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P60490

- RL19_THET8

UniProt

P60490 - RL19_THET8

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Protein
50S ribosomal protein L19
Gene
rplS, TTHA1031
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Contacts the 16S rRNA of the 30S subunit (part of bridge B6), connecting the 2 subunits.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1063-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L19
Gene namesi
Name:rplS
Ordered Locus Names:TTHA1031
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14614650S ribosomal protein L19UniRule annotation
PRO_0000163558Add
BLAST

Interactioni

Subunit structurei

Part of the 50S risobomal subunit. Contacts protein L14. Forms a bridge to the 30S subunit in the 70S ribosome, contacting the 16S rRNA.1 Publication

Protein-protein interaction databases

STRINGi300852.TTHA1031.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 1210
Beta strandi17 – 193
Beta strandi23 – 253
Beta strandi27 – 359
Beta strandi36 – 394
Beta strandi40 – 5314
Helixi56 – 583
Beta strandi60 – 678
Beta strandi70 – 778
Beta strandi78 – 814
Beta strandi83 – 908
Beta strandi95 – 973
Helixi100 – 1045
Helixi107 – 1137
Beta strandi114 – 1163
Helixi118 – 1258
Turni130 – 1334
Turni134 – 1363

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50R1-146[»]
1YL3X-ray5.50R1-146[»]
2HGJX-ray5.00S1-146[»]
2HGQX-ray5.50S1-146[»]
2HGUX-ray4.51S1-146[»]
2J01X-ray2.80T1-146[»]
2J03X-ray2.80T1-146[»]
2V47X-ray3.80T1-146[»]
2V49X-ray3.80T1-146[»]
2WDIX-ray3.30T1-146[»]
2WDJX-ray3.30T1-146[»]
2WDLX-ray3.50T1-146[»]
2WDNX-ray3.50T1-146[»]
2WH2X-ray3.45T1-146[»]
2WH4X-ray3.45T1-146[»]
2WRJX-ray3.60T1-146[»]
2WRLX-ray3.60T1-146[»]
2WROX-ray3.60T1-146[»]
2WRRX-ray3.60T1-146[»]
2X9SX-ray3.10T1-146[»]
2X9UX-ray3.10T1-146[»]
2XG0X-ray3.20T1-146[»]
2XG2X-ray3.20T1-146[»]
2XQEX-ray3.10T1-146[»]
2XTGelectron microscopy7.80T1-146[»]
2XUXelectron microscopy7.60T1-146[»]
2Y0VX-ray3.10T1-146[»]
2Y0XX-ray3.10T1-146[»]
2Y0ZX-ray3.10T1-146[»]
2Y11X-ray3.10T1-146[»]
2Y13X-ray3.10T1-146[»]
2Y15X-ray3.10T1-146[»]
2Y17X-ray3.10T1-146[»]
2Y19X-ray3.10T1-146[»]
3FINelectron microscopy6.40T1-138[»]
3HUXX-ray3.10T1-146[»]
3HUZX-ray3.10T1-146[»]
3I8FX-ray3.10R1-146[»]
3I8IX-ray3.10R1-146[»]
3I9CX-ray3.50R1-146[»]
3I9EX-ray3.50R1-146[»]
3KIRX-ray3.30T1-146[»]
3KITX-ray3.30T1-146[»]
3KIWX-ray3.60T1-146[»]
3KIYX-ray3.60T1-146[»]
3KNIX-ray3.00T1-146[»]
3KNKX-ray3.00T1-146[»]
3KNMX-ray3.45T1-146[»]
3KNOX-ray3.45T1-146[»]
3OH7X-ray3.00T1-146[»]
3OI3X-ray3.10T1-146[»]
3OI5X-ray3.10T1-146[»]
3TVEX-ray3.10R1-137[»]
3TVHX-ray3.10R1-137[»]
3UXQX-ray3.20T1-146[»]
3UXRX-ray3.20T1-146[»]
3UYEX-ray3.00R1-146[»]
3UYGX-ray3.00R1-146[»]
3UZ1X-ray3.30R1-146[»]
3UZ2X-ray3.30R1-146[»]
3UZ8X-ray3.00R1-146[»]
3UZ9X-ray3.00R1-146[»]
3UZFX-ray3.30R1-146[»]
3UZHX-ray3.30R1-146[»]
3UZKX-ray3.30R1-146[»]
3UZNX-ray3.30R1-146[»]
3V23X-ray3.00T1-146[»]
3V25X-ray3.00T1-146[»]
3V27X-ray3.10T1-146[»]
3V29X-ray3.10T1-146[»]
3V2DX-ray2.70T1-146[»]
3V2FX-ray2.70T1-146[»]
3V6WX-ray3.90T1-146[»]
3V6XX-ray3.90T1-146[»]
3ZN9X-ray3.10T1-146[»]
3ZNEX-ray3.10T1-146[»]
3ZVPX-ray3.80T1-146[»]
4ABSX-ray3.10T1-146[»]
4B8GX-ray3.70T1-146[»]
4B8IX-ray3.70T1-146[»]
4BTDX-ray2.95T1-146[»]
4BYCX-ray3.35T1-146[»]
4BYEX-ray3.35T1-146[»]
4DHAX-ray3.20T1-146[»]
4DHCX-ray3.20T1-146[»]
4EJBX-ray3.52T1-146[»]
4EJCX-ray3.52T1-146[»]
4G5LX-ray3.30R1-146[»]
4G5NX-ray3.30R1-146[»]
4G5UX-ray3.10R1-146[»]
4G5WX-ray3.10R1-146[»]
4JUXX-ray2.86T1-146[»]
4K0MX-ray3.30T1-137[»]
4K0QX-ray3.30T1-137[»]
4NVVX-ray3.00T1-146[»]
4NVXX-ray3.00T1-146[»]
4NVZX-ray3.10T1-146[»]
4NW1X-ray3.10T1-146[»]
ProteinModelPortaliP60490.
SMRiP60490. Positions 1-137.

