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P60489

- RL16_THET8

UniProt

P60489 - RL16_THET8

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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

This protein binds directly to 23S rRNA. Interacts with the A site tRNA.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1724-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16
Gene namesi
Name:rplP
Ordered Locus Names:TTHA1685
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14114150S ribosomal protein L16PRO_0000062237Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1685.

Structurei

Secondary structure

1
141
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 84Combined sources
Beta strandi19 – 213Combined sources
Beta strandi22 – 243Combined sources
Beta strandi29 – 3810Combined sources
Beta strandi40 – 434Combined sources
Helixi44 – 5815Combined sources
Beta strandi59 – 613Combined sources
Beta strandi63 – 664Combined sources
Beta strandi72 – 765Combined sources
Beta strandi78 – 803Combined sources
Beta strandi83 – 853Combined sources
Beta strandi89 – 979Combined sources
Beta strandi102 – 1098Combined sources
Helixi111 – 12414Combined sources
Beta strandi125 – 1273Combined sources
Beta strandi129 – 1335Combined sources
Helixi135 – 1395Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50P1-141[»]
1VVMX-ray3.22Q1-141[»]
1VVOX-ray3.22Q1-141[»]
1VVQX-ray3.90Q1-141[»]
1VVSX-ray3.90Q1-141[»]
1VVUX-ray3.90Q1-141[»]
1VVWX-ray3.90Q1-141[»]
1VVYX-ray3.92Q1-141[»]
1VW0X-ray3.92Q1-141[»]
1VX9X-ray2.94Q1-141[»]
1VXJX-ray2.94Q1-141[»]
1VXLX-ray3.48Q1-141[»]
1VXNX-ray3.48Q1-141[»]
1VXQX-ray3.14Q1-141[»]
1VXTX-ray3.14Q1-141[»]
1VY1X-ray3.68Q1-141[»]
1VY3X-ray3.68Q1-141[»]
1WKINMR-A1-141[»]
1YL3X-ray5.50P1-141[»]
2HGJX-ray5.00P1-141[»]
2HGQX-ray5.50P1-140[»]
2HGUX-ray4.51P1-140[»]
2J01X-ray2.80Q1-141[»]
2J03X-ray2.80Q1-141[»]
2V47X-ray3.80Q1-141[»]
2V49X-ray3.80Q1-141[»]
2WDIX-ray3.30Q1-141[»]
2WDJX-ray3.30Q1-141[»]
2WDLX-ray3.50Q1-141[»]
2WDNX-ray3.50Q1-141[»]
2WH2X-ray3.45Q1-141[»]
2WH4X-ray3.45Q1-141[»]
2WRJX-ray3.60Q1-141[»]
2WRLX-ray3.60Q1-141[»]
2WROX-ray3.60Q1-141[»]
2WRRX-ray3.60Q1-141[»]
2X9SX-ray3.10Q1-141[»]
