Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P60488

- RL13_THET8

UniProt

P60488 - RL13_THET8

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1501-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:TTHA1465
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14014050S ribosomal protein L13PRO_0000133754Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1465.

Structurei

Secondary structure

1
140
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi13 – 175Combined sources
Beta strandi19 – 224Combined sources
Helixi25 – 3511Combined sources
Turni36 – 383Combined sources
Beta strandi39 – 413Combined sources
Turni44 – 463Combined sources
Beta strandi51 – 555Combined sources
Helixi57 – 593Combined sources
Beta strandi63 – 653Combined sources
Helixi66 – 694Combined sources
Beta strandi71 – 755Combined sources
Beta strandi78 – 803Combined sources
Beta strandi82 – 865Combined sources
Helixi87 – 937Combined sources
Helixi97 – 1059Combined sources
Helixi111 – 1188Combined sources
Beta strandi120 – 1223Combined sources
Beta strandi124 – 1263Combined sources
Helixi131 – 1333Combined sources
Beta strandi136 – 1383Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50M1-140[»]
1VVMX-ray3.22N1-140[»]
1VVOX-ray3.22N1-140[»]
1VVQX-ray3.90N1-140[»]
1VVSX-ray3.90N1-140[»]
1VVUX-ray3.90N1-140[»]
1VVWX-ray3.90N1-140[»]
1VVYX-ray3.92N1-140[»]
1VW0X-ray3.92N1-140[»]
1VX9X-ray2.94N1-140[»]
1VXJX-ray2.94N1-140[»]
1VXLX-ray3.48N1-140[»]
1VXNX-ray3.48N1-140[»]
1VXQX-ray3.14N1-140[»]
1VXTX-ray3.14N1-140[»]
1VY1X-ray3.68N1-140[»]
1VY3X-ray3.68N1-140[»]
1YL3X-ray5.50M1-140[»]
2B9PX-ray6.46N1-140[»]
2HGJX-ray5.00M1-140[»]
2HGQX-ray5.50M1-140[»]
2HGUX-ray4.51M1-140[»]
2J01X-ray2.80N1-140[»]
2J03X-ray2.80N1-140[»]
2V47X-ray3.80N1-140[»]
2V49X-ray3.80N1-140[»]
2WDIX-ray3.30N1-140[»]
2WDJX-ray3.30N1-140[»]
2WDLX-ray3.50N1-140[»]
2WDNX-ray3.50N1-140[»]
2WH2X-ray3.45N1-140[»]
2WH4X-ray3.45N1-140[»]
2WRJX-ray3.60N1-140[»]
2WRLX-ray3.60N1-140[»]
2WROX-ray3.60N1-140[»]
2WRRX-ray3.60N1-140[»]
2X9SX-ray3.10N1-140[»]
2X9UX-ray3.10N1-140[»]
2XG0X-ray3.20N1-140[»]
2XG2X-ray3.20N1-140[»]
2XQEX-ray3.10N1-140[»]
2XTGelectron microscopy7.80N1-140[»]
2XUXelectron microscopy7.60N1-140[»]
2Y0VX-ray3.10N1-140[»]
2Y0XX-ray3.10N1-140[»]
2Y0ZX-ray3.10N1-140[»]
2Y11X-ray3.10N1-140[»]
2Y13X-ray3.10N1-140[»]
2Y15X-ray3.10N1-140[»]
2Y17X-ray3.10N1-140[»]
2Y19X-ray3.10N1-140[»]
3FINelectron microscopy6.40N1-139[»]
