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P60491 (RL20_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L20
Gene names
Name:rplT
Ordered Locus Names:TTHA0553
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length118 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity. HAMAP-Rule MF_00382

Sequence similarities

Belongs to the ribosomal protein L20P family.

Mass spectrometry

Molecular mass is 13612 Da from positions 2 - 118. Determined by MALDI. Ref.3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2
Chain2 – 11811750S ribosomal protein L20 HAMAP-Rule MF_00382
PRO_0000177250

Experimental info

Sequence conflict251W → WV AA sequence Ref.2

Secondary structure

1 ................ 118
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P60491 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: A5A8B028B15145F7

FASTA11813,743
        10         20         30         40         50         60 
MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR KRRKRDFRRL 

        70         80         90        100        110 
WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV REPQVFAELV ERAKAAQG

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-29.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD70376.1.
RefSeqYP_143819.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5011-103[»]
2HGJX-ray5.00T1-118[»]
2HGQX-ray5.50T1-118[»]
2HGUX-ray4.51T1-118[»]
2J01X-ray2.80U1-118[»]
2J03X-ray2.80U1-118[»]
2V47X-ray3.80U2-117[»]
2V49X-ray3.80U2-117[»]
2WDIX-ray3.30U1-118[»]
2WDJX-ray3.30U1-118[»]
2WDLX-ray3.50U1-118[»]
2WDNX-ray3.50U1-118[»]
2WH2X-ray3.45U1-118[»]
2WH4X-ray3.45U1-118[»]
2WRJX-ray3.60U1-118[»]
2WRLX-ray3.60U1-118[»]
2WROX-ray3.60U1-118[»]
2WRRX-ray3.60U1-118[»]
2X9SX-ray3.10U1-118[»]
2X9UX-ray3.10U1-118[»]
2XG0X-ray3.20U1-118[»]
2XG2X-ray3.20U1-118[»]
2XQEX-ray3.10U1-118[»]
2XTGelectron microscopy7.80U1-118[»]
2XUXelectron microscopy7.60U1-118[»]
2Y0VX-ray3.10U1-118[»]
2Y0XX-ray3.10U1-118[»]
2Y0ZX-ray3.10U1-118[»]
2Y11X-ray3.10U1-118[»]
2Y13X-ray3.10U1-118[»]
2Y15X-ray3.10U1-118[»]
2Y17X-ray3.10U1-118[»]
2Y19X-ray3.10U1-118[»]
3FINelectron microscopy6.40U2-118[»]
3HUXX-ray3.10U1-118[»]
3HUZX-ray3.10U1-118[»]
3I8FX-ray3.1011-118[»]
3I8IX-ray3.1011-118[»]
3I9CX-ray3.5011-118[»]
3I9EX-ray3.5011-118[»]
3KIRX-ray3.30U1-118[»]
3KITX-ray3.30U1-118[»]
3KIWX-ray3.60U1-118[»]
3KIYX-ray3.60U1-118[»]
3KNIX-ray3.00U1-118[»]
3KNKX-ray3.00U1-118[»]
3KNMX-ray3.45U1-118[»]
3KNOX-ray3.45U1-118[»]
3TVEX-ray3.1012-118[»]
3TVHX-ray3.1012-118[»]
3UXQX-ray3.20U1-118[»]
3UXRX-ray3.20U1-118[»]
3UYEX-ray3.0011-118[»]
3UYGX-ray3.0011-118[»]
3UZ1X-ray3.3011-118[»]
3UZ2X-ray3.3011-118[»]
3UZ8X-ray3.0011-118[»]
3UZ9X-ray3.0011-118[»]
3UZFX-ray3.3011-118[»]
3UZHX-ray3.3011-118[»]
3UZKX-ray3.3011-118[»]
3UZNX-ray3.3011-118[»]
3V23X-ray3.00U1-118[»]
3V25X-ray3.00U1-118[»]
3V27X-ray3.10U1-118[»]
3V29X-ray3.10U1-118[»]
3V2DX-ray2.70U1-118[»]
3V2FX-ray2.70U1-118[»]
3ZVPX-ray3.80U1-118[»]
4ABSX-ray3.10U1-118[»]
4DHAX-ray3.20U1-118[»]
4DHCX-ray3.20U1-118[»]
4G5LX-ray3.3011-118[»]
4G5NX-ray3.3011-118[»]
4G5UX-ray3.1011-118[»]
4G5WX-ray3.1011-118[»]
ProteinModelPortalP60491.
SMRP60491. Positions 2-118.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA0553.

Proteomic databases

PRIDEP60491.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70376; BAD70376; BAD70376.
GeneID3169980.
KEGGttj:TTHA0553.
PATRIC23956083. VBITheThe93045_0552.

Phylogenomic databases

eggNOGCOG0292.
HOGENOMHOG000035046.
KOK02887.
OMAGRRKNVW.
ProtClustDBPRK05185.

Family and domain databases

HAMAPMF_00382. Ribosomal_L20.
InterProIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERPTHR10986. PTHR10986. 1 hit.
PfamPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSPR00062. RIBOSOMALL20.
TIGRFAMsTIGR01032. rplT_bact. 1 hit.
PROSITEPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP60491.

Entry information

Entry nameRL20_THET8
AccessionPrimary (citable) accession number: P60491
Secondary accession number(s): Q5SKU0
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: May 1, 2013
This is version 78 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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