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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This protein binds directly to 23S rRNA. Interacts with the A site tRNA.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16
Gene namesi
Name:rplP
Ordered Locus Names:TTHA1685
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000622371 – 14150S ribosomal protein L16Add BLAST141

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1685.

Structurei

Secondary structure

1141
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi18 – 20Combined sources3
Beta strandi29 – 38Combined sources10
Beta strandi40 – 43Combined sources4
Helixi44 – 57Combined sources14
Beta strandi84 – 86Combined sources3
Beta strandi93 – 97Combined sources5
Beta strandi101 – 104Combined sources4
Beta strandi106 – 109Combined sources4
Helixi111 – 123Combined sources13
Beta strandi125 – 127Combined sources3
Beta strandi129 – 133Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RQ/YQ1-141[»]
1VY4X-ray2.60BQ/DQ1-141[»]
1VY5X-ray2.55BQ/DQ1-141[»]
1VY6X-ray2.90BQ/DQ1-141[»]
1VY7X-ray2.80BQ/DQ1-141[»]
1WKINMR-A1-141[»]
4L47X-ray3.22RQ/YQ1-141[»]
4L71X-ray3.90RQ/YQ1-141[»]
4LELX-ray3.90RQ/YQ1-141[»]
4LFZX-ray3.92RQ/YQ1-141[»]
4LNTX-ray2.94RQ/YQ1-141[»]
4LSKX-ray3.48RQ/YQ1-141[»]
4LT8X-ray3.14RQ/YQ1-141[»]
4P6FX-ray3.60RQ/YQ1-141[»]
4P70X-ray3.68RQ/YQ1-141[»]
4TUAX-ray3.60RQ/YQ1-141[»]
4TUBX-ray3.60RQ/YQ1-141[»]
4TUCX-ray3.60RQ/YQ1-141[»]
4TUDX-ray3.60RQ/YQ1-141[»]
4TUEX-ray3.50RQ/YQ1-141[»]
4V42X-ray5.50P1-141[»]
4V4PX-ray5.50P1-141[»]
4V4XX-ray5.00BP1-141[»]
4V4YX-ray5.50BP1-140[»]
4V4ZX-ray4.51BP1-140[»]
4V51X-ray2.80BQ/DQ1-141[»]
4V5AX-ray3.50BQ/DQ1-141[»]
4V5CX-ray3.30BQ/DQ1-141[»]
4V5DX-ray3.50BQ/DQ1-141[»]
4V5EX-ray3.45BQ/DQ1-141[»]
4V5FX-ray3.60BQ/DQ1-141[»]
4V5GX-ray3.60BQ/DQ1-141[»]
4V5JX-ray3.10BQ/DQ1-141[»]
4V5KX-ray3.20BQ/DQ1-141[»]
4V5LX-ray3.10BQ1-141[»]
4V5Melectron microscopy7.80BQ1-141[»]
4V5Nelectron microscopy7.60BQ1-141[»]
4V5PX-ray3.10BQ/DQ1-141[»]
4V5QX-ray3.10BQ/DQ1-141[»]
4V5RX-ray3.10BQ/DQ1-141[»]
4V5SX-ray3.10BQ/DQ1-141[»]
4V68electron microscopy6.40BQ6-141[»]
4V6AX-ray3.10BQ/DQ1-141[»]
4V6FX-ray3.10AP/DP1-141[»]
4V6GX-ray3.50BP/DP1-141[»]
4V7JX-ray3.30AQ/BQ1-141[»]
4V7KX-ray3.60AQ/BQ1-141[»]
4V7LX-ray3.00BQ/DQ1-141[»]
4V7MX-ray3.45BQ/DQ1-141[»]
4V7WX-ray3.00BQ/DQ1-141[»]
4V7XX-ray3.00BQ/DQ1-141[»]
4V7YX-ray3.00BQ/DQ1-141[»]
4V7ZX-ray3.10BQ/DQ1-141[»]
4V87X-ray3.10AP/DP1-141[»]
4V8AX-ray3.20AQ/BQ1-141[»]
4V8BX-ray3.00BP/DP1-141[»]
4V8CX-ray3.30AP/BP1-141[»]
4V8DX-ray3.00BP/DP1-141[»]
4V8EX-ray3.30AP/CP1-141[»]
4V8FX-ray3.30AP/DP1-141[»]
4V8GX-ray3.00BQ/DQ1-141[»]
4V8HX-ray3.10BQ/DQ1-141[»]
4V8IX-ray2.70BQ/DQ1-141[»]
4V8JX-ray3.90BQ/DQ1-141[»]
4V8NX-ray3.10BQ/DQ1-141[»]
4V8OX-ray3.80BQ1-141[»]
4V8QX-ray3.10AQ1-141[»]
4V8UX-ray3.70BQ/DQ1-141[»]
4V8XX-ray3.35BQ/DQ1-141[»]
4V90X-ray2.95BQ1-141[»]
4V95X-ray3.20BQ/DQ1-141[»]
4V97X-ray3.52BQ/DQ1-141[»]
4V9AX-ray3.30BP/DP1-141[»]
4V9BX-ray3.10BP/DP1-141[»]
4V9HX-ray2.86BQ1-141[»]
4V9IX-ray3.30BQ/DQ1-141[»]
4V9RX-ray3.00BQ/DQ1-141[»]
4V9SX-ray3.10BQ/DQ1-141[»]