3HUXX-ray3.10N1-140[»]
3HUZX-ray3.10N1-140[»]
3I8FX-ray3.10M1-140[»]
3I8IX-ray3.10M1-140[»]
3I9CX-ray3.50M1-140[»]
3I9EX-ray3.50M1-140[»]
3KIRX-ray3.30N1-140[»]
3KITX-ray3.30N1-140[»]
3KIWX-ray3.60N1-140[»]
3KIYX-ray3.60N1-140[»]
3KNIX-ray3.00N1-140[»]
3KNKX-ray3.00N1-140[»]
3KNMX-ray3.45N1-140[»]
3KNOX-ray3.45N1-140[»]
3OHZX-ray3.00N1-140[»]
3OI3X-ray3.10N1-140[»]
3OI5X-ray3.10N1-140[»]
3TVEX-ray3.10M1-138[»]
3TVHX-ray3.10M1-138[»]
3UXQX-ray3.20N1-140[»]
3UXRX-ray3.20N1-140[»]
3UYEX-ray3.00M1-140[»]
3UYGX-ray3.00M1-140[»]
3UZ1X-ray3.30M1-140[»]
3UZ2X-ray3.30M1-140[»]
3UZ8X-ray3.00M1-140[»]
3UZ9X-ray3.00M1-140[»]
3UZFX-ray3.30M1-140[»]
3UZHX-ray3.30M1-140[»]
3UZKX-ray3.30M1-140[»]
3UZNX-ray3.30M1-140[»]
3V23X-ray3.00N1-140[»]
3V25X-ray3.00N1-140[»]
3V27X-ray3.10N1-140[»]
3V29X-ray3.10N1-140[»]
3V2DX-ray2.70N1-140[»]
3V2FX-ray2.70N1-140[»]
3V6WX-ray3.90N1-140[»]
3V6XX-ray3.90N1-140[»]
3ZN9X-ray3.10N1-140[»]
3ZNEX-ray3.10N1-140[»]
3ZVPX-ray3.80N1-140[»]
4ABSX-ray3.10N1-140[»]
4B8GX-ray3.70N1-140[»]
4B8IX-ray3.70N1-140[»]
4BTDX-ray2.95N1-140[»]
4BYCX-ray3.35N1-140[»]
4BYEX-ray3.35N1-140[»]
4DHAX-ray3.20N1-140[»]
4DHCX-ray3.20N1-140[»]
4EJBX-ray3.52N1-140[»]
4EJCX-ray3.52N1-140[»]
4G5LX-ray3.30M1-140[»]
4G5NX-ray3.30M1-140[»]
4G5UX-ray3.10M1-140[»]
4G5WX-ray3.10M1-140[»]
4JUXX-ray2.86N1-140[»]
4K0MX-ray3.30N1-138[»]
4K0QX-ray3.30N1-138[»]
4KX0X-ray3.44N1-140[»]
4KX2X-ray3.44N1-140[»]
4NVVX-ray3.00N1-140[»]
4NVXX-ray3.00N1-140[»]
4NVZX-ray3.10N1-140[»]
4NW1X-ray3.10N1-140[»]
4QCNX-ray2.60N1-140[»]
4QCPX-ray2.60N1-140[»]
4QCRX-ray2.55N1-140[»]
4QCTX-ray2.55N1-140[»]
4QCVX-ray2.90N1-140[»]
4QCXX-ray2.90N1-140[»]
4QCZX-ray2.80N1-140[»]
4QD1X-ray2.80N1-140[»]
ProteinModelPortaliP60488.
SMRiP60488. Positions 2-140.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60488.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0102.
HOGENOMiHOG000225286.
KOiK02871.
OMAiGIKETNF.
OrthoDBiEOG628FBD.
PhylomeDBiP60488.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60488-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD
60 70 80 90 100
FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE
110 120 130 140
HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV
Length:140
Mass (Da):15,895
Last modified:March 29, 2005 - v2
Checksum:i657212AE35E6F502
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti27 – 271A → H AA sequence (PubMed:11154066)Curated

