85[»]
4W2IX-ray2.70B0/D01-85[»]
4WPOX-ray2.80A0/C01-85[»]
4WQFX-ray2.80A0/C01-85[»]
4WQUX-ray2.80A0/C01-85[»]
4WQYX-ray2.80A0/C01-85[»]
4WWEX-ray3.40a2-85[»]
4WWTX-ray3.40a2-85[»]
4Y4OX-ray2.3010/201-85[»]
4Y4PX-ray2.5010/201-85[»]
ProteinModelPortaliP60493.
SMRiP60493. Positions 1-85.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1782.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71605; BAD71605; BAD71605.
GeneIDi3168387.
KEGGittj:TTHA1782.
PATRICi23958525. VBITheThe93045_1752.

Phylogenomic databases

eggNOGiCOG0211.
HOGENOMiHOG000111610.
KOiK02899.
OMAiKDHTLHA.
OrthoDBiEOG6N94H6.
PhylomeDBiP60493.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1824-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP60493.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-26.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. Cited for: STRUCTURE OF THE RIBOSOME.
  5. "Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8."
    Wang H., Takemoto C.H., Murayama K., Sakai H., Tatsuguchi A., Terada T., Shirouzu M., Kuramitsu S., Yokoyama S.
    Protein Sci. 13:2806-2810(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).

Entry informationi

Entry nameiRL27_THET8
AccessioniPrimary (citable) accession number: P60493
Secondary accession number(s): P84123, Q5SHE8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: May 27, 2015
This is version 98 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.