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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:TTHA1465
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337541 – 14050S ribosomal protein L13Add BLAST140

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1465.

Structurei

Secondary structure

1140
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi13 – 16Combined sources4
Turni23 – 26Combined sources4
Helixi27 – 34Combined sources8
Turni44 – 46Combined sources3
Beta strandi51 – 54Combined sources4
Beta strandi63 – 65Combined sources3
Beta strandi67 – 75Combined sources9
Beta strandi82 – 86Combined sources5
Helixi87 – 92Combined sources6
Helixi95 – 104Combined sources10
Helixi111 – 118Combined sources8
Beta strandi120 – 122Combined sources3
Beta strandi124 – 126Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RN/YN1-140[»]
1VY4X-ray2.60BN/DN1-140[»]
1VY5X-ray2.55BN/DN1-140[»]
1VY6X-ray2.90BN/DN1-140[»]
1VY7X-ray2.80BN/DN1-140[»]
4L47X-ray3.22RN/YN1-140[»]
4L71X-ray3.90RN/YN1-140[»]
4LELX-ray3.90RN/YN1-140[»]
4LFZX-ray3.92RN/YN1-140[»]
4LNTX-ray2.94RN/YN1-140[»]
4LSKX-ray3.48RN/YN1-140[»]
4LT8X-ray3.14RN/YN1-140[»]
4P6FX-ray3.60RN/YN1-140[»]
4P70X-ray3.68RN/YN1-140[»]
4TUAX-ray3.60RN/YN1-140[»]
4TUBX-ray3.60RN/YN1-140[»]
4TUCX-ray3.60RN/YN1-140[»]
4TUDX-ray3.60RN/YN1-140[»]
4TUEX-ray3.50RN/YN1-140[»]
4V42X-ray5.50BM1-140[»]
4V4PX-ray5.50M1-140[»]
4V4TX-ray6.46N1-140[»]
4V4XX-ray5.00BM1-140[»]
4V4YX-ray5.50BM1-140[»]
4V4ZX-ray4.51BM1-140[»]
4V51X-ray2.80BN/DN1-140[»]
4V5AX-ray3.50BN/DN1-140[»]
4V5CX-ray3.30BN/DN1-140[»]
4V5DX-ray3.50BN/DN1-140[»]
4V5EX-ray3.45BN/DN1-140[»]
4V5FX-ray3.60BN/DN1-140[»]
4V5GX-ray3.60BN/DN1-140[»]
4V5JX-ray3.10BN/DN1-140[»]
4V5KX-ray3.20BN/DN1-140[»]
4V5LX-ray3.10BN1-140[»]
4V5Melectron microscopy7.80BN1-140[»]
4V5Nelectron microscopy7.60BN1-140[»]
4V5PX-ray3.10BN/DN1-140[»]
4V5QX-ray3.10BN/DN1-140[»]
4V5RX-ray3.10BN/DN1-140[»]
4V5SX-ray3.10BN/DN1-140[»]
4V68electron microscopy6.40BN1-139[»]
4V6AX-ray3.10BN/DN1-140[»]
4V6FX-ray3.10AM/DM1-140[»]
4V6GX-ray3.50BM/DM1-140[»]
4V7JX-ray3.30AN/BN1-140[»]
4V7KX-ray3.60AN/BN1-140[»]
4V7LX-ray3.00BN/DN1-140[»]
4V7MX-ray3.45BN/DN1-140[»]
4V7WX-ray3.00BN/DN1-140[»]
4V7XX-ray3.00BN/DN1-140[»]
4V7YX-ray3.00BN/DN1-140[»]
4V7ZX-ray3.10BN/DN1-140[»]
4V87X-ray3.10AM/DM1-138[»]
4V8AX-ray3.20AN/BN1-140[»]
4V8BX-ray3.00BM/DM1-140[»]
4V8CX-ray3.30AM/BM1-140[»]
4V8DX-ray3.00BM/DM1-140[»]
4V8EX-ray3.30AM/CM1-140[»]
4V8FX-ray3.30AM/DM1-140[»]
4V8GX-ray3.00BN/DN1-140[»]
4V8HX-ray3.10BN/DN1-140[»]
4V8IX-ray2.70BN/DN1-140[»]
4V8JX-ray3.90BN/DN1-140[»]
4V8NX-ray3.10BN/DN1-140[»]
4V8OX-ray3.80BN1-140[»]
4V8QX-ray3.10AN1-140[»]
4V8UX-ray3.70BN/DN1-140[»]
4V8XX-ray3.35BN/DN1-140[»]
4V90X-ray2.95BN1-140[»]
4V95X-ray3.20BN/DN1-140[»]
4V97X-ray3.52BN/DN1-140[»]
4V9AX-ray3.30BM/DM1-140[»]
4V9BX-ray3.10BM/DM1-140[»]
4V9HX-ray2.86BN1-140[»]
4V9IX-ray3.30BN/DN1-138[»]
4V9RX-ray3.00BN/DN1-140[»]
4V9SX-ray3.10BN/DN1-140[»]
4W2EX-ray2.90N1-140[»]
4W2FX-ray2.40BN/DN1-140[»]
4W2GX-ray2.55BN/DN1-140[»]
4W2HX-ray2.70BN/DN1-140[»]
4W2IX-ray2.70BN/DN1-140[»]
4W4GX-ray3.30RN/YN1-140[»]
4WPOX-ray2.80AN/CN1-140[»]
4WQ1X-ray3.1015/581-138[»]
4WQFX-ray2.80AN/CN1-140[»]
4WQRX-ray3.1515/581-140[»]
4WQUX-ray2.80AN/CN1-140[»]
4WQYX-ray2.80AN/CN1-140[»]
4WR6X-ray3.0515/581-140[»]
4WRAX-ray3.0515/581-140[»]
4WROX-ray3.05581-140[»]
4WSDX-ray2.9515/581-140[»]
4WSMX-ray3.3015/581-140[»]
4WT1X-ray3.0515/581-140[»]
4WT8X-ray3.40CM/DM1-138[»]
4WU1X-ray3.2015/581-140[»]
4WZDX-ray3.1015/581-140[»]
4WZOX-ray3.3015/581-140[»]
4Y4OX-ray2.301N/2N1-140[»]
4Y4PX-ray2.501N/2N1-140[»]
4YPBX-ray3.40RN/YN1-140[»]
4YZVX-ray3.10RN/YN1-140[»]
4Z3SX-ray2.651N/2N1-140[»]
4Z8CX-ray2.901N/2N1-140[»]
4ZERX-ray3.101N/2N1-140[»]
4ZSNX-ray3.60RN/YN1-140[»]
5A9Zelectron microscopy4.70AK2-140[»]
5AA0electron microscopy5.00AK