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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27
Gene namesi
Name:rpmA
Ordered Locus Names:TTHA1782
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001811942 – 8550S ribosomal protein L27Add BLAST84

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1782.

Structurei

Secondary structure

185
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi36 – 39Combined sources4
Beta strandi44 – 47Combined sources4
Beta strandi51 – 53Combined sources3
Beta strandi59 – 71Combined sources13
Helixi73 – 75Combined sources3
Beta strandi77 – 83Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1V8QX-ray2.80A/B/C/D1-85[»]
1VVJX-ray3.44R0/Y01-85[»]
1VY4X-ray2.60B0/D01-85[»]
1VY5X-ray2.55B0/D01-85[»]
1VY6X-ray2.90B0/D01-85[»]
1VY7X-ray2.80B0/D01-85[»]
4L47X-ray3.22R0/Y01-85[»]
4L71X-ray3.90R0/Y01-85[»]
4LELX-ray3.90R0/Y01-85[»]
4LFZX-ray3.92R0/Y01-85[»]
4LNTX-ray2.94R0/Y01-85[»]
4LSKX-ray3.48R0/Y01-85[»]
4LT8X-ray3.14R0/Y01-85[»]
4P6FX-ray3.60R0/Y01-85[»]
4P70X-ray3.68R0/Y01-85[»]
4TUAX-ray3.60R0/Y01-85[»]
4TUBX-ray3.60R0/Y01-85[»]
4TUCX-ray3.60R0/Y01-85[»]
4TUDX-ray3.60R0/Y01-85[»]
4TUEX-ray3.50R0/Y01-85[»]
4V4PX-ray5.5031-77[»]
4V4XX-ray5.00BZ1-85[»]
4V4YX-ray5.50BZ1-85[»]
4V4ZX-ray4.51BZ1-85[»]
4V51X-ray2.80B0/D02-85[»]
4V5AX-ray3.50B0/D02-85[»]
4V5CX-ray3.30B0/D01-85[»]
4V5DX-ray3.50B0/D01-85[»]
4V5EX-ray3.45B0/D01-85[»]
4V5FX-ray3.60B0/D01-85[»]
4V5GX-ray3.60B0/D01-85[»]
4V5JX-ray3.10B0/D01-85[»]
4V5KX-ray3.20B0/D01-85[»]
4V5LX-ray3.10B01-85[»]
4V5Melectron microscopy7.80B01-85[»]
4V5Nelectron microscopy7.60B01-85[»]
4V5PX-ray3.10B0/D01-85[»]
4V5QX-ray3.10B0/D01-85[»]
4V5RX-ray3.10B0/D01-85[»]
4V5SX-ray3.10B0/D01-85[»]
4V68electron microscopy6.40B01-85[»]
4V6AX-ray3.10B0/D01-85[»]
4V6FX-ray3.10A3/D31-85[»]
4V6GX-ray3.50B3/D31-85[»]
4V7JX-ray3.30A0/B01-85[»]
4V7KX-ray3.60A0/B01-85[»]
4V7LX-ray3.00B0/D01-85[»]
4V7MX-ray3.45B0/D01-85[»]
4V7WX-ray3.00B0/D01-85[»]
4V7XX-ray3.00B0/D01-85[»]
4V7YX-ray3.00B0/D01-85[»]
4V7ZX-ray3.10B0/D01-85[»]
4V87X-ray3.10A3/D39-85[»]
4V8AX-ray3.20A0/B01-85[»]
4V8BX-ray3.00B3/D31-85[»]
4V8CX-ray3.30A3/B31-85[»]
4V8DX-ray3.00B3/D31-85[»]
4V8EX-ray3.30A3/C31-85[»]
4V8FX-ray3.30A3/D31-85[»]
4V8GX-ray3.00B0/D01-85[»]
4V8HX-ray3.10B0/D01-85[»]
4V8IX-ray2.70B0/D01-85[»]
4V8JX-ray3.90B0/D01-85[»]
4V8NX-ray3.10B0/D01-85[»]
4V8OX-ray3.80B01-85[»]
4V8QX-ray3.10A01-85[»]
4V8UX-ray3.70B0/D01-85[»]
4V8XX-ray3.35B0/D01-85[»]
4V90X-ray2.95B02-85[»]
4V95X-ray3.20B0/D01-85[»]
4V97X-ray3.52B0/D01-85[»]
4V9AX-ray3.30B3/D31-85[»]
4V9BX-ray3.10B3/D31-85[»]
4V9HX-ray2.86B01-85[»]
4V9IX-ray3.30B0/D02-85[»]
4V9RX-ray3.00B0/D01-85[»]
4V9SX-ray3.10B0/D01-85[»]
4W2EX-ray2.9001-85[»]
4W2FX-ray2.40B0/D01-85[»]
4W2GX-ray2.55B0/D01-85[»]
4W2HX-ray2.70B0/D01-85[»]
4W2IX-ray2.70B0/D01-85[»]
4W4GX-ray3.30R0/Y01-85[»]
4WPOX-ray2.80A0/C01-85[»]
4WQ1X-ray3.10E5/I81-85[»]
4WQFX-ray2.80A0/C01-85[»]
4WQRX-ray3.15E5/I81-85[»]