4W2EX-ray2.90Q1-141[»]
4W2FX-ray2.40BQ/DQ1-141[»]
4W2GX-ray2.55BQ/DQ1-141[»]
4W2HX-ray2.70BQ/DQ1-141[»]
4W2IX-ray2.70BQ/DQ1-141[»]
4W4GX-ray3.30RQ/YQ1-141[»]
4WPOX-ray2.80AQ/CQ1-141[»]
4WQ1X-ray3.1045/881-141[»]
4WQFX-ray2.80AQ/CQ1-141[»]
4WQRX-ray3.1545/881-141[»]
4WQUX-ray2.80AQ/CQ1-141[»]
4WQYX-ray2.80AQ/CQ1-141[»]
4WR6X-ray3.0545/881-141[»]
4WRAX-ray3.0545/881-141[»]
4WROX-ray3.05881-141[»]
4WSDX-ray2.9545/881-141[»]
4WSMX-ray3.3045/881-141[»]
4WT1X-ray3.0545/881-141[»]
4WT8X-ray3.40CP/DP1-141[»]
4WU1X-ray3.2045/881-141[»]
4WZDX-ray3.1045/881-141[»]
4WZOX-ray3.3045/881-141[»]
4Y4OX-ray2.301Q/2Q1-141[»]
4Y4PX-ray2.501Q/2Q1-141[»]
4YPBX-ray3.40RQ/YQ1-141[»]
4YZVX-ray3.10RQ/YQ1-141[»]
4Z3SX-ray2.651Q/2Q1-141[»]
4Z8CX-ray2.901Q/2Q1-141[»]
4ZERX-ray3.101Q/2Q1-141[»]
4ZSNX-ray3.60RQ/YQ1-141[»]
5A9Zelectron microscopy4.70AN6-141[»]
5AA0electron microscopy5.00AN6-141[»]
5CZPX-ray3.30RQ/YQ1-141[»]
5D8BX-ray3.63GB/K1-141[»]
5DFEX-ray3.10RQ/YQ1-141[»]
5DOXX-ray3.101Q/2Q1-141[»]
5DOYX-ray2.601Q/2Q1-141[»]
5E7KX-ray3.2045/881-141[»]
5E81X-ray2.9545/881-141[»]
5EL4X-ray3.1545/881-141[»]
5EL5X-ray3.1545/881-141[»]
5EL6X-ray3.1045/881-141[»]
5EL7X-ray3.1545/881-141[»]
5F8KX-ray2.801Q/2Q1-141[»]
5FDUX-ray2.901Q/2Q1-141[»]
5FDVX-ray2.801Q/2Q1-141[»]
5HAUX-ray3.001O/2O1-141[»]
5HCPX-ray2.891Q/2Q1-141[»]
5HCQX-ray2.801Q/2Q1-141[»]
5HCRX-ray2.801Q/2Q1-141[»]
5HD1X-ray2.701Q/2Q1-141[»]
5IB7X-ray2.9945/881-141[»]
5IB8X-ray3.1345/881-141[»]
5IBBX-ray2.9645/881-141[»]
5IMQelectron microscopy3.80i1-141[»]
5IMRelectron microscopy-i1-141[»]
5J30X-ray3.20RQ/YQ1-141[»]
5J3CX-ray3.04RQ/YQ1-141[»]
5J4BX-ray2.601Q/2Q1-141[»]
5J4CX-ray2.801Q/2Q1-141[»]
5J8BX-ray2.60Q1-141[»]
ProteinModelPortaliP60489.
SMRiP60489.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60489.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
HOGENOMiHOG000164573.
KOiK02878.
OMAiKGAVEYW.
PhylomeDBiP60489.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16. 1 hit.
InterProiView protein in InterPro
IPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiView protein in Pfam
PF00252. Ribosomal_L16. 1 hit.
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

P60489-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DYGLVALEPA WITAQQIEAA
60 70 80 90 100
RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG
110 120 130 140
RVMFEVAGVT EEQAMEALRI AGHKLPIKTK IVRRDAYDEA Q
Length:141
Mass (Da):15,963
Last modified:March 29, 2005 - v2
Checksum:i046579FBF9158EB2
GO

Mass spectrometryi

Molecular mass is 15962 Da from positions 1 - 141. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71508.1.
RefSeqiWP_011228846.1. NC_006461.1.
YP_144951.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71508; BAD71508; BAD71508.
GeneIDi3168285.
KEGGittj:TTHA1685.
PATRICifig|300852.9.peg.1655.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL16_THET8
AccessioniPrimary (citable) accession number: P60489
Secondary accession number(s): Q5SHP5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: June 7, 2017
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families