Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

P60491

- RL20_THET8

UniProt

P60491 - RL20_THET8

Protein

50S ribosomal protein L20

Gene

rplT

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-578-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L20
    Gene namesi
    Name:rplT
    Ordered Locus Names:TTHA0553
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 11811750S ribosomal protein L20PRO_0000177250Add
    BLAST

    Proteomic databases

    PRIDEiP60491.

    Interactioni

    Protein-protein interaction databases

    STRINGi300852.TTHA0553.

    Structurei

    Secondary structure

    1
    118
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi9 – 2012
    Turni21 – 233
    Helixi26 – 294
    Helixi32 – 7140
    Beta strandi72 – 743
    Helixi76 – 8611
    Beta strandi89 – 913
    Helixi92 – 10110
    Helixi103 – 11513

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1YL3X-ray5.5011-116[»]
    2HGJX-ray5.00T1-118[»]
    2HGQX-ray5.50T1-118[»]
    2HGUX-ray4.51T1-118[»]
    2J01X-ray2.80U2-118[»]
    2J03X-ray2.80U2-118[»]
    2V47X-ray3.50U2-118[»]
    2V49X-ray3.50U2-118[»]
    2WDIX-ray3.30U1-118[»]
    2WDJX-ray3.30U1-118[»]
    2WDLX-ray3.50U1-118[»]
    2WDNX-ray3.50U1-118[»]
    2WH2X-ray3.45U1-118[»]
    2WH4X-ray3.45U1-118[»]
    2WRJX-ray3.60U1-118[»]
    2WRLX-ray3.60U1-118[»]
    2WROX-ray3.60U1-118[»]
    2WRRX-ray3.60U1-118[»]
    2X9SX-ray3.10U1-118[»]
    2X9UX-ray3.10U1-118[»]
    2XG0X-ray3.20U1-118[»]
    2XG2X-ray3.20U1-118[»]
    2XQEX-ray3.10U1-118[»]
    2XTGelectron microscopy7.80U1-118[»]
    2XUXelectron microscopy7.60U1-118[»]
    2Y0VX-ray3.10U1-118[»]
    2Y0XX-ray3.10U1-118[»]
    2Y0ZX-ray3.10U1-118[»]
    2Y11X-ray3.10U1-118[»]
    2Y13X-ray3.10U1-118[»]
    2Y15X-ray3.10U1-118[»]
    2Y17X-ray3.10U1-118[»]
    2Y19X-ray3.10U1-118[»]
    3FINelectron microscopy6.40U2-118[»]
    3HUXX-ray3.10U1-118[»]
    3HUZX-ray3.10U1-118[»]
    3I8FX-ray3.1011-118[»]
    3I8IX-ray3.1011-118[»]
    3I9CX-ray3.5011-118[»]
    3I9EX-ray3.5011-118[»]
    3KIRX-ray3.30U1-118[»]
    3KITX-ray3.30U1-118[»]
    3KIWX-ray3.60U1-118[»]
    3KIYX-ray3.60U1-118[»]
    3KNIX-ray3.00U1-118[»]
    3KNKX-ray3.00U1-118[»]
    3KNMX-ray3.45U1-118[»]
    3KNOX-ray3.45U1-118[»]
    3TVEX-ray3.1012-118[»]
    3TVHX-ray3.1012-118[»]
    3UXQX-ray3.20U1-118[»]
    3UXRX-ray3.20U1-118[»]
    3UYEX-ray3.0011-118[»]
    3UYGX-ray3.0011-118[»]
    3UZ1X-ray3.3011-118[»]
    3UZ2X-ray3.3011-118[»]
    3UZ8X-ray3.0011-118[»]
    3UZ9X-ray3.0011-118[»]
    3UZFX-ray3.3011-118[»]
    3UZHX-ray3.3011-118[»]
    3UZKX-ray3.3011-118[»]
    3UZNX-ray3.3011-118[»]
    3V23X-ray3.00U1-118[»]
    3V25X-ray3.00U1-118[»]
    3V27X-ray3.10U1-118[»]
    3V29X-ray3.10U1-118[»]
    3V2DX-ray2.70U1-118[»]
    3V2FX-ray2.70U1-118[»]
    3V6WX-ray3.90U1-118[»]
    3V6XX-ray3.90U1-118[»]
    3ZN9X-ray3.10U1-118[»]
    3ZNEX-ray3.10U1-118[»]
    3ZVPX-ray3.80U1-118[»]
    4ABSX-ray3.10U1-118[»]
    4B8GX-ray3.70U1-118[»]
    4B8IX-ray3.70U1-118[»]
    4BTDX-ray2.95U2-118[»]
    4BYCX-ray3.35U1-118[»]
    4BYEX-ray3.35U1-118[»]
    4DHAX-ray3.20U1-118[»]
    4DHCX-ray3.20U1-118[»]
    4EJBX-ray3.52U1-118[»]
    4EJCX-ray3.52U1-118[»]
    4G5LX-ray3.3011-118[»]
    4G5NX-ray3.3011-118[»]
    4G5UX-ray3.1011-118[»]
    4G5WX-ray3.1011-118[»]
    4JUXX-ray2.86U1-118[»]
    4K0MX-ray3.30U2-118[»]
    4K0QX-ray3.30U2-118[»]
    4NVVX-ray3.00U1-118[»]
    4NVXX-ray3.00U1-118[»]
    4NVZX-ray3.10U1-118[»]
    4NW1X-ray3.10U1-118[»]
    ProteinModelPortaliP60491.
    SMRiP60491. Positions 2-118.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP60491.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L20P family.Curated

    Phylogenomic databases

    eggNOGiCOG0292.
    HOGENOMiHOG000035046.
    KOiK02887.
    OMAiINAEARN.
    OrthoDBiEOG6CGCMB.
    PhylomeDBiP60491.

    Family and domain databases

    HAMAPiMF_00382. Ribosomal_L20.
    InterProiIPR005813. Ribosomal_L20.
    [Graphical view]
    PANTHERiPTHR10986. PTHR10986. 1 hit.
    PfamiPF00453. Ribosomal_L20. 1 hit.
    [Graphical view]
    PRINTSiPR00062. RIBOSOMALL20.
    TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
    PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P60491-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR    50
    KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV 100
    REPQVFAELV ERAKAAQG 118
    Length:118
    Mass (Da):13,743
    Last modified:January 23, 2007 - v3
    Checksum:iA5A8B028B15145F7
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti25 – 251W → WV AA sequence (PubMed:11154066)Curated

    Mass spectrometryi

    Molecular mass is 13612 Da from positions 2 - 118. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70376.1.
    RefSeqiYP_143819.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70376; BAD70376; BAD70376.
    GeneIDi3169980.
    KEGGittj:TTHA0553.
    PATRICi23956083. VBITheThe93045_0552.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70376.1 .
    RefSeqi YP_143819.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1YL3 X-ray 5.50 1 1-116 [» ]
    2HGJ X-ray 5.00 T 1-118 [» ]
    2HGQ X-ray 5.50 T 1-118 [» ]
    2HGU X-ray 4.51 T 1-118 [» ]
    2J01 X-ray 2.80 U 2-118 [» ]
    2J03 X-ray 2.80 U 2-118 [» ]
    2V47 X-ray 3.50 U 2-118 [» ]
    2V49 X-ray 3.50 U 2-118 [» ]
    2WDI X-ray 3.30 U 1-118 [» ]
    2WDJ X-ray 3.30 U 1-118 [» ]
    2WDL X-ray 3.50 U 1-118 [» ]
    2WDN X-ray 3.50 U 1-118 [» ]
    2WH2 X-ray 3.45 U 1-118 [» ]
    2WH4 X-ray 3.45 U 1-118 [» ]
    2WRJ X-ray 3.60 U 1-118 [» ]
    2WRL X-ray 3.60 U 1-118 [» ]
    2WRO X-ray 3.60 U 1-118 [» ]
    2WRR X-ray 3.60 U 1-118 [» ]
    2X9S X-ray 3.10 U 1-118 [» ]
    2X9U X-ray 3.10 U 1-118 [» ]
    2XG0 X-ray 3.20 U 1-118 [» ]
    2XG2 X-ray 3.20 U 1-118 [» ]
    2XQE X-ray 3.10 U 1-118 [» ]
    2XTG electron microscopy 7.80 U 1-118 [» ]
    2XUX electron microscopy 7.60 U 1-118 [» ]
    2Y0V X-ray 3.10 U 1-118 [» ]
    2Y0X X-ray 3.10 U 1-118 [» ]
    2Y0Z X-ray 3.10 U 1-118 [» ]
    2Y11 X-ray 3.10 U 1-118 [» ]
    2Y13 X-ray 3.10 U 1-118 [» ]
    2Y15 X-ray 3.10 U 1-118 [» ]
    2Y17 X-ray 3.10 U 1-118 [» ]
    2Y19 X-ray 3.10 U 1-118 [» ]
    3FIN electron microscopy 6.40 U 2-118 [» ]
    3HUX X-ray 3.10 U 1-118 [» ]
    3HUZ X-ray 3.10 U 1-118 [» ]
    3I8F X-ray 3.10 1 1-118 [» ]
    3I8I X-ray 3.10 1 1-118 [» ]
    3I9C X-ray 3.50 1 1-118 [» ]
    3I9E X-ray 3.50 1 1-118 [» ]
    3KIR X-ray 3.30 U 1-118 [» ]
    3KIT X-ray 3.30 U 1-118 [» ]
    3KIW X-ray 3.60 U 1-118 [» ]
    3KIY X-ray 3.60 U 1-118 [» ]
    3KNI X-ray 3.00 U 1-118 [» ]
    3KNK X-ray 3.00 U 1-118 [» ]
    3KNM X-ray 3.45 U 1-118 [» ]
    3KNO X-ray 3.45 U 1-118 [» ]
    3TVE X-ray 3.10 1 2-118 [» ]
    3TVH X-ray 3.10 1 2-118 [» ]
    3UXQ X-ray 3.20 U 1-118 [» ]
    3UXR X-ray 3.20 U 1-118 [» ]
    3UYE X-ray 3.00 1 1-118 [» ]
    3UYG X-ray 3.00 1 1-118 [» ]
    3UZ1 X-ray 3.30 1 1-118 [» ]
    3UZ2 X-ray 3.30 1 1-118 [» ]
    3UZ8 X-ray 3.00 1 1-118 [» ]
    3UZ9 X-ray 3.00 1 1-118 [» ]
    3UZF X-ray 3.30 1 1-118 [» ]
    3UZH X-ray 3.30 1 1-118 [» ]
    3UZK X-ray 3.30 1 1-118 [» ]
    3UZN X-ray 3.30 1 1-118 [» ]
    3V23 X-ray 3.00 U 1-118 [» ]
    3V25 X-ray 3.00 U 1-118 [» ]
    3V27 X-ray 3.10 U 1-118 [» ]
    3V29 X-ray 3.10 U 1-118 [» ]
    3V2D X-ray 2.70 U 1-118 [» ]
    3V2F X-ray 2.70 U 1-118 [» ]
    3V6W X-ray 3.90 U 1-118 [» ]
    3V6X X-ray 3.90 U 1-118 [» ]
    3ZN9 X-ray 3.10 U 1-118 [» ]
    3ZNE X-ray 3.10 U 1-118 [» ]
    3ZVP X-ray 3.80 U 1-118 [» ]
    4ABS X-ray 3.10 U 1-118 [» ]
    4B8G X-ray 3.70 U 1-118 [» ]
    4B8I X-ray 3.70 U 1-118 [» ]
    4BTD X-ray 2.95 U 2-118 [» ]
    4BYC X-ray 3.35 U 1-118 [» ]
    4BYE X-ray 3.35 U 1-118 [» ]
    4DHA X-ray 3.20 U 1-118 [» ]
    4DHC X-ray 3.20 U 1-118 [» ]
    4EJB X-ray 3.52 U 1-118 [» ]
    4EJC X-ray 3.52 U 1-118 [» ]
    4G5L X-ray 3.30 1 1-118 [» ]
    4G5N X-ray 3.30 1 1-118 [» ]
    4G5U X-ray 3.10 1 1-118 [» ]
    4G5W X-ray 3.10 1 1-118 [» ]
    4JUX X-ray 2.86 U 1-118 [» ]
    4K0M X-ray 3.30 U 2-118 [» ]
    4K0Q X-ray 3.30 U 2-118 [» ]
    4NVV X-ray 3.00 U 1-118 [» ]
    4NVX X-ray 3.00 U 1-118 [» ]
    4NVZ X-ray 3.10 U 1-118 [» ]
    4NW1 X-ray 3.10 U 1-118 [» ]
    ProteinModelPortali P60491.
    SMRi P60491. Positions 2-118.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0553.

    Proteomic databases

    PRIDEi P60491.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70376 ; BAD70376 ; BAD70376 .
    GeneIDi 3169980.
    KEGGi ttj:TTHA0553.
    PATRICi 23956083. VBITheThe93045_0552.

    Phylogenomic databases

    eggNOGi COG0292.
    HOGENOMi HOG000035046.
    KOi K02887.
    OMAi INAEARN.
    OrthoDBi EOG6CGCMB.
    PhylomeDBi P60491.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-578-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P60491.

    Family and domain databases

    HAMAPi MF_00382. Ribosomal_L20.
    InterProi IPR005813. Ribosomal_L20.
    [Graphical view ]
    PANTHERi PTHR10986. PTHR10986. 1 hit.
    Pfami PF00453. Ribosomal_L20. 1 hit.
    [Graphical view ]
    PRINTSi PR00062. RIBOSOMALL20.
    TIGRFAMsi TIGR01032. rplT_bact. 1 hit.
    PROSITEi PS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-29.
    3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.

    Entry informationi

    Entry nameiRL20_THET8
    AccessioniPrimary (citable) accession number: P60491
    Secondary accession number(s): Q5SKU0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 1, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 88 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3