Mass spectrometryi

Molecular mass is 15896 Da from positions 1 - 140. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71288.1.
RefSeqiYP_144731.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71288; BAD71288; BAD71288.
GeneIDi3168485.
KEGGittj:TTHA1465.
PATRICi23957887. VBITheThe93045_1439.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71288.1 .
RefSeqi YP_144731.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 M 1-140 [» ]
1VVM X-ray 3.22 N 1-140 [» ]
1VVO X-ray 3.22 N 1-140 [» ]
1VVQ X-ray 3.90 N 1-140 [» ]
1VVS X-ray 3.90 N 1-140 [» ]
1VVU X-ray 3.90 N 1-140 [» ]
1VVW X-ray 3.90 N 1-140 [» ]
1VVY X-ray 3.92 N 1-140 [» ]
1VW0 X-ray 3.92 N 1-140 [» ]
1VX9 X-ray 2.94 N 1-140 [» ]
1VXJ X-ray 2.94 N 1-140 [» ]
1VXL X-ray 3.48 N 1-140 [» ]
1VXN X-ray 3.48 N 1-140 [» ]
1VXQ X-ray 3.14 N 1-140 [» ]
1VXT X-ray 3.14 N 1-140 [» ]
1VY1 X-ray 3.68 N 1-140 [» ]
1VY3 X-ray 3.68 N 1-140 [» ]
1YL3 X-ray 5.50 M 1-140 [» ]
2B9P X-ray 6.46 N 1-140 [» ]
2HGJ X-ray 5.00 M 1-140 [» ]
2HGQ X-ray 5.50 M 1-140 [» ]
2HGU X-ray 4.51 M 1-140 [» ]
2J01 X-ray 2.80 N 1-140 [» ]
2J03 X-ray 2.80 N 1-140 [» ]
2V47 X-ray 3.80 N 1-140 [» ]
2V49 X-ray 3.80 N 1-140 [» ]
2WDI X-ray 3.30 N 1-140 [» ]
2WDJ X-ray 3.30 N 1-140 [» ]
2WDL X-ray 3.50 N 1-140 [» ]
2WDN X-ray 3.50 N 1-140 [» ]
2WH2 X-ray 3.45 N 1-140 [» ]
2WH4 X-ray 3.45 N 1-140 [» ]
2WRJ X-ray 3.60 N 1-140 [» ]
2WRL X-ray 3.60 N 1-140 [» ]
2WRO X-ray 3.60 N 1-140 [» ]
2WRR X-ray 3.60 N 1-140 [» ]
2X9S X-ray 3.10 N 1-140 [» ]
2X9U X-ray 3.10 N 1-140 [» ]
2XG0 X-ray 3.20 N 1-140 [» ]
2XG2 X-ray 3.20 N 1-140 [» ]
2XQE X-ray 3.10 N 1-140 [» ]
2XTG electron microscopy 7.80 N 1-140 [» ]
2XUX electron microscopy 7.60 N 1-140 [» ]
2Y0V X-ray 3.10 N 1-140 [» ]
2Y0X X-ray 3.10 N 1-140 [» ]
2Y0Z X-ray 3.10 N 1-140 [» ]
2Y11 X-ray 3.10 N 1-140 [» ]
2Y13 X-ray 3.10 N 1-140 [» ]
2Y15 X-ray 3.10 N 1-140 [» ]
2Y17 X-ray 3.10 N 1-140 [» ]
2Y19 X-ray 3.10 N 1-140 [» ]
3FIN electron microscopy 6.40 N 1-139 [» ]
3HUX X-ray 3.10 N 1-140 [» ]
3HUZ X-ray 3.10 N 1-140 [» ]
3I8F X-ray 3.10 M 1-140 [» ]
3I8I X-ray 3.10 M 1-140 [» ]
3I9C X-ray 3.50 M 1-140 [» ]
3I9E X-ray 3.50 M 1-140 [» ]
3KIR X-ray 3.30 N 1-140 [» ]
3KIT X-ray 3.30 N 1-140 [» ]
3KIW X-ray 3.60 N 1-140 [» ]
3KIY X-ray 3.60 N 1-140 [» ]
3KNI X-ray 3.00 N 1-140 [» ]
3KNK X-ray 3.00 N 1-140 [» ]
3KNM X-ray 3.45 N 1-140 [» ]
3KNO X-ray 3.45 N 1-140 [» ]
3OHZ X-ray 3.00 N 1-140 [» ]
3OI3 X-ray 3.10 N 1-140 [» ]
3OI5 X-ray 3.10 N 1-140 [» ]
3TVE X-ray 3.10 M 1-138 [» ]
3TVH X-ray 3.10 M 1-138 [» ]
3UXQ X-ray 3.20 N 1-140 [» ]
3UXR X-ray 3.20 N 1-140 [» ]
3UYE X-ray 3.00 M 1-140 [» ]
3UYG X-ray 3.00 M 1-140 [» ]