Miscellaneous databases

EvolutionaryTraceiP60490.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0335.
HOGENOMiHOG000016265.
KOiK02884.
OMAiKRIDQDR.
OrthoDBiEOG6DZF5W.
PhylomeDBiP60490.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60490-1 [UniParc]FASTAAdd to Basket

« Hide

MNRGALIKLV ESRYVRTDLP EFRPGDTVRV SYKVKEGNRT RIQDFEGIVI    50
RIRRNGFNTT FTVRKVSYGV GVERIFPLHS PLIQKIDIVQ RGRARRAKLY 100
FIRNLSDREI RRKLRADRKR IDQDRAAERA AKEEAQKAQE PKASQE 146
Length:146
Mass (Da):17,152
Last modified:March 29, 2005 - v2
Checksum:i119CC349889AF6A7
GO

Mass spectrometryi

Molecular mass is 17152 Da from positions 1 - 146. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70854.1.
RefSeqiYP_144297.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70854; BAD70854; BAD70854.
GeneIDi3168297.
KEGGittj:TTHA1031.
PATRICi23957022. VBITheThe93045_1011.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70854.1 .
RefSeqi YP_144297.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 R 1-146 [» ]
1YL3 X-ray 5.50 R 1-146 [» ]
2HGJ X-ray 5.00 S 1-146 [» ]
2HGQ X-ray 5.50 S 1-146 [» ]
2HGU X-ray 4.51 S 1-146 [» ]
2J01 X-ray 2.80 T 1-146 [» ]
2J03 X-ray 2.80 T 1-146 [» ]
2V47 X-ray 3.80 T 1-146 [» ]
2V49 X-ray 3.80 T 1-146 [» ]
2WDI X-ray 3.30 T 1-146 [» ]
2WDJ X-ray 3.30 T 1-146 [» ]
2WDL X-ray 3.50 T 1-146 [» ]
2WDN X-ray 3.50 T 1-146 [» ]
2WH2 X-ray 3.45 T 1-146 [» ]
2WH4 X-ray 3.45 T 1-146 [» ]
2WRJ X-ray 3.60 T 1-146 [» ]
2WRL X-ray 3.60 T 1-146 [» ]
2WRO X-ray 3.60 T 1-146 [» ]
2WRR X-ray 3.60 T 1-146 [» ]
2X9S X-ray 3.10 T 1-146 [» ]
2X9U X-ray 3.10 T 1-146 [» ]
2XG0 X-ray 3.20 T 1-146 [» ]
2XG2 X-ray 3.20 T 1-146 [» ]
2XQE X-ray 3.10 T 1-146 [» ]
2XTG electron microscopy 7.80 T 1-146 [» ]
2XUX electron microscopy 7.60 T 1-146 [» ]
2Y0V X-ray 3.10 T 1-146 [» ]
2Y0X X-ray 3.10 T 1-146 [» ]
2Y0Z X-ray 3.10 T 1-146 [» ]
2Y11 X-ray 3.10 T 1-146 [» ]
2Y13 X-ray 3.10 T 1-146 [» ]
2Y15 X-ray 3.10 T 1-146 [» ]
2Y17 X-ray 3.10 T 1-146 [» ]
2Y19 X-ray 3.10 T 1-146 [» ]
3FIN electron microscopy 6.40 T 1-138 [» ]
3HUX X-ray 3.10 T 1-146 [» ]
3HUZ X-ray 3.10 T 1-146 [» ]
3I8F X-ray 3.10 R 1-146 [» ]
3I8I X-ray 3.10 R 1-146 [» ]
3I9C X-ray 3.50 R 1-146 [» ]
3I9E X-ray 3.50 R 1-146 [» ]
3KIR X-ray 3.30 T 1-146 [» ]
3KIT X-ray 3.30 T 1-146 [» ]
3KIW X-ray 3.60 T 1-146 [» ]
3KIY X-ray 3.60 T 1-146 [» ]
3KNI X-ray 3.00 T 1-146 [» ]
3KNK X-ray 3.00 T 1-146 [» ]
3KNM X-ray 3.45 T 1-146 [» ]
3KNO X-ray 3.45 T 1-146 [» ]
3OH7 X-ray 3.00 T 1-146 [» ]
3OI3 X-ray 3.10 T 1-146 [» ]
3OI5 X-ray 3.10 T 1-146 [» ]
3TVE X-ray 3.10 R 1-137 [» ]
3TVH X-ray 3.10 R 1-137 [» ]
3UXQ X-ray 3.20 T 1-146 [» ]
