50S ribosomal protein L13 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

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P60488 (RL13_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 86. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L13

Gene names

Name:	rplM
Ordered Locus Names:	TTHA1465

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	140 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP-Rule MF_01366
Subunit structure	Part of the 50S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein L13P family.
Mass spectrometry	Molecular mass is 15896 Da from positions 1 - 140. Determined by MALDI. Ref.3

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 140

140

50S ribosomal protein L13 HAMAP-Rule MF_01366

PRO_0000133754

Experimental info

Sequence conflict

A → H AA sequence Ref.2

Secondary structure

140

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

P60488 [UniParc].

Last modified March 29, 2005. Version 2.
Checksum: 657212AE35E6F502
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FASTA

140

15,895

        10         20         30         40         50         60 
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD FVVVVNADKI 

        70         80         90        100        110        120 
RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE HAVKGMLPKG PLGRRLFKRL 

       130        140 
KVYAGPDHPH QAQRPEKLEV

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[2]	"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus." Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T. Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-39.
[3]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY.
[4]	"The path of messenger RNA through the ribosome." Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F. Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]	"Crystal structure of the ribosome at 5.5 A resolution." Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F. Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AP008226 Genomic DNA. Translation: BAD71288.1.

RefSeq

YP_144731.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1GIY	X-ray	5.50	M	1-140	[»]
1YL3	X-ray	5.50	M	1-140	[»]
2HGJ	X-ray	5.00	M	1-140	[»]
2HGQ	X-ray	5.50	M	1-140	[»]
2HGU	X-ray	4.51	M	1-140	[»]
2J01	X-ray	2.80	N	1-140	[»]
2J03	X-ray	2.80	N	1-140	[»]
2V47	X-ray	3.80	N	1-140	[»]
2V49	X-ray	3.80	N	1-140	[»]
2WDI	X-ray	3.30	N	1-140	[»]
2WDJ	X-ray	3.30	N	1-140	[»]
2WDL	X-ray	3.50	N	1-140	[»]
2WDN	X-ray	3.50	N	1-140	[»]
2WH2	X-ray	3.45	N	1-140	[»]
2WH4	X-ray	3.45	N	1-140	[»]
2WRJ	X-ray	3.60	N	1-140	[»]
2WRL	X-ray	3.60	N	1-140	[»]
2WRO	X-ray	3.60	N	1-140	[»]
2WRR	X-ray	3.60	N	1-140	[»]
2X9S	X-ray	3.10	N	1-140	[»]
2X9U	X-ray	3.10	N	1-140	[»]
2XG0	X-ray	3.20	N	1-140	[»]
2XG2	X-ray	3.20	N	1-140	[»]
2XQE	X-ray	3.10	N	1-140	[»]
2XTG	electron microscopy	7.80	N	1-140	[»]
2XUX	electron microscopy	7.60	N	1-140	[»]
2Y0V	X-ray	3.10	N	1-140	[»]
2Y0X	X-ray	3.10	N	1-140	[»]
2Y0Z	X-ray	3.10	N	1-140	[»]
2Y11	X-ray	3.10	N	1-140	[»]
2Y13	X-ray	3.10	N	1-140	[»]
2Y15	X-ray	3.10	N	1-140	[»]
2Y17	X-ray	3.10	N	1-140	[»]
2Y19	X-ray	3.10	N	1-140	[»]
3FIN	electron microscopy	6.40	N	1-139	[»]
3HUX	X-ray	3.10	N	1-140	[»]
3HUZ	X-ray	3.10	N	1-140	[»]
3I8F	X-ray	3.10	M	1-140	[»]
3I8I	X-ray	3.10	M	1-140	[»]
3I9C	X-ray	3.50	M	1-140	[»]
3I9E	X-ray	3.50	M	1-140	[»]
3KIR	X-ray	3.30	N	1-140	[»]
3KIT	X-ray	3.30	N	1-140	[»]
3KIW	X-ray	3.60	N	1-140	[»]
3KIY	X-ray	3.60	N	1-140	[»]
3KNI	X-ray	3.00	N	1-140	[»]
3KNK	X-ray	3.00	N	1-140	[»]
3KNM	X-ray	3.45	N	1-140	[»]
3KNO	X-ray	3.45	N	1-140	[»]
3TVE	X-ray	3.10	M	1-138	[»]
3TVH	X-ray	3.10	M	1-138	[»]
3UXQ	X-ray	3.20	N	1-140	[»]
3UXR	X-ray	3.20	N	1-140	[»]
3UYE	X-ray	3.00	M	1-140	[»]
3UYG	X-ray	3.00	M	1-140	[»]
3UZ1	X-ray	3.30	M	1-140	[»]
3UZ2	X-ray	3.30	M	1-140	[»]
3UZ8	X-ray	3.00	M	1-140	[»]
3UZ9	X-ray	3.00	M	1-140	[»]
3UZF	X-ray	3.30	M	1-140	[»]
3UZH	X-ray	3.30	M	1-140	[»]
3UZK	X-ray	3.30	M	1-140	[»]
3UZN	X-ray	3.30	M	1-140	[»]
3V23	X-ray	3.00	N	1-140	[»]
3V25	X-ray	3.00	N	1-140	[»]
3V27	X-ray	3.10	N	1-140	[»]
3V29	X-ray	3.10	N	1-140	[»]
3V2D	X-ray	2.70	N	1-140	[»]
3V2F	X-ray	2.70	N	1-140	[»]
3ZN9	X-ray	3.10	N	1-140	[»]
3ZNE	X-ray	3.10	N	1-140	[»]
3ZVP	X-ray	3.80	N	1-140	[»]
4ABS	X-ray	3.10	N	1-140	[»]
4B8G	X-ray	3.70	N	1-140	[»]
4B8I	X-ray	3.70	N	1-140	[»]
4DHA	X-ray	3.20	N	1-140	[»]
4DHC	X-ray	3.20	N	1-140	[»]
4G5L	X-ray	3.30	M	1-140	[»]
4G5N	X-ray	3.30	M	1-140	[»]
4G5U	X-ray	3.10	M	1-140	[»]
4G5W	X-ray	3.10	M	1-140	[»]

ProteinModelPortal

P60488.

SMR

P60488. Positions 2-140.

ModBase

Search...

Protein-protein interaction databases

STRING

300852.TTHA1465.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAD71288; BAD71288; BAD71288.

GeneID

3168485.

KEGG

ttj:TTHA1465.

PATRIC

23957887. VBITheThe93045_1439.

Phylogenomic databases

eggNOG

COG0102.

HOGENOM

HOG000225286.

K02871.

OMA

MLPKTRL.

ProtClustDB

PRK09216.

Enzyme and pathway databases

BioCyc

TTHE300852:GH8R-1501-MONOMER.

Family and domain databases

Gene3D

3.90.1180.10. 1 hit.

HAMAP

MF_01366_B. Ribosomal_L13_B.

InterPro

IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]

PANTHER

PTHR11545. PTHR11545. 1 hit.

Pfam

PF00572. Ribosomal_L13. 1 hit.
[Graphical view]

PIRSF

PIRSF002181. Ribosomal_L13. 1 hit.

SUPFAM

SSF52161. Ribosomal_L13. 1 hit.

TIGRFAMs

TIGR01066. rplM_bact. 1 hit.

PROSITE

PS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

P60488.

Entry information

Entry name

RL13_THET8

Accession

Primary (citable) accession number: P60488
Secondary accession number(s): Q5SIA9

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 1, 2004
Last sequence update:	March 29, 2005
Last modified:	May 29, 2013
This is version 86 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Experimental info

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Other

Entry information

Relevant documents