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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-570-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:TTHA0553
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001772502 – 11850S ribosomal protein L20Add BLAST117

Interactioni

Protein-protein interaction databases

STRINGi300852.TTHA0553

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 20Combined sources12
Turni21 – 23Combined sources3
Helixi27 – 30Combined sources4
Helixi34 – 70Combined sources37
Helixi76 – 85Combined sources10
Helixi93 – 95Combined sources3
Turni96 – 100Combined sources5
Helixi103 – 115Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RU/YU1-118[»]
1VY4X-ray2.60BU/DU1-118[»]
1VY5X-ray2.55BU/DU1-118[»]
1VY6X-ray2.90BU/DU1-118[»]
1VY7X-ray2.80BU/DU1-118[»]
4L47X-ray3.22RU/YU1-118[»]
4L71X-ray3.90RU/YU1-118[»]
4LELX-ray3.90RU/YU1-118[»]
4LFZX-ray3.92RU/YU1-118[»]
4LNTX-ray2.94RU/YU1-118[»]
4LSKX-ray3.48RU/YU1-118[»]
4LT8X-ray3.14RU/YU1-118[»]
4P6FX-ray3.60RU/YU1-118[»]
4P70X-ray3.68RU/YU1-118[»]
4TUAX-ray3.60RU/YU1-118[»]
4TUBX-ray3.60RU/YU1-118[»]
4TUCX-ray3.60RU/YU1-118[»]
4TUDX-ray3.60RU/YU1-118[»]
4TUEX-ray3.50RU/YU1-118[»]
4V4PX-ray5.5011-116[»]
4V4XX-ray5.00BT1-118[»]
4V4YX-ray5.50BT1-118[»]
4V4ZX-ray4.51BT1-118[»]
4V51X-ray2.80BU/DU2-118[»]
4V5AX-ray3.50BU/DU2-118[»]
4V5CX-ray3.30BU/DU1-118[»]
4V5DX-ray3.50BU/DU1-118[»]
4V5EX-ray3.45BU/DU1-118[»]
4V5FX-ray3.60BU/DU1-118[»]
4V5GX-ray3.60BU/DU1-118[»]
4V5JX-ray3.10BU/DU1-118[»]
4V5KX-ray3.20BU/DU1-118[»]
4V5LX-ray3.10BU1-118[»]
4V5Melectron microscopy7.80BU1-118[»]
4V5Nelectron microscopy7.60BU1-118[»]
4V5PX-ray3.10BU/DU1-118[»]
4V5QX-ray3.10BU/DU1-118[»]
4V5RX-ray3.10BU/DU1-118[»]
4V5SX-ray3.10BU/DU1-118[»]
4V68electron microscopy6.40BU2-118[»]
4V6AX-ray3.10BU/DU1-118[»]
4V6FX-ray3.10A1/D11-118[»]
4V6GX-ray3.50B1/D11-118[»]
4V7JX-ray3.30AU/BU1-118[»]
4V7KX-ray3.60AU/BU1-118[»]
4V7LX-ray3.00BU/DU1-118[»]
4V7MX-ray3.45BU/DU1-118[»]
4V7WX-ray3.00BU/DU1-118[»]
4V7XX-ray3.00BU/DU1-118[»]
4V7YX-ray3.00BU/DU1-118[»]
4V7ZX-ray3.10BU/DU1-118[»]
4V87X-ray3.10A1/D12-118[»]
4V8AX-ray3.20AU/BU1-118[»]
4V8BX-ray3.00B1/D11-118[»]
4V8CX-ray3.30A1/B11-118[»]
4V8DX-ray3.00B1/D11-118[»]
4V8EX-ray3.30A1/C11-118[»]
4V8FX-ray3.30A1/D11-118[»]
4V8GX-ray3.00BU/DU1-118[»]
4V8HX-ray3.10BU/DU1-118[»]
4V8IX-ray2.70BU/DU1-118[»]
4V8JX-ray3.90BU/DU1-118[»]
4V8NX-ray3.10BU/DU1-118[»]
4V8OX-ray3.80BU1-118[»]
4V8QX-ray3.10AU1-118[»]
4V8UX-ray3.70BU/DU1-118[»]
4V8XX-ray3.35BU/DU1-118[»]
4V90X-ray2.95BU2-118[»]
4V95X-ray3.20BU/DU1-118[»]
4V97X-ray3.52BU/DU1-118[»]
4V9AX-ray3.30B1/D11-118[»]
4V9BX-ray3.10B1/D11-118[»]
4V9HX-ray2.86BU1-118[»]
4V9IX-ray3.30BU/DU2-118[»]
4V9RX-ray3.00BU/DU1-118[»]
4V9SX-ray3.10BU/DU1-118[»]
4W2EX-ray2.90U1-118[»]
4W2FX-ray2.40BU/DU1-118[»]
4W2GX-ray2.55BU/DU1-118[»]
4W2HX-ray2.70BU/DU1-118[»]
4W2IX-ray2.70BU/DU1-118[»]
4W4GX-ray3.30RU/YU1-118[»]
4WPOX-ray2.80AU/CU1-118[»]
4WQ1X-ray3.1085/C82-118[»]
4WQFX-ray2.80AU/CU1-118[»]
4WQRX-ray3.1585/C81-118[»]
4WQUX-ray2.80AU/CU1-118[»]
4WQYX-ray2.80AU/CU1-118[»]
4WR6X-ray3.0585/C81-118[»]
4WRAX-ray3.0585/C81-118[»]
4WROX-ray3.05C81-118[»]
4WSDX-ray2.9585/C81-118[»]
4WSMX-ray3.3085/C81-118[»]
4WT1X-ray3.0585/C81-118[»]
4WT8X-ray3.40CT/DT2-118[»]
4WU1X-ray3.2085/C81-118[»]
4WZDX-ray3.1085/C81-118[»]
4WZOX-ray3.3085/C81-118[»]
4Y4OX-ray2.301U/2U1-118[»]
4Y4PX-ray2.501U/2U1-118[»]
4YPBX-ray3.40RU/YU1-118[»]
4YZVX-ray3.10RU/YU1-118[»]
4Z3SX-ray2.651U/2U1-118[»]
4Z8CX-ray2.901U/2U1-118[»]
4ZERX-ray3.101U/2U2-117[»]
4ZSNX-ray3.60RU/YU1-118[»]
5A9Zelectron microscopy4.70AR2-118[»]
5AA0electron microscopy5.00AR2-118[»]
5CZPX-ray3.30RU/YU1-118[»]
5D8BX-ray3.63KB/O1-118[»]
5DFEX-ray3.10RU/YU1-118[»]
5DOXX-ray3.101U/2U1-118[»]
5DOYX-ray2.601U/2U1-118[»]
5E7KX-ray3.2085/C81-118[»]
5E81X-ray2.9585/C81-118[»]
5EL4X-ray3.1585/C81-118[»]
5EL5X-ray3.1585/C81-118[»]
5EL6X-ray3.1085/C81-118[»]
5EL7X-ray3.1585/C81-118[»]
5F8KX-ray2.801U/2U2-117[»]
5FDUX-ray2.901U/2U2-117[»]
5FDVX-ray2.801U/2U2-117[»]
5HAUX-ray3.001S/2S1-118[»]
5HCPX-ray2.891U/2U1-118[»]
5HCQX-ray2.801U/2U1-118[»]
5HCRX-ray2.801U/2U1-118[»]
5HD1X-ray2.701U/2U1-118[»]
5IB7X-ray2.9985/C81-118[»]
5IB8X-ray3.1385/C81-118[»]
5IBBX-ray2.9685/C81-118[»]
5IMQelectron microscopy3.80m1-118[»]
5IMRelectron microscopy-m1-118[»]
5J30X-ray3.20RU/YU1-118[»]
5J3CX-ray3.04RU/YU1-118[»]
5J4BX-ray2.601U/2U1-118[»]
5J4CX-ray2.801U/2U1-118[»]
5J8BX-ray2.60U1-118[»]
5NDKX-ray2.9585/C81-118[»]
5OT7electron microscopy3.80v2-118[»]
5UQ7electron microscopy3.50U2-117[»]
5UQ8electron microscopy3.20U2-117[»]
5VP2X-ray2.801U/2U1-118[»]
5W4KX-ray2.701U/2U1-118[»]
5WISX-ray2.701U/2U1-118[»]
5WITX-ray2.601U/2U1-118[»]
ProteinModelPortaliP60491
SMRiP60491
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60491

