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Protein

50S ribosomal protein L21

Gene

rplU

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This protein binds to 23S rRNA in the presence of protein L20 (By similarity). Found on the solvent side of the large subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1790-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L21UniRule annotation
Gene namesi
Name:rplUUniRule annotation
Ordered Locus Names:TTHA1783
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001810181 – 10150S ribosomal protein L21Add BLAST101

Interactioni

Subunit structurei

Contacts protein L20 (By similarity). Part of the 50S ribosomal subunit.By similarity

Protein-protein interaction databases

STRINGi300852.TTHA1783

Structurei

Secondary structure

1101
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 7Combined sources4
Beta strandi10 – 13Combined sources4
Beta strandi32 – 34Combined sources3
Beta strandi48 – 51Combined sources4
Beta strandi58 – 66Combined sources9
Beta strandi70 – 76Combined sources7
Turni77 – 80Combined sources4
Beta strandi81 – 87Combined sources7
Beta strandi90 – 98Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RV/YV1-101[»]
1VY4X-ray2.60BV/DV1-101[»]
1VY5X-ray2.55BV/DV1-101[»]
1VY6X-ray2.90BV/DV1-101[»]
1VY7X-ray2.80BV/DV1-101[»]
4L47X-ray3.22RV/YV1-101[»]
4L71X-ray3.90RV/YV1-101[»]
4LELX-ray3.90RV/YV1-101[»]
4LFZX-ray3.92RV/YV1-101[»]
4LNTX-ray2.94RV/YV1-101[»]
4LSKX-ray3.48RV/YV1-101[»]
4LT8X-ray3.14RV/YV1-101[»]
4P6FX-ray3.60RV/YV1-101[»]
4P70X-ray3.68RV/YV1-101[»]
4TUAX-ray3.60RV/YV1-101[»]
4TUBX-ray3.60RV/YV1-101[»]
4TUCX-ray3.60RV/YV1-101[»]
4TUDX-ray3.60RV/YV1-101[»]
4TUEX-ray3.50RV/YV1-101[»]
4V4PX-ray5.5021-101[»]
4V4XX-ray5.00BU1-101[»]
4V4YX-ray5.50BU1-101[»]
4V4ZX-ray4.51BU1-101[»]
4V51X-ray2.80BV/DV1-101[»]
4V5AX-ray3.50BV/DV1-101[»]
4V5CX-ray3.30BV/DV1-101[»]
4V5DX-ray3.50BV/DV1-101[»]
4V5EX-ray3.45BV/DV1-101[»]
4V5FX-ray3.60BV/DV1-101[»]
4V5GX-ray3.60BV/DV1-101[»]
4V5JX-ray3.10BV/DV1-101[»]
4V5KX-ray3.20BV/DV1-101[»]
4V5LX-ray3.10BV1-101[»]
4V5Melectron microscopy7.80BV1-101[»]
4V5Nelectron microscopy7.60BV1-101[»]
4V5PX-ray3.10BV/DV1-101[»]
4V5QX-ray3.10BV/DV1-101[»]
4V5RX-ray3.10BV/DV1-101[»]
4V5SX-ray3.10BV/DV1-101[»]
4V68electron microscopy6.40BV1-101[»]
4V6AX-ray3.10BV/DV1-101[»]
4V6FX-ray3.10A2/D21-101[»]
4V6GX-ray3.50B2/D21-101[»]
4V7JX-ray3.30AV/BV1-101[»]
4V7KX-ray3.60AV/BV1-101[»]
4V7LX-ray3.00BV/DV1-101[»]
4V7MX-ray3.45BV/DV1-101[»]
4V7WX-ray3.00BV/DV1-101[»]
4V7XX-ray3.00BV/DV1-101[»]
4V7YX-ray3.00BV/DV1-101[»]
4V7ZX-ray3.10BV/DV1-101[»]
4V87X-ray3.10A2/D21-101[»]
4V8AX-ray3.20AV/BV1-101[»]
4V8BX-ray3.00B2/D21-101[»]
4V8CX-ray3.30A2/B21-101[»]
4V8DX-ray3.00B2/D21-101[»]
4V8EX-ray3.30A2/C21-101[»]
4V8FX-ray3.30A2/D21-101[»]
4V8GX-ray3.00BV/DV1-101[»]
4V8HX-ray3.10BV/DV1-101[»]
4V8IX-ray2.70BV/DV1-101[»]
4V8JX-ray3.90BV/DV1-101[»]
4V8NX-ray3.10BV/DV1-101[»]
4V8OX-ray3.80BV1-101[»]
4V8QX-ray3.10AV1-101[»]
4V8UX-ray3.70BV/DV1-101[»]
4V8XX-ray3.35BV/DV1-101[»]
4V90X-ray2.95BV1-101[»]
4V95X-ray3.20BV/DV1-101[»]
4V97X-ray3.52BV/DV1-101[»]
4V9AX-ray3.30B2/D21-101[»]
4V9BX-ray3.10B2/D21-101[»]
4V9HX-ray2.86BV1-101[»]
4V9IX-ray3.30BV/DV1-101[»]
4V9RX-ray3.00BV/DV1-101[»]
4V9SX-ray3.10BV/DV1-101[»]
4W2EX-ray2.90V1-101[»]
4W2FX-ray2.40BV/DV1-101[»]
4W2GX-ray2.55BV/DV1-101[»]
4W2HX-ray2.70BV/DV1-101[»]
4W2IX-ray2.70BV/DV1-101[»]
4W4GX-ray3.30RV/YV1-101[»]
4WPOX-ray2.80AV/CV1-101[»]
4WQ1X-ray3.1095/D81-101[»]
4WQFX-ray2.80AV/CV1-101[»]
4WQRX-ray3.1595/D81-101[»]
4WQUX-ray2.80AV/CV1-101[»]
4WQYX-ray2.80AV/CV1-101[»]
4WR6X-ray3.0595/D81-101[»]
4WRAX-ray3.0595/D81-101[»]
4WROX-ray3.05D81-101[»]
4WSDX-ray2.9595/D81-101[»]
4WSMX-ray3.3095/D81-101[»]
4WT1X-ray3.0595/D81-101[»]
4WT8X-ray3.40CU/DU1-101[»]
4WU1X-ray3.2095/D81-101[»]
4WZDX-ray3.1095/D81-101[»]
4WZOX-ray3.3095/D81-101[»]
4Y4OX-ray2.301V/2V1-101[»]
4Y4PX-ray2.501V/2V1-101[»]
4YPBX-ray3.40RV/YV1-101[»]
4YZVX-ray3.10RV/YV1-101[»]
4Z3SX-ray2.651V/2V1-101[»]
4Z8CX-ray2.901V/2V1-101[»]
4ZERX-ray3.101V/2V1-101[»]
4ZSNX-ray3.60RV/YV1-101[»]
5A9Zelectron microscopy4.70AS1-101[»]
5AA0electron microscopy5.00AS1-101[»]
5CZPX-ray3.30RV/YV1-101[»]
5D8BX-ray3.63LB/P1-101[»]
5DFEX-ray3.10RV/YV1-101[»]
5DOXX-ray3.101V/2V1-101[»]
5DOYX-ray2.601V/2V1-101[»]
5E7KX-ray3.2095/D81-101[»]
5E81X-ray2.9595/D81-101[»]
5EL4X-ray3.1595/D81-101[»]
5EL5X-ray3.1595/D81-101[»]
5EL6X-ray3.1095/D81-101[»]
5EL7X-ray3.1595/D81-101[»]
5F8KX-ray2.801V/2V1-101[»]
5FDUX-ray2.901V/2V1-101[»]
5FDVX-ray2.801V/2V1-101[»]
5HAUX-ray3.001T/2T1-101[»]
5HCPX-ray2.891V/2V1-101[»]
5HCQX-ray2.801V/2V1-101[»]
5HCRX-ray2.801V/2V1-101[»]
5HD1X-ray2.701V/2V1-101[»]
5IB7X-ray2.9995/D81-101[»]
5IB8X-ray3.1395/D81-101[»]
5IBBX-ray2.9695/D81-101[»]
5IMQelectron microscopy3.80n1-101[»]
5IMRelectron microscopy-n1-101[»]
5J30X-ray3.20RV/YV1-101[»]
5J3CX-ray3.04RV/YV1-101[»]
5J4BX-ray2.601V/2V1-101[»]
5J4CX-ray2.801V/2V1-101[»]
5J8BX-ray2.60V1-101[»]
5NDKX-ray2.9595/D81-101[»]
5OT7electron microscopy3.80w1-101[»]
5UQ7electron microscopy3.50V1-101[»]
5UQ8electron microscopy3.20V1-101[»]
5VP2X-ray2.801V/2V1-101[»]
5W4KX-ray2.701V/2V1-101[»]
5WISX-ray2.701V/2V1-101[»]
5WITX-ray2.601V/2V1-101[»]
6FKRX-ray3.201V/2V1-101[»]
ProteinModelPortaliP60492
SMRiP60492
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60492