3UXR X-ray 3.20 T 1-146 [» ]
3UYE X-ray 3.00 R 1-146 [» ]
3UYG X-ray 3.00 R 1-146 [» ]
3UZ1 X-ray 3.30 R 1-146 [» ]
3UZ2 X-ray 3.30 R 1-146 [» ]
3UZ8 X-ray 3.00 R 1-146 [» ]
3UZ9 X-ray 3.00 R 1-146 [» ]
3UZF X-ray 3.30 R 1-146 [» ]
3UZH X-ray 3.30 R 1-146 [» ]
3UZK X-ray 3.30 R 1-146 [» ]
3UZN X-ray 3.30 R 1-146 [» ]
3V23 X-ray 3.00 T 1-146 [» ]
3V25 X-ray 3.00 T 1-146 [» ]
3V27 X-ray 3.10 T 1-146 [» ]
3V29 X-ray 3.10 T 1-146 [» ]
3V2D X-ray 2.70 T 1-146 [» ]
3V2F X-ray 2.70 T 1-146 [» ]
3V6W X-ray 3.90 T 1-146 [» ]
3V6X X-ray 3.90 T 1-146 [» ]
3ZN9 X-ray 3.10 T 1-146 [» ]
3ZNE X-ray 3.10 T 1-146 [» ]
3ZVP X-ray 3.80 T 1-146 [» ]
4ABS X-ray 3.10 T 1-146 [» ]
4B8G X-ray 3.70 T 1-146 [» ]
4B8I X-ray 3.70 T 1-146 [» ]
4BTD X-ray 2.95 T 1-146 [» ]
4BYC X-ray 3.35 T 1-146 [» ]
4BYE X-ray 3.35 T 1-146 [» ]
4DHA X-ray 3.20 T 1-146 [» ]
4DHC X-ray 3.20 T 1-146 [» ]
4EJB X-ray 3.52 T 1-146 [» ]
4EJC X-ray 3.52 T 1-146 [» ]
4G5L X-ray 3.30 R 1-146 [» ]
4G5N X-ray 3.30 R 1-146 [» ]
4G5U X-ray 3.10 R 1-146 [» ]
4G5W X-ray 3.10 R 1-146 [» ]
4JUX X-ray 2.86 T 1-146 [» ]
4K0M X-ray 3.30 T 1-137 [» ]
4K0Q X-ray 3.30 T 1-137 [» ]
4NVV X-ray 3.00 T 1-146 [» ]
4NVX X-ray 3.00 T 1-146 [» ]
4NVZ X-ray 3.10 T 1-146 [» ]
4NW1 X-ray 3.10 T 1-146 [» ]
ProteinModelPortali P60490.
SMRi P60490. Positions 1-137.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1031.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70854 ; BAD70854 ; BAD70854 .
GeneIDi 3168297.
KEGGi ttj:TTHA1031.
PATRICi 23957022. VBITheThe93045_1011.

Phylogenomic databases

eggNOGi COG0335.
HOGENOMi HOG000016265.
KOi K02884.
OMAi KRIDQDR.
OrthoDBi EOG6DZF5W.
PhylomeDBi P60490.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1063-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60490.

Family and domain databases

HAMAPi MF_00402. Ribosomal_L19.
InterProi IPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view ]
PANTHERi PTHR15680. PTHR15680. 1 hit.
Pfami PF01245. Ribosomal_L19. 1 hit.
[Graphical view ]
PIRSFi PIRSF002191. Ribosomal_L19. 1 hit.
PRINTSi PR00061. RIBOSOMALL19.
SUPFAMi SSF50104. SSF50104. 1 hit.
TIGRFAMsi TIGR01024. rplS_bact. 1 hit.
PROSITEi PS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-29.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME, INTERSUBUNIT BRIDGE FORMATION.

Entry informationi

Entry nameiRL19_THET8
AccessioniPrimary (citable) accession number: P60490
Secondary accession number(s): Q5SJH7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: July 9, 2014
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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