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108YZX Bacteria
COG0292 LUCA
HOGENOMiHOG000035046
KOiK02887
OMAiDLAMNHP
PhylomeDBiP60491

Family and domain databases

CDDicd07026 Ribosomal_L20, 1 hit
Gene3Di1.10.1900.20, 1 hit
HAMAPiMF_00382 Ribosomal_L20, 1 hit
InterProiView protein in InterPro
IPR005813 Ribosomal_L20
IPR035566 Ribosomal_protein_L20_C
PANTHERiPTHR10986 PTHR10986, 1 hit
PfamiView protein in Pfam
PF00453 Ribosomal_L20, 1 hit
PRINTSiPR00062 RIBOSOMALL20
SUPFAMiSSF74731 SSF74731, 1 hit
TIGRFAMsiTIGR01032 rplT_bact, 1 hit
PROSITEiView protein in PROSITE
PS00937 RIBOSOMAL_L20, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P60491-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR
60 70 80 90 100
KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV
110
REPQVFAELV ERAKAAQG
Length:118
Mass (Da):13,743
Last modified:January 23, 2007 - v3
Checksum:iA5A8B028B15145F7
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti25W → WV AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 13612 Da from positions 2 - 118. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD70376.1
RefSeqiWP_011172639.1, NC_006461.1
YP_143819.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD70376; BAD70376; BAD70376
GeneIDi3169980
KEGGittj:TTHA0553
PATRICifig|300852.9.peg.552

Similar proteinsi

Entry informationi

Entry nameiRL20_THET8
AccessioniPrimary (citable) accession number: P60491
Secondary accession number(s): Q5SKU0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: January 23, 2007
Last modified: April 25, 2018
This is version 120 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health