4WQUX-ray2.80A0/C01-85[»]
4WQYX-ray2.80A0/C01-85[»]
4WR6X-ray3.05E5/I81-85[»]
4WRAX-ray3.05E5/I81-85[»]
4WROX-ray3.05I81-85[»]
4WSDX-ray2.95E5/I81-85[»]
4WSMX-ray3.30E5/I81-85[»]
4WT1X-ray3.05E5/I81-85[»]
4WT8X-ray3.40Ca/Da2-85[»]
4WU1X-ray3.20E5/I81-85[»]
4WZDX-ray3.10E5/I81-85[»]
4WZOX-ray3.30E5/I81-85[»]
4Y4OX-ray2.3010/201-85[»]
4Y4PX-ray2.5010/201-85[»]
4YPBX-ray3.40R0/Y01-85[»]
4YZVX-ray3.10R0/Y01-85[»]
4Z3SX-ray2.6510/201-85[»]
4Z8CX-ray2.9010/201-85[»]
4ZERX-ray3.1010/208-84[»]
4ZSNX-ray3.60R0/Y01-85[»]
5A9Zelectron microscopy4.70AX1-85[»]
5AA0electron microscopy5.00AX1-85[»]
5CZPX-ray3.30R0/Y01-85[»]
5D8BX-ray3.63QB/U1-85[»]
5DFEX-ray3.10R0/Y01-85[»]
5DOXX-ray3.1010/201-85[»]
5DOYX-ray2.6010/201-85[»]
5E7KX-ray3.20E5/I81-85[»]
5E81X-ray2.95E5/I81-85[»]
5EL4X-ray3.15E5/I81-85[»]
5EL5X-ray3.15E5/I81-85[»]
5EL6X-ray3.10E5/I81-85[»]
5EL7X-ray3.15E5/I81-85[»]
5F8KX-ray2.8010/208-84[»]
5FDUX-ray2.9010/208-84[»]
5FDVX-ray2.8010/208-84[»]
5HAUX-ray3.001Y/2Y1-85[»]
5HCPX-ray2.8910/201-85[»]
5HCQX-ray2.8010/201-85[»]
5HCRX-ray2.8010/201-85[»]
5HD1X-ray2.7010/201-85[»]
5IB7X-ray2.99E5/I81-85[»]
5IB8X-ray3.13E5/I81-85[»]
5IBBX-ray2.96E5/I81-85[»]
5IMQelectron microscopy3.80s1-85[»]
5IMRelectron microscopy-s1-85[»]
5J30X-ray3.20R0/Y01-85[»]
5J3CX-ray3.04R0/Y01-85[»]
5J4BX-ray2.6010/201-85[»]
5J4CX-ray2.8010/201-85[»]
5J8BX-ray2.6001-85[»]
ProteinModelPortaliP60493.
SMRiP60493.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60493.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
HOGENOMiHOG000111610.
KOiK02899.
OMAiKDHTLHA.
PhylomeDBiP60493.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27. 1 hit.
InterProiView protein in InterPro
IPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiView protein in Pfam
PF01016. Ribosomal_L27. 1 hit.
PRINTSiPR00063. RIBOSOMALL27.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003114. Ribosomal_L27. 1 hit.
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiView protein in PROSITE
PS00831. RIBOSOMAL_L27. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN
60 70 80
VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA
Length:85
Mass (Da):9,508
Last modified:January 23, 2007 - v3
Checksum:i7F046822769C8728
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti20R → D AA sequence (PubMed:11154066).Curated1
Sequence conflicti26Y → S AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 9378 Da from positions 2 - 85. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71605.1.
RefSeqiWP_011228914.1. NC_006461.1.
YP_145048.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71605; BAD71605; BAD71605.
GeneIDi3168387.
KEGGittj:TTHA1782.
PATRICifig|300852.9.peg.1752.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL27_THET8
AccessioniPrimary (citable) accession number: P60493
Secondary accession number(s): P84123, Q5SHE8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 117 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families