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P60489 (RL16_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L16
Gene names
Name:rplP
Ordered Locus Names:TTHA1685
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein binds directly to 23S rRNA. Interacts with the A site tRNA. HAMAP MF_01342

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L16P family.

Mass spectrometry

Molecular mass is 15962 Da from positions 1 - 141. Determined by MALDI. Ref.3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14114150S ribosomal protein L16 HAMAP MF_01342
PRO_0000062237

Secondary structure

1 ................ 141
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P60489 [UniParc].

Last modified March 29, 2005. Version 2.
Checksum: 046579FBF9158EB2

FASTA14115,963
        10         20         30         40         50         60 
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DYGLVALEPA WITAQQIEAA RVAMVRHFRR 

        70         80         90        100        110        120 
GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG RVMFEVAGVT EEQAMEALRI 

       130        140 
AGHKLPIKTK IVRRDAYDEA Q

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed: 11154066] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-21.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed: 16287167] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed: 11511350] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed: 11283358] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD71508.1.
RefSeqYP_144951.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50P1-141[»]
1WKINMR-A1-141[»]
1YL3X-ray5.50P1-141[»]
2HGJX-ray5.00P1-141[»]
2HGQX-ray5.50P1-140[»]
2HGUX-ray4.51P1-140[»]
2J01X-ray2.80Q1-141[»]
2J03X-ray2.80Q1-141[»]
2V47X-ray3.80Q1-141[»]
2V49X-ray3.80Q1-141[»]
2WDIX-ray3.30Q1-141[»]
2WDJX-ray3.30Q1-141[»]
2WDLX-ray3.50Q1-141[»]
2WDNX-ray3.50Q1-141[»]
2WH2X-ray3.45Q1-141[»]
2WH4X-ray3.45Q1-141[»]
2WRJX-ray3.60Q1-141[»]
2WRLX-ray3.60Q1-141[»]
2WROX-ray3.60Q1-141[»]
2WRRX-ray3.60Q1-141[»]
2X9SX-ray3.10Q1-141[»]
2X9UX-ray3.10Q1-141[»]
2XG0X-ray3.20Q1-141[»]
2XG2X-ray3.20Q1-141[»]
2XQEX-ray3.10Q1-141[»]
2XTGelectron microscopy7.80Q1-141[»]
2XUXelectron microscopy7.60Q1-141[»]
2Y0VX-ray3.10Q1-141[»]
2Y0XX-ray3.10Q1-141[»]
2Y0ZX-ray3.10Q1-141[»]
2Y11X-ray3.10Q1-141[»]
2Y13X-ray3.10Q1-141[»]
2Y15X-ray3.10Q1-141[»]
2Y17X-ray3.10Q1-141[»]
2Y19X-ray3.10Q1-141[»]
3FINelectron microscopy6.40Q6-141[»]
3HUXX-ray3.10Q1-141[»]
3HUZX-ray3.10Q1-141[»]
3I8FX-ray3.10P1-141[»]
3I8IX-ray3.10P1-141[»]
3I9CX-ray3.50P1-141[»]
3I9EX-ray3.50P1-141[»]
3KIRX-ray3.30Q1-141[»]
3KITX-ray3.30Q1-141[»]
3KIWX-ray3.60Q1-141[»]
3KIYX-ray3.60Q1-141[»]
3KNIX-ray3.00Q1-141[»]
3KNKX-ray3.00Q1-141[»]
3KNMX-ray3.45Q1-141[»]
3KNOX-ray3.45Q1-141[»]
3ZVPX-ray3.80Q1-141[»]
ProteinModelPortalP60489.
SMRP60489. Positions 1-141.
ModBaseSearch...

Protein-protein interaction databases

STRINGP60489.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3168285.
GenomeReviewsGene locus TTHA1685 in contig AP008226_GR.
KEGGttj:TTHA1685.
NMPDRfig|300852.3.peg.749.
PATRIC23958325. VBITheThe93045_1655.

Phylogenomic databases

eggNOGCOG0197.
HOGENOMHBG286097.
OMAKGSPEFW.
PhylomeDBP60489.
ProtClustDBPRK09203.

Enzyme and pathway databases

BioCycTTHE300852:TTHA1685-MONOMER.

Family and domain databases

HAMAPMF_01342. Ribosomal_L16.
[Tree]
InterProIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
[Graphical view]
KOK02878.
PANTHERPTHR12220. Ribosomal_L16. 1 hit.
PfamPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSPR00060. RIBOSOMALL16.
SUPFAMSSF54686. Ribosomal_L10e/L16. 1 hit.
TIGRFAMsTIGR01164. RplP_bact. 1 hit.
PROSITEPS00586. RIBOSOMAL_L16_1. False negative.
PS00701. RIBOSOMAL_L16_2. False negative.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL16_THET8
AccessionPrimary (citable) accession number: P60489
Secondary accession number(s): Q5SHP5
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: January 25, 2012
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents