SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P60491

- RL20_THET8

UniProt

P60491 - RL20_THET8

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
50S ribosomal protein L20
Gene
rplT, TTHA0553
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-578-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:TTHA0553
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 11811750S ribosomal protein L20UniRule annotation
PRO_0000177250Add
BLAST

Proteomic databases

PRIDEiP60491.

Interactioni

Protein-protein interaction databases

STRINGi300852.TTHA0553.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2012
Turni21 – 233
Helixi26 – 294
Helixi32 – 7140
Beta strandi72 – 743
Helixi76 – 8611
Beta strandi89 – 913
Helixi92 – 10110
Helixi103 – 11513

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5011-116[»]
2HGJX-ray5.00T1-118[»]
2HGQX-ray5.50T1-118[»]
2HGUX-ray4.51T1-118[»]
2J01X-ray2.80U2-118[»]
2J03X-ray2.80U2-118[»]
2V47X-ray3.50U2-118[»]
2V49X-ray3.50U2-118[»]
2WDIX-ray3.30U1-118[»]
2WDJX-ray3.30U1-118[»]
2WDLX-ray3.50U1-118[»]
2WDNX-ray3.50U1-118[»]
2WH2X-ray3.45U1-118[»]
2WH4X-ray3.45U1-118[»]
2WRJX-ray3.60U1-118[»]
2WRLX-ray3.60U1-118[»]
2WROX-ray3.60U1-118[»]
2WRRX-ray3.60U1-118[»]
2X9SX-ray3.10U1-118[»]
2X9UX-ray3.10U1-118[»]
2XG0X-ray3.20U1-118[»]
2XG2X-ray3.20U1-118[»]
2XQEX-ray3.10U1-118[»]
2XTGelectron microscopy7.80U1-118[»]
2XUXelectron microscopy7.60U1-118[»]
2Y0VX-ray3.10U1-118[»]
2Y0XX-ray3.10U1-118[»]
2Y0ZX-ray3.10U1-118[»]
2Y11X-ray3.10U1-118[»]
2Y13X-ray3.10U1-118[»]
2Y15X-ray3.10U1-118[»]
2Y17X-ray3.10U1-118[»]
2Y19X-ray3.10U1-118[»]
3FINelectron microscopy6.40U2-118[»]
3HUXX-ray3.10U1-118[»]
3HUZX-ray3.10U1-118[»]
3I8FX-ray3.1011-118[»]
3I8IX-ray3.1011-118[»]
3I9CX-ray3.5011-118[»]
3I9EX-ray3.5011-118[»]
3KIRX-ray3.30U1-118[»]
3KITX-ray3.30U1-118[»]
3KIWX-ray3.60U1-118[»]
3KIYX-ray3.60U1-118[»]
3KNIX-ray3.00U1-118[»]
3KNKX-ray3.00U1-118[»]
3KNMX-ray3.45U1-118[»]
3KNOX-ray3.45U1-118[»]
3TVEX-ray3.1012-118[»]
3TVHX-ray3.1012-118[»]
3UXQX-ray3.20U1-118[»]
3UXRX-ray3.20U1-118[»]
3UYEX-ray3.0011-118[»]
3UYGX-ray3.0011-118[»]
3UZ1X-ray3.3011-118[»]
3UZ2X-ray3.3011-118[»]
3UZ8X-ray3.0011-118[»]
3UZ9X-ray3.0011-118[»]
3UZFX-ray3.3011-118[»]
3UZHX-ray3.3011-118[»]
3UZKX-ray3.3011-118[»]
3UZNX-ray3.3011-118[»]
3V23X-ray3.00U1-118[»]
3V25X-ray3.00U1-118[»]
3V27X-ray3.10U1-118[»]
3V29X-ray3.10U1-118[»]
3V2DX-ray2.70U1-118[»]
3V2FX-ray2.70U1-118[»]
3V6WX-ray3.90U1-118[»]
3V6XX-ray3.90U1-118[»]
3ZN9X-ray3.10U1-118[»]
3ZNEX-ray3.10U1-118[»]
3ZVPX-ray3.80U1-118[»]
4ABSX-ray3.10U1-118[»]
4B8GX-ray3.70U1-118[»]
4B8IX-ray3.70U1-118[»]
4BTDX-ray2.95U2-118[»]
4BYCX-ray3.35U1-118[»]
4BYEX-ray3.35U1-118[»]
4DHAX-ray3.20U1-118[»]
4DHCX-ray3.20U1-118[»]
4EJBX-ray3.52U1-118[»]
4EJCX-ray3.52U1-118[»]
4G5LX-ray3.3011-118[»]
4G5NX-ray3.3011-118[»]
4G5UX-ray3.1011-118[»]
4G5WX-ray3.1011-118[»]
4JUXX-ray2.86U1-118[»]
4K0MX-ray3.30U2-118[»]
4K0QX-ray3.30U2-118[»]
4NVVX-ray3.00U1-118[»]
4NVXX-ray3.00U1-118[»]
4NVZX-ray3.10U1-118[»]
4NW1X-ray3.10U1-118[»]
ProteinModelPortaliP60491.
SMRiP60491. Positions 2-118.

