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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1470-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:TTHA1465
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337541 – 14050S ribosomal protein L13Add BLAST140

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1465

Structurei

Secondary structure

1140
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi13 – 16Combined sources4
Turni23 – 26Combined sources4
Helixi27 – 34Combined sources8
Turni44 – 46Combined sources3
Beta strandi51 – 54Combined sources4
Beta strandi63 – 65Combined sources3
Beta strandi67 – 75Combined sources9
Beta strandi82 – 86Combined sources5
Helixi87 – 92Combined sources6
Helixi95 – 104Combined sources10
Helixi111 – 118Combined sources8
Beta strandi120 – 122Combined sources3
Beta strandi124 – 126Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RN/YN1-140[»]
1VY4X-ray2.60BN/DN1-140[»]
1VY5X-ray2.55BN/DN1-140[»]
1VY6X-ray2.90BN/DN1-140[»]
1VY7X-ray2.80BN/DN1-140[»]
4L47X-ray3.22RN/YN1-140[»]
4L71X-ray3.90RN/YN1-140[»]
4LELX-ray3.90RN/YN1-140[»]
4LFZX-ray3.92RN/YN1-140[»]
4LNTX-ray2.94RN/YN1-140[»]
4LSKX-ray3.48RN/YN1-140[»]
4LT8X-ray3.14RN/YN1-140[»]
4P6FX-ray3.60RN/YN1-140[»]
4P70X-ray3.68RN/YN1-140[»]
4TUAX-ray3.60RN/YN1-140[»]
4TUBX-ray3.60RN/YN1-140[»]
4TUCX-ray3.60RN/YN1-140[»]
4TUDX-ray3.60RN/YN1-140[»]
4TUEX-ray3.50RN/YN1-140[»]
4V42X-ray5.50BM1-140[»]
4V4PX-ray5.50M1-140[»]
4V4TX-ray6.46N1-140[»]
4V4XX-ray5.00BM1-140[»]
4V4YX-ray5.50BM1-140[»]
4V4ZX-ray4.51BM1-140[»]
4V51X-ray2.80BN/DN1-140[»]
4V5AX-ray3.50BN/DN1-140[»]
4V5CX-ray3.30BN/DN1-140[»]
4V5DX-ray3.50BN/DN1-140[»]
4V5EX-ray3.45BN/DN1-140[»]
4V5FX-ray3.60BN/DN1-140[»]
4V5GX-ray3.60BN/DN1-140[»]
4V5JX-ray3.10BN/DN1-140[»]
4V5KX-ray3.20BN/DN1-140[»]
4V5LX-ray3.10BN1-140[»]
4V5Melectron microscopy7.80BN1-140[»]
4V5Nelectron microscopy7.60BN1-140[»]
4V5PX-ray3.10BN/DN1-140[»]
4V5QX-ray3.10BN/DN1-140[»]
4V5RX-ray3.10BN/DN1-140[»]
4V5SX-ray3.10BN/DN1-140[»]
4V68electron microscopy6.40BN1-139[»]
4V6AX-ray3.10BN/DN1-140[»]
4V6FX-ray3.10AM/DM1-140[»]
4V6GX-ray3.50BM/DM1-140[»]
4V7JX-ray3.30AN/BN1-140[»]
4V7KX-ray3.60AN/BN1-140[»]
4V7LX-ray3.00BN/DN1-140[»]
4V7MX-ray3.45BN/DN1-140[»]
4V7WX-ray3.00BN/DN1-140[»]
4V7XX-ray3.00BN/DN1-140[»]
4V7YX-ray3.00BN/DN1-140[»]
4V7ZX-ray3.10BN/DN1-140[»]
4V87X-ray3.10AM/DM1-138[»]
4V8AX-ray3.20AN/BN1-140[»]
4V8BX-ray3.00BM/DM1-140[»]
4V8CX-ray3.30AM/BM1-140[»]
4V8DX-ray3.00BM/DM1-140[»]
4V8EX-ray3.30AM/CM1-140[»]
4V8FX-ray3.30AM/DM1-140[»]
4V8GX-ray3.00BN/DN1-140[»]
4V8HX-ray3.10BN/DN1-140[»]
4V8IX-ray2.70BN/DN1-140[»]
4V8JX-ray3.90BN/DN1-140[»]
4V8NX-ray3.10BN/DN1-140[»]
4V8OX-ray3.80BN1-140[»]
4V8QX-ray3.10AN1-140[»]
4V8UX-ray3.70BN/DN1-140[»]
4V8XX-ray3.35BN/DN1-140[»]
4V90X-ray2.95BN1-140[»]
4V95X-ray3.20BN/DN1-140[»]
4V97X-ray3.52BN/DN1-140[»]
4V9AX-ray3.30BM/DM1-140[»]
4V9BX-ray3.10BM/DM1-140[»]
4V9HX-ray2.86BN1-140[»]
4V9IX-ray3.30BN/DN1-138[»]
4V9RX-ray3.00BN/DN1-140[»]
4V9SX-ray3.10BN/DN1-140[»]
4W2EX-ray2.90N1-140[»]
4W2FX-ray2.40BN/DN1-140[»]
4W2GX-ray2.55BN/DN1-140[»]
4W2HX-ray2.70BN/DN1-140[»]
4W2IX-ray2.70BN/DN1-140[»]
4W4GX-ray3.30RN/YN1-140[»]
4WPOX-ray2.80AN/CN1-140[»]
4WQ1X-ray3.1015/581-138[»]
4WQFX-ray2.80AN/CN1-140[»]
4WQRX-ray3.1515/581-140[»]
4WQUX-ray2.80AN/CN1-140[»]
4WQYX-ray2.80AN/CN1-140[»]
4WR6X-ray3.0515/581-140[»]
4WRAX-ray3.0515/581-140[»]
4WROX-ray3.05581-140[»]
4WSDX-ray2.9515/581-140[»]
4WSMX-ray3.3015/581-140[»]
4WT1X-ray3.0515/581-140[»]
4WT8X-ray3.40CM/DM1-138[»]
4WU1X-ray3.2015/581-140[»]
4WZDX-ray3.1015/581-140[»]
4WZOX-ray3.3015/581-140[»]
4Y4OX-ray2.301N/2N1-140[»]
4Y4PX-ray2.501N/2N1-140[»]
4YPBX-ray3.40RN/YN1-140[»]
4YZVX-ray3.10RN/YN1-140[»]
4Z3SX-ray2.651N/2N1-140[»]
4Z8CX-ray2.901N/2N1-140[»]
4ZERX-ray3.101N/2N1-140[»]
4ZSNX-ray3.60RN/YN1-140[»]
5A9Zelectron microscopy4.70AK2-140[»]
5AA0electron microscopy5.00AK2-140[»]
5CZPX-ray3.30RN/YN1-140[»]
5D8BX-ray3.63DB/H1-140[»]
5DFEX-ray3.10RN/YN1-140[»]
5DOXX-ray3.101N/2N1-140[»]
5DOYX-ray2.601N/2N1-140[»]
5E7KX-ray3.2015/581-140[»]
5E81X-ray2.9515/581-140[»]
5EL4X-ray3.1515/581-140[»]
5EL5X-ray3.1515/581-140[»]
5EL6X-ray3.1015/581-140[»]
5EL7X-ray3.1515/581-140[»]
5F8KX-ray2.801N/2N1-140[»]
5FDUX-ray2.901N/2N1-140[»]
5FDVX-ray2.801N/2N1-140[»]
5HAUX-ray3.001L/2L1-140[»]
5HCPX-ray2.891N/2N1-140[»]
5HCQX-ray2.801N/2N1-140[»]
5HCRX-ray2.801N/2N1-140[»]
5HD1X-ray2.701N/2N1-140[»]
5IB7X-ray2.9915/581-140[»]
5IB8X-ray3.1315/581-140[»]
5IBBX-ray2.9615/581-140[»]
5IMQelectron microscopy3.80f1-140[»]
5IMRelectron microscopy-f1-140[»]
5J30X-ray3.20RN/YN1-140[»]
5J3CX-ray3.04RN/YN1-140[»]
5J4BX-ray2.601N/2N1-140[»]
5J4CX-ray2.801N/2N1-140[»]
5J8BX-ray2.60N1-140[»]
5NDKX-ray2.9515/581-140[»]
5OT7electron microscopy3.80o1-139[»]
5UQ7electron microscopy3.50N1-140[»]
5UQ8electron microscopy3.20N1-140[»]
5VP2X-ray2.801N/2N1-140[»]
5W4KX-ray2.701N/2N1-140[»]
5WISX-ray2.701N/2N1-140[»]
5WITX-ray2.601N/2N1-140[»]
6FKRX-ray3.201N/2N1-140[»]
ProteinModelPortaliP60488
SMRiP60488
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60488

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK
PhylomeDBiP60488

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

P60488-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD
60 70 80 90 100
FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE
110 120 130 140
HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV
Length:140
Mass (Da):15,895
Last modified:March 29, 2005 - v2
Checksum:i657212AE35E6F502
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti27A → H AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 15896 Da from positions 1 - 140. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71288.1
RefSeqiWP_011173515.1, NC_006461.1
YP_144731.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71288; BAD71288; BAD71288
GeneIDi3168485
KEGGittj:TTHA1465
PATRICifig|300852.9.peg.1439

Entry informationi

Entry nameiRL13_THET8
AccessioniPrimary (citable) accession number: P60488
Secondary accession number(s): Q5SIA9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: May 23, 2018
This is version 130 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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