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P60493 (RL27_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 88. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L27
Gene names
Name:rpmA
Ordered Locus Names:TTHA1782
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length85 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Found on the solvent side of the large subunit. HAMAP-Rule MF_00539

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L27P family.

Mass spectrometry

Molecular mass is 9378 Da from positions 2 - 85. Determined by MALDI. Ref.3

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2
Chain2 – 858450S ribosomal protein L27 HAMAP-Rule MF_00539
PRO_0000181194

Experimental info

Sequence conflict201R → D AA sequence Ref.2
Sequence conflict261Y → S AA sequence Ref.2

Secondary structure

................. 85
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P60493 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 7F046822769C8728

FASTA859,508
        10         20         30         40         50         60 
MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN VGMGRDFTLF 

        70         80 
ALVDGVVEFQ DRGRLGRYVH VRPLA 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-26.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE OF THE RIBOSOME.
[5]"Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8."
Wang H., Takemoto C.H., Murayama K., Sakai H., Tatsuguchi A., Terada T., Shirouzu M., Kuramitsu S., Yokoyama S.
Protein Sci. 13:2806-2810(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71605.1.
RefSeqYP_145048.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1V8QX-ray2.80A/B/C/D1-85[»]
1YL3X-ray5.5031-65[»]
2HGJX-ray5.00Z1-85[»]
2HGQX-ray5.50Z1-85[»]
2HGUX-ray4.51Z1-85[»]
2J01X-ray2.8001-85[»]
2J03X-ray2.8001-85[»]
2V47X-ray3.8002-84[»]
2V49X-ray3.8002-84[»]
2WDIX-ray3.3001-85[»]
2WDJX-ray3.3001-85[»]
2WDLX-ray3.5001-85[»]
2WDNX-ray3.5001-85[»]
2WH2X-ray3.4501-85[»]
2WH4X-ray3.4501-85[»]
2WRJX-ray3.6001-85[»]
2WRLX-ray3.6001-85[»]
2WROX-ray3.6001-85[»]
2WRRX-ray3.6001-85[»]
2X9SX-ray3.1001-85[»]
2X9UX-ray3.1001-85[»]
2XG0X-ray3.2001-85[»]
2XG2X-ray3.2001-85[»]
2XQEX-ray3.1001-85[»]
2XTGelectron microscopy7.8001-85[»]
2XUXelectron microscopy7.6001-85[»]
2Y0VX-ray3.1001-85[»]
2Y0XX-ray3.1001-85[»]
2Y0ZX-ray3.1001-85[»]
2Y11X-ray3.1001-85[»]
2Y13X-ray3.1001-85[»]
2Y15X-ray3.1001-85[»]
2Y17X-ray3.1001-85[»]
2Y19X-ray3.1001-85[»]
3FINelectron microscopy6.4001-85[»]
3HUXX-ray3.1001-85[»]
3HUZX-ray3.1001-85[»]
3I8FX-ray3.1031-85[»]
3I8IX-ray3.1031-85[»]
3I9CX-ray3.5031-85[»]
3I9EX-ray3.5031-85[»]
3KIRX-ray3.3001-85[»]
3KITX-ray3.3001-85[»]
3KIWX-ray3.6001-85[»]
3KIYX-ray3.6001-85[»]
3KNIX-ray3.0001-85[»]
3KNKX-ray3.0001-85[»]
3KNMX-ray3.4501-85[»]
3KNOX-ray3.4501-85[»]
3OH5X-ray3.0001-85[»]
3OH7X-ray3.0001-85[»]
3OHJX-ray3.0001-85[»]
3OHKX-ray3.0001-85[»]
3OHZX-ray3.0001-85[»]
3OI1X-ray3.0001-85[»]
3OI3X-ray3.1001-85[»]
3OI5X-ray3.1001-85[»]
3TVEX-ray3.10310-85[»]
3TVHX-ray3.1039-85[»]
3UXQX-ray3.2001-85[»]
3UXRX-ray3.2001-85[»]
3UYEX-ray3.0031-85[»]
3UYGX-ray3.0031-85[»]
3UZ1X-ray3.3031-85[»]
3UZ2X-ray3.3031-85[»]
3UZ8X-ray3.0031-85[»]
3UZ9X-ray3.0031-85[»]
3UZFX-ray3.3031-85[»]
3UZHX-ray3.3031-85[»]
3UZKX-ray3.3031-85[»]
3UZNX-ray3.3031-85[»]
3V23X-ray3.0001-85[»]
3V25X-ray3.0001-85[»]
3V27X-ray3.1001-85[»]
3V29X-ray3.1001-85[»]
3V2DX-ray2.7001-85[»]
3V2FX-ray2.7001-85[»]
3V6WX-ray3.9001-85[»]
3V6XX-ray3.9001-85[»]
3ZN9X-ray3.1001-85[»]
3ZNEX-ray3.1001-85[»]
3ZVPX-ray3.8001-85[»]
4ABSX-ray3.1001-85[»]
4B8GX-ray3.7001-85[»]
4B8IX-ray3.7001-85[»]
4BTDX-ray2.9502-85[»]
4BYCX-ray3.3501-85[»]
4BYEX-ray3.3501-85[»]
4DHAX-ray3.2001-85[»]
4DHCX-ray3.2001-85[»]
4EJBX-ray3.5201-85[»]
4EJCX-ray3.5201-85[»]
4G5LX-ray3.3031-85[»]
4G5NX-ray3.3031-85[»]
4G5UX-ray3.1031-85[»]
4G5WX-ray3.1031-85[»]
4JUXX-ray2.8601-85[»]
4K0MX-ray3.3002-85[»]
4K0QX-ray3.3002-85[»]
ProteinModelPortalP60493.
SMRP60493. Positions 1-85.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1782.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71605; BAD71605; BAD71605.
GeneID3168387.
KEGGttj:TTHA1782.
PATRIC23958525. VBITheThe93045_1752.

Phylogenomic databases

eggNOGCOG0211.
HOGENOMHOG000111610.
KOK02899.
OMAKDHTLHA.
OrthoDBEOG6N94H6.
ProtClustDBPRK05435.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1824-MONOMER.

Family and domain databases

HAMAPMF_00539. Ribosomal_L27.
InterProIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERPTHR15893. PTHR15893. 1 hit.
PfamPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSPR00063. RIBOSOMALL27.
ProDomPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR00062. L27. 1 hit.
PROSITEPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP60493.

Entry information

Entry nameRL27_THET8
AccessionPrimary (citable) accession number: P60493
Secondary accession number(s): P84123, Q5SHE8
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 88 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references