3UZ1 X-ray 3.30 M 1-140 [» ]
3UZ2 X-ray 3.30 M 1-140 [» ]
3UZ8 X-ray 3.00 M 1-140 [» ]
3UZ9 X-ray 3.00 M 1-140 [» ]
3UZF X-ray 3.30 M 1-140 [» ]
3UZH X-ray 3.30 M 1-140 [» ]
3UZK X-ray 3.30 M 1-140 [» ]
3UZN X-ray 3.30 M 1-140 [» ]
3V23 X-ray 3.00 N 1-140 [» ]
3V25 X-ray 3.00 N 1-140 [» ]
3V27 X-ray 3.10 N 1-140 [» ]
3V29 X-ray 3.10 N 1-140 [» ]
3V2D X-ray 2.70 N 1-140 [» ]
3V2F X-ray 2.70 N 1-140 [» ]
3V6W X-ray 3.90 N 1-140 [» ]
3V6X X-ray 3.90 N 1-140 [» ]
3ZN9 X-ray 3.10 N 1-140 [» ]
3ZNE X-ray 3.10 N 1-140 [» ]
3ZVP X-ray 3.80 N 1-140 [» ]
4ABS X-ray 3.10 N 1-140 [» ]
4B8G X-ray 3.70 N 1-140 [» ]
4B8I X-ray 3.70 N 1-140 [» ]
4BTD X-ray 2.95 N 1-140 [» ]
4BYC X-ray 3.35 N 1-140 [» ]
4BYE X-ray 3.35 N 1-140 [» ]
4DHA X-ray 3.20 N 1-140 [» ]
4DHC X-ray 3.20 N 1-140 [» ]
4EJB X-ray 3.52 N 1-140 [» ]
4EJC X-ray 3.52 N 1-140 [» ]
4G5L X-ray 3.30 M 1-140 [» ]
4G5N X-ray 3.30 M 1-140 [» ]
4G5U X-ray 3.10 M 1-140 [» ]
4G5W X-ray 3.10 M 1-140 [» ]
4JUX X-ray 2.86 N 1-140 [» ]
4K0M X-ray 3.30 N 1-138 [» ]
4K0Q X-ray 3.30 N 1-138 [» ]
4KX0 X-ray 3.44 N 1-140 [» ]
4KX2 X-ray 3.44 N 1-140 [» ]
4NVV X-ray 3.00 N 1-140 [» ]
4NVX X-ray 3.00 N 1-140 [» ]
4NVZ X-ray 3.10 N 1-140 [» ]
4NW1 X-ray 3.10 N 1-140 [» ]
4QCN X-ray 2.60 N 1-140 [» ]
4QCP X-ray 2.60 N 1-140 [» ]
4QCR X-ray 2.55 N 1-140 [» ]
4QCT X-ray 2.55 N 1-140 [» ]
4QCV X-ray 2.90 N 1-140 [» ]
4QCX X-ray 2.90 N 1-140 [» ]
4QCZ X-ray 2.80 N 1-140 [» ]
4QD1 X-ray 2.80 N 1-140 [» ]
ProteinModelPortali P60488.
SMRi P60488. Positions 2-140.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1465.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71288 ; BAD71288 ; BAD71288 .
GeneIDi 3168485.
KEGGi ttj:TTHA1465.
PATRICi 23957887. VBITheThe93045_1439.

Phylogenomic databases

eggNOGi COG0102.
HOGENOMi HOG000225286.
KOi K02871.
OMAi GIKETNF.
OrthoDBi EOG628FBD.
PhylomeDBi P60488.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1501-MONOMER.

Miscellaneous databases

EvolutionaryTracei P60488.

Family and domain databases

Gene3Di 3.90.1180.10. 1 hit.
HAMAPi MF_01366. Ribosomal_L13.
InterProi IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view ]
PANTHERi PTHR11545. PTHR11545. 1 hit.
Pfami PF00572. Ribosomal_L13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMi SSF52161. SSF52161. 1 hit.
TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-39.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL13_THET8
AccessioniPrimary (citable) accession number: P60488
Secondary accession number(s): Q5SIA9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: October 29, 2014
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3