Miscellaneous databases

EvolutionaryTraceiP60491.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0292.
HOGENOMiHOG000035046.
KOiK02887.
OMAiINAEARN.
OrthoDBiEOG6CGCMB.
PhylomeDBiP60491.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60491-1 [UniParc]FASTAAdd to Basket

« Hide

MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR    50
KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV 100
REPQVFAELV ERAKAAQG 118
Length:118
Mass (Da):13,743
Last modified:January 23, 2007 - v3
Checksum:iA5A8B028B15145F7
GO

Mass spectrometryi

Molecular mass is 13612 Da from positions 2 - 118. Determined by MALDI. 1 Publication

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti25 – 251W → WV AA sequence 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70376.1.
RefSeqiYP_143819.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70376; BAD70376; BAD70376.
GeneIDi3169980.
KEGGittj:TTHA0553.
PATRICi23956083. VBITheThe93045_0552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70376.1 .
RefSeqi YP_143819.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1YL3 X-ray 5.50 1 1-116 [» ]
2HGJ X-ray 5.00 T 1-118 [» ]
2HGQ X-ray 5.50 T 1-118 [» ]
2HGU X-ray 4.51 T 1-118 [» ]
2J01 X-ray 2.80 U 2-118 [» ]
2J03 X-ray 2.80 U 2-118 [» ]
2V47 X-ray 3.50 U 2-118 [» ]
2V49 X-ray 3.50 U 2-118 [» ]
2WDI X-ray 3.30 U 1-118 [» ]
2WDJ X-ray 3.30 U 1-118 [» ]
2WDL X-ray 3.50 U 1-118 [» ]
2WDN X-ray 3.50 U 1-118 [» ]
2WH2 X-ray 3.45 U 1-118 [» ]
2WH4 X-ray 3.45 U 1-118 [» ]
2WRJ X-ray 3.60 U 1-118 [» ]
2WRL X-ray 3.60 U 1-118 [» ]
2WRO X-ray 3.60 U 1-118 [» ]
2WRR X-ray 3.60 U 1-118 [» ]
2X9S X-ray 3.10 U 1-118 [» ]
2X9U X-ray 3.10 U 1-118 [» ]
2XG0 X-ray 3.20 U 1-118 [» ]
2XG2 X-ray 3.20 U 1-118 [» ]
2XQE X-ray 3.10 U 1-118 [» ]
2XTG electron microscopy 7.80 U 1-118 [» ]
2XUX electron microscopy 7.60 U 1-118 [» ]
2Y0V X-ray 3.10 U 1-118 [» ]
2Y0X X-ray 3.10 U 1-118 [» ]
2Y0Z X-ray 3.10 U 1-118 [» ]
2Y11 X-ray 3.10 U 1-118 [» ]
2Y13 X-ray 3.10 U 1-118 [» ]
2Y15 X-ray 3.10 U 1-118 [» ]
2Y17 X-ray 3.10 U 1-118 [» ]
2Y19 X-ray 3.10 U 1-118 [» ]
3FIN electron microscopy 6.40 U 2-118 [» ]
3HUX X-ray 3.10 U 1-118 [» ]
3HUZ X-ray 3.10 U 1-118 [» ]
3I8F X-ray 3.10 1 1-118 [» ]
3I8I X-ray 3.10 1 1-118 [» ]
3I9C X-ray 3.50 1 1-118 [» ]
3I9E X-ray 3.50 1 1-118 [» ]
3KIR X-ray 3.30 U 1-118 [» ]
3KIT X-ray 3.30 U 1-118 [» ]
3KIW X-ray 3.60 U 1-118 [» ]
3KIY X-ray 3.60 U 1-118 [» ]
3KNI X-ray 3.00 U 1-118 [» ]
3KNK X-ray 3.00 U 1-118 [» ]
3KNM X-ray 3.45 U 1-118 [» ]
3KNO X-ray 3.45 U 1-118 [» ]