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL21 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105KK9 Bacteria
COG0261 LUCA
HOGENOMiHOG000036265
KOiK02888
OMAiGHRQQYT
PhylomeDBiP60492

Family and domain databases

HAMAPiMF_01363 Ribosomal_L21, 1 hit
InterProiView protein in InterPro
IPR036164 L21-like_sf
IPR028909 L21p-like
IPR001787 Ribosomal_L21
PANTHERiPTHR21349 PTHR21349, 1 hit
PfamiView protein in Pfam
PF00829 Ribosomal_L21p, 1 hit
SUPFAMiSSF141091 SSF141091, 1 hit
TIGRFAMsiTIGR00061 L21, 1 hit

Sequencei

Sequence statusi: Complete.

P60492-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP
60 70 80 90 100
VVEGASVVAE VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQP YTELLIKEIR

G
Length:101
Mass (Da):11,047
Last modified:March 29, 2005 - v2
Checksum:i3117549029950A0C
GO

Mass spectrometryi

Molecular mass is 11048 Da from positions 1 - 101. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71606.1
RefSeqiWP_008633581.1, NC_006461.1
YP_145049.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71606; BAD71606; BAD71606
GeneIDi3169471
KEGGittj:TTHA1783
PATRICifig|300852.9.peg.1753

Similar proteinsi

Entry informationi

Entry nameiRL21_THET8
AccessioniPrimary (citable) accession number: P60492
Secondary accession number(s): Q5SHE7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: May 23, 2018
This is version 118 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

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