2X9UX-ray3.10Q1-141[»]
2XG0X-ray3.20Q1-141[»]
2XG2X-ray3.20Q1-141[»]
2XQEX-ray3.10Q1-141[»]
2XTGelectron microscopy7.80Q1-141[»]
2XUXelectron microscopy7.60Q1-141[»]
2Y0VX-ray3.10Q1-141[»]
2Y0XX-ray3.10Q1-141[»]
2Y0ZX-ray3.10Q1-141[»]
2Y11X-ray3.10Q1-141[»]
2Y13X-ray3.10Q1-141[»]
2Y15X-ray3.10Q1-141[»]
2Y17X-ray3.10Q1-141[»]
2Y19X-ray3.10Q1-141[»]
3FINelectron microscopy6.40Q6-141[»]
3HUXX-ray3.10Q1-141[»]
3HUZX-ray3.10Q1-141[»]
3I8FX-ray3.10P1-141[»]
3I8IX-ray3.10P1-141[»]
3I9CX-ray3.50P1-141[»]
3I9EX-ray3.50P1-141[»]
3KIRX-ray3.30Q1-141[»]
3KITX-ray3.30Q1-141[»]
3KIWX-ray3.60Q1-141[»]
3KIYX-ray3.60Q1-141[»]
3KNIX-ray3.00Q1-141[»]
3KNKX-ray3.00Q1-141[»]
3KNMX-ray3.45Q1-141[»]
3KNOX-ray3.45Q1-141[»]
3TVEX-ray3.10P1-141[»]
3TVHX-ray3.10P1-141[»]
3UXQX-ray3.20Q1-141[»]
3UXRX-ray3.20Q1-141[»]
3UYEX-ray3.00P1-141[»]
3UYGX-ray3.00P1-141[»]
3UZ1X-ray3.30P1-141[»]
3UZ2X-ray3.30P1-141[»]
3UZ8X-ray3.00P1-141[»]
3UZ9X-ray3.00P1-141[»]
3UZFX-ray3.30P1-141[»]
3UZHX-ray3.30P1-141[»]
3UZKX-ray3.30P1-141[»]
3UZNX-ray3.30P1-141[»]
3V23X-ray3.00Q1-141[»]
3V25X-ray3.00Q1-141[»]
3V27X-ray3.10Q1-141[»]
3V29X-ray3.10Q1-141[»]
3V2DX-ray2.70Q1-141[»]
3V2FX-ray2.70Q1-141[»]
3V6WX-ray3.90Q1-141[»]
3V6XX-ray3.90Q1-141[»]
3ZN9X-ray3.10Q1-141[»]
3ZNEX-ray3.10Q1-141[»]
3ZVPX-ray3.80Q1-141[»]
4ABSX-ray3.10Q1-141[»]
4B8GX-ray3.70Q1-141[»]
4B8IX-ray3.70Q1-141[»]
4BTDX-ray2.95Q1-141[»]
4BYCX-ray3.35Q1-141[»]
4BYEX-ray3.35Q1-141[»]
4DHAX-ray3.20Q1-141[»]
4DHCX-ray3.20Q1-141[»]
4EJBX-ray3.52Q1-141[»]
4EJCX-ray3.52Q1-141[»]
4G5LX-ray3.30P1-141[»]
4G5NX-ray3.30P1-141[»]
4G5UX-ray3.10P1-141[»]
4G5WX-ray3.10P1-141[»]
4JUXX-ray2.86Q1-141[»]
4K0MX-ray3.30Q1-141[»]
4K0QX-ray3.30Q1-141[»]
4KX0X-ray3.44Q1-141[»]
4KX2X-ray3.44Q1-141[»]
4NVVX-ray3.00Q1-141[»]
4NVXX-ray3.00Q1-141[»]
4NVZX-ray3.10Q1-141[»]
4NW1X-ray3.10Q1-141[»]
4QCNX-ray2.60Q1-141[»]
4QCPX-ray2.60Q1-141[»]
4QCRX-ray2.55Q1-141[»]
4QCTX-ray2.55Q1-141[»]
4QCVX-ray2.90Q1-141[»]
4QCXX-ray2.90Q1-141[»]
4QCZX-ray2.80Q1-141[»]
4QD1X-ray2.80Q1-141[»]
ProteinModelPortaliP60489.
SMRiP60489. Positions 1-141.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60489.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.Curated

Phylogenomic databases

eggNOGiCOG0197.
HOGENOMiHOG000164573.
KOiK02878.
OMAiLKTTFVT.
OrthoDBiEOG6WHNWS.
PhylomeDBiP60489.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

P60489-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DYGLVALEPA WITAQQIEAA
60 70 80 90 100
RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG
110 120 130 140
RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q
Length:141
Mass (Da):15,963
Last modified:March 29, 2005 - v2
Checksum:i046579FBF9158EB2
GO

Mass spectrometryi

Molecular mass is 15962 Da from positions 1 - 141. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71508.1.
RefSeqiWP_011228846.1. NC_006461.1.
YP_144951.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71508; BAD71508; BAD71508.
GeneIDi3168285.
KEGGittj:TTHA1685.
PATRICi23958325. VBITheThe93045_1655.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71508.1 .
RefSeqi WP_011228846.1. NC_006461.1.
YP_144951.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 P 1-141 [» ]
1VVM X-ray 3.22 Q 1-141 [» ]
1VVO X-ray 3.22 Q 1-141 [» ]
1VVQ X-ray 3.90 Q 1-141 [» ]
1VVS X-ray 3.90 Q 1-141 [» ]
1VVU X-ray 3.90 Q 1-141 [» ]
1VVW X-ray 3.90 Q 1-141 [» ]
1VVY X-ray 3.92 Q 1-141 [» ]
1VW0 X-ray 3.92 Q 1-141 [» ]
1VX9 X-ray 2.94 Q 1-141 [» ]
1VXJ X-ray 2.94 Q 1-141 [» ]
1VXL X-ray 3.48 Q 1-141 [» ]
1VXN X-ray 3.48 Q 1-141 [» ]
1VXQ X-ray 3.14 Q 1-141 [» ]
1VXT X-ray 3.14 Q 1-141 [» ]
1VY1 X-ray 3.68 Q 1-141 [» ]
1VY3 X-ray 3.68 Q 1-141 [» ]
1WKI NMR - A 1-141 [» ]
1YL3 X-ray 5.50 P 1-141 [» ]
2HGJ X-ray 5.00 P 1-141 [» ]
2HGQ X-ray 5.50 P 1-140 [» ]
2HGU X-ray 4.51 P 1-140 [» ]
2J01 X-ray 2.80 Q 1-141 [» ]
2J03 X-ray 2.80 Q 1-141 [» ]
2V47 X-ray 3.80 Q 1-141 [» ]
2V49 X-ray 3.80 Q 1-141 [» ]
2WDI X-ray 3.30 Q 1-141 [» ]
2WDJ X-ray 3.30 Q 1-141 [» ]
2WDL X-ray 3.50 Q 1-141 [» ]
2WDN X-ray 3.50 Q 1-141 [» ]
2WH2 X-ray 3.45 Q 1-141 [» ]
2WH4 X-ray 3.45 Q 1-141 [» ]
2WRJ X-ray 3.60 Q 1-141 [» ]
2WRL X-ray 3.60 Q 1-141 [» ]
2WRO X-ray 3.60 Q 1-141 [» ]
2WRR X-ray 3.60 Q 1-141 [» ]
2X9S X-ray 3.10 Q 1-141 [» ]
2X9U X-ray 3.10 Q 1-141 [» ]
2XG0 X-ray 3.20 Q 1-141 [» ]
2XG2 X-ray 3.20 Q 1-141 [» ]
2XQE X-ray 3.10 Q 1-141 [» ]
2XTG electron microscopy 7.80 Q 1-141 [» ]
2XUX electron microscopy 7.60 Q 1-141 [» ]
2Y0V X-ray 3.10 Q 1-141 [» ]
2Y0X X-ray 3.10 Q 1-141 [» ]
2Y0Z X-ray 3.10 Q 1-141 [» ]
2Y11 X-ray 3.10 Q 1-141 [» ]
2Y13 X-ray 3.10 Q 1-141 [» ]
2Y15 X-ray 3.10 Q 1-141 [» ]
2Y17 X-ray 3.10 Q 1-141 [» ]
2Y19 X-ray 3.10 Q 1-141 [» ]
3FIN electron microscopy 6.40 Q 6-141 [» ]
3HUX X-ray 3.10 Q 1-141 [» ]
3HUZ X-ray 3.10 Q 1-141 [» ]
3I8F X-ray 3.10 P 1-141 [» ]
3I8I X-ray 3.10 P 1-141 [» ]
3I9C X-ray 3.50 P 1-141 [» ]
3I9E X-ray 3.50 P 1-141 [» ]
3KIR X-ray 3.30 Q 1-141 [» ]
3KIT X-ray 3.30 Q 1-141 [» ]
3KIW X-ray 3.60 Q 1-141 [» ]
3KIY X-ray 3.60 Q 1-141 [» ]
3KNI X-ray 3.00 Q 1-141 [» ]
3KNK X-ray 3.00 Q 1-141 [» ]
3KNM X-ray 3.45 Q 1-141 [» ]
3KNO X-ray 3.45 Q 1-141 [» ]
3TVE X-ray 3.10 P 1-141 [» ]
3TVH X-ray 3.10 P 1-141 [» ]
3UXQ X-ray 3.20 Q 1-141 [» ]
3UXR X-ray 3.20 Q 1-141 [» ]
3UYE X-ray 3.00 P 1-141 [» ]
3UYG X-ray 3.00 P 1-141 [» ]
3UZ1 X-ray 3.30 P 1-141 [» ]
3UZ2 X-ray 3.30 P 1-141 [» ]
3UZ8 X-ray 3.00 P 1-141 [» ]
3UZ9 X-ray 3.00 P 1-141 [» ]
3UZF X-ray 3.30 P 1-141 [» ]
3UZH X-ray 3.30 P 1-141 [» ]
3UZK X-ray 3.30 P 1-141 [» ]
3UZN X-ray 3.30 P 1-141 [» ]
3V23 X-ray 3.00 Q 1-141 [» ]
3V25 X-ray 3.00 Q 1-141 [» ]
3V27 X-ray 3.10 Q 1-141 [» ]
3V29 X-ray 3.10 Q 1-141 [» ]
3V2D X-ray 2.70 Q 1-141 [» ]
3V2F X-ray 2.70 Q 1-141 [» ]
3V6W X-ray 3.90 Q 1-141 [» ]
3V6X X-ray 3.90 Q 1-141 [» ]
3ZN9 X-ray 3.10 Q 1-141 [» ]
3ZNE X-ray 3.10 Q 1-141 [» ]
3ZVP X-ray 3.80 Q 1-141 [» ]
4ABS X-ray 3.10 Q 1-141 [» ]
4B8G X-ray 3.70 Q 1-141 [» ]
4B8I X-ray 3.70 Q 1-141 [» ]
4BTD X-ray 2.95 Q 1-141 [» ]
4BYC X-ray 3.35 Q 1-141 [» ]
4BYE X-ray 3.35 Q 1-141 [» ]
4DHA X-ray 3.20 Q 1-141 [» ]
4DHC X-ray 3.20 Q 1-141 [» ]
4EJB X-ray 3.52 Q 1-141 [» ]
4EJC X-ray 3.52 Q 1-141 [» ]
4G5L X-ray 3.30 P 1-141 [» ]
4G5N X-ray 3.30 P 1-141 [» ]
4G5U X-ray 3.10 P 1-141 [» ]
4G5W X-ray 3.10 P 1-141 [» ]
4JUX X-ray 2.86 Q 1-141 [» ]
4K0M X-ray 3.30 Q 1-141 [» ]
4K0Q X-ray 3.30 Q 1-141 [» ]
4KX0 X-ray 3.44 Q 1-141 [» ]
4KX2 X-ray 3.44 Q 1-141 [» ]
4NVV X-ray 3.00 Q 1-141 [» ]
4NVX X-ray 3.00 Q 1-141 [» ]
4NVZ X-ray 3.10 Q 1-141 [» ]
4NW1 X-ray 3.10 Q 1-141 [» ]
4QCN X-ray 2.60 Q 1-141 [» ]
4QCP X-ray 2.60 Q 1-141 [» ]
4QCR X-ray 2.55 Q 1-141 [» ]
4QCT X-ray 2.55 Q 1-141 [» ]
4QCV X-ray 2.90 Q 1-141 [» ]
4QCX X-ray 2.90 Q 1-141 [» ]
4QCZ X-ray 2.80 Q 1-141 [» ]
4QD1 X-ray 2.80 Q 1-141 [» ]
ProteinModelPortali P60489.
SMRi P60489. Positions 1-141.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1685.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71508 ; BAD71508 ; BAD71508 .
GeneIDi 3168285.
KEGGi ttj:TTHA1685.
PATRICi 23958325. VBITheThe93045_1655.

Phylogenomic databases

eggNOGi COG0197.
HOGENOMi HOG000164573.
KOi K02878.
OMAi LKTTFVT.
OrthoDBi EOG6WHNWS.
PhylomeDBi P60489.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1724-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60489.

Family and domain databases

Gene3Di 3.90.1170.10. 1 hit.
HAMAPi MF_01342. Ribosomal_L16.
InterProi IPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view ]
PANTHERi PTHR12220. PTHR12220. 1 hit.
Pfami PF00252. Ribosomal_L16. 1 hit.
[Graphical view ]
PRINTSi PR00060. RIBOSOMALL16.
SUPFAMi SSF54686. SSF54686. 1 hit.
TIGRFAMsi TIGR01164. rplP_bact. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-21.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL16_THET8
AccessioniPrimary (citable) accession number: P60489
Secondary accession number(s): Q5SHP5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: October 29, 2014
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3