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P60488 (RL13_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 96. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L13
Gene names
Name:rplM
Ordered Locus Names:TTHA1465
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length140 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP-Rule MF_01366

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L13P family.

Mass spectrometry

Molecular mass is 15896 Da from positions 1 - 140. Determined by MALDI. Ref.3

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14014050S ribosomal protein L13 HAMAP-Rule MF_01366
PRO_0000133754

Experimental info

Sequence conflict271A → H AA sequence Ref.2

Secondary structure

..................................... 140
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P60488 [UniParc].

Last modified March 29, 2005. Version 2.
Checksum: 657212AE35E6F502

FASTA14015,895
        10         20         30         40         50         60 
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD FVVVVNADKI 

        70         80         90        100        110        120 
RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE HAVKGMLPKG PLGRRLFKRL 

       130        140 
KVYAGPDHPH QAQRPEKLEV 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-39.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71288.1.
RefSeqYP_144731.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50M1-140[»]
1YL3X-ray5.50M1-140[»]
2B9PX-ray6.46N1-140[»]
2HGJX-ray5.00M1-140[»]
2HGQX-ray5.50M1-140[»]
2HGUX-ray4.51M1-140[»]
2J01X-ray2.80N1-140[»]
2J03X-ray2.80N1-140[»]
2V47X-ray3.80N1-140[»]
2V49X-ray3.80N1-140[»]
2WDIX-ray3.30N1-140[»]
2WDJX-ray3.30N1-140[»]
2WDLX-ray3.50N1-140[»]
2WDNX-ray3.50N1-140[»]
2WH2X-ray3.45N1-140[»]
2WH4X-ray3.45N1-140[»]
2WRJX-ray3.60N1-140[»]
2WRLX-ray3.60N1-140[»]
2WROX-ray3.60N1-140[»]
2WRRX-ray3.60N1-140[»]
2X9SX-ray3.10N1-140[»]
2X9UX-ray3.10N1-140[»]
2XG0X-ray3.20N1-140[»]
2XG2X-ray3.20N1-140[»]
2XQEX-ray3.10N1-140[»]
2XTGelectron microscopy7.80N1-140[»]
2XUXelectron microscopy7.60N1-140[»]
2Y0VX-ray3.10N1-140[»]
2Y0XX-ray3.10N1-140[»]
2Y0ZX-ray3.10N1-140[»]
2Y11X-ray3.10N1-140[»]
2Y13X-ray3.10N1-140[»]
2Y15X-ray3.10N1-140[»]
2Y17X-ray3.10N1-140[»]
2Y19X-ray3.10N1-140[»]
3FINelectron microscopy6.40N1-139[»]
3HUXX-ray3.10N1-140[»]
3HUZX-ray3.10N1-140[»]
3I8FX-ray3.10M1-140[»]
3I8IX-ray3.10M1-140[»]
3I9CX-ray3.50M1-140[»]
3I9EX-ray3.50M1-140[»]
3KIRX-ray3.30N1-140[»]
3KITX-ray3.30N1-140[»]
3KIWX-ray3.60N1-140[»]
3KIYX-ray3.60N1-140[»]
3KNIX-ray3.00N1-140[»]
3KNKX-ray3.00N1-140[»]
3KNMX-ray3.45N1-140[»]
3KNOX-ray3.45N1-140[»]
3OHZX-ray3.00N1-140[»]
3OI3X-ray3.10N1-140[»]
3OI5X-ray3.10N1-140[»]
3TVEX-ray3.10M1-138[»]
3TVHX-ray3.10M1-138[»]
3UXQX-ray3.20N1-140[»]
3UXRX-ray3.20N1-140[»]
3UYEX-ray3.00M1-140[»]
3UYGX-ray3.00M1-140[»]
3UZ1X-ray3.30M1-140[»]
3UZ2X-ray3.30M1-140[»]
3UZ8X-ray3.00M1-140[»]
3UZ9X-ray3.00M1-140[»]
3UZFX-ray3.30M1-140[»]
3UZHX-ray3.30M1-140[»]
3UZKX-ray3.30M1-140[»]
3UZNX-ray3.30M1-140[»]
3V23X-ray3.00N1-140[»]
3V25X-ray3.00N1-140[»]
3V27X-ray3.10N1-140[»]
3V29X-ray3.10N1-140[»]
3V2DX-ray2.70N1-140[»]
3V2FX-ray2.70N1-140[»]
3V6WX-ray3.90N1-140[»]
3V6XX-ray3.90N1-140[»]
3ZN9X-ray3.10N1-140[»]
3ZNEX-ray3.10N1-140[»]
3ZVPX-ray3.80N1-140[»]
4ABSX-ray3.10N1-140[»]
4B8GX-ray3.70N1-140[»]
4B8IX-ray3.70N1-140[»]
4BTDX-ray2.95N1-140[»]
4BYCX-ray3.35N1-140[»]
4BYEX-ray3.35N1-140[»]
4DHAX-ray3.20N1-140[»]
4DHCX-ray3.20N1-140[»]
4EJBX-ray3.52N1-140[»]
4EJCX-ray3.52N1-140[»]
4G5LX-ray3.30M1-140[»]
4G5NX-ray3.30M1-140[»]
4G5UX-ray3.10M1-140[»]
4G5WX-ray3.10M1-140[»]
4JUXX-ray2.86N1-140[»]
4K0MX-ray3.30N1-138[»]
4K0QX-ray3.30N1-138[»]
4NVVX-ray3.00N1-140[»]
4NVXX-ray3.00N1-140[»]
4NVZX-ray3.10N1-140[»]
4NW1X-ray3.10N1-140[»]
ProteinModelPortalP60488.
SMRP60488. Positions 2-140.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1465.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71288; BAD71288; BAD71288.
GeneID3168485.
KEGGttj:TTHA1465.
PATRIC23957887. VBITheThe93045_1439.

Phylogenomic databases

eggNOGCOG0102.
HOGENOMHOG000225286.
KOK02871.
OMAGIKETNF.
OrthoDBEOG628FBD.
PhylomeDBP60488.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1501-MONOMER.

Family and domain databases

Gene3D3.90.1180.10. 1 hit.
HAMAPMF_01366. Ribosomal_L13.
InterProIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERPTHR11545. PTHR11545. 1 hit.
PfamPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMSSF52161. SSF52161. 1 hit.
TIGRFAMsTIGR01066. rplM_bact. 1 hit.
PROSITEPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP60488.

Entry information

Entry nameRL13_THET8
AccessionPrimary (citable) accession number: P60488
Secondary accession number(s): Q5SIA9
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: July 9, 2014
This is version 96 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references