3TVE X-ray 3.10 1 2-118 [» ]
3TVH X-ray 3.10 1 2-118 [» ]
3UXQ X-ray 3.20 U 1-118 [» ]
3UXR X-ray 3.20 U 1-118 [» ]
3UYE X-ray 3.00 1 1-118 [» ]
3UYG X-ray 3.00 1 1-118 [» ]
3UZ1 X-ray 3.30 1 1-118 [» ]
3UZ2 X-ray 3.30 1 1-118 [» ]
3UZ8 X-ray 3.00 1 1-118 [» ]
3UZ9 X-ray 3.00 1 1-118 [» ]
3UZF X-ray 3.30 1 1-118 [» ]
3UZH X-ray 3.30 1 1-118 [» ]
3UZK X-ray 3.30 1 1-118 [» ]
3UZN X-ray 3.30 1 1-118 [» ]
3V23 X-ray 3.00 U 1-118 [» ]
3V25 X-ray 3.00 U 1-118 [» ]
3V27 X-ray 3.10 U 1-118 [» ]
3V29 X-ray 3.10 U 1-118 [» ]
3V2D X-ray 2.70 U 1-118 [» ]
3V2F X-ray 2.70 U 1-118 [» ]
3V6W X-ray 3.90 U 1-118 [» ]
3V6X X-ray 3.90 U 1-118 [» ]
3ZN9 X-ray 3.10 U 1-118 [» ]
3ZNE X-ray 3.10 U 1-118 [» ]
3ZVP X-ray 3.80 U 1-118 [» ]
4ABS X-ray 3.10 U 1-118 [» ]
4B8G X-ray 3.70 U 1-118 [» ]
4B8I X-ray 3.70 U 1-118 [» ]
4BTD X-ray 2.95 U 2-118 [» ]
4BYC X-ray 3.35 U 1-118 [» ]
4BYE X-ray 3.35 U 1-118 [» ]
4DHA X-ray 3.20 U 1-118 [» ]
4DHC X-ray 3.20 U 1-118 [» ]
4EJB X-ray 3.52 U 1-118 [» ]
4EJC X-ray 3.52 U 1-118 [» ]
4G5L X-ray 3.30 1 1-118 [» ]
4G5N X-ray 3.30 1 1-118 [» ]
4G5U X-ray 3.10 1 1-118 [» ]
4G5W X-ray 3.10 1 1-118 [» ]
4JUX X-ray 2.86 U 1-118 [» ]
4K0M X-ray 3.30 U 2-118 [» ]
4K0Q X-ray 3.30 U 2-118 [» ]
4NVV X-ray 3.00 U 1-118 [» ]
4NVX X-ray 3.00 U 1-118 [» ]
4NVZ X-ray 3.10 U 1-118 [» ]
4NW1 X-ray 3.10 U 1-118 [» ]
ProteinModelPortali P60491.
SMRi P60491. Positions 2-118.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0553.

Proteomic databases

PRIDEi P60491.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70376 ; BAD70376 ; BAD70376 .
GeneIDi 3169980.
KEGGi ttj:TTHA0553.
PATRICi 23956083. VBITheThe93045_0552.

Phylogenomic databases

eggNOGi COG0292.
HOGENOMi HOG000035046.
KOi K02887.
OMAi INAEARN.
OrthoDBi EOG6CGCMB.
PhylomeDBi P60491.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-578-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60491.

Family and domain databases

HAMAPi MF_00382. Ribosomal_L20.
InterProi IPR005813. Ribosomal_L20.
[Graphical view ]
PANTHERi PTHR10986. PTHR10986. 1 hit.
Pfami PF00453. Ribosomal_L20. 1 hit.
[Graphical view ]
PRINTSi PR00062. RIBOSOMALL20.
TIGRFAMsi TIGR01032. rplT_bact. 1 hit.
PROSITEi PS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-29.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL20_THET8
AccessioniPrimary (citable) accession number: P60491
Secondary accession number(s): Q5SKU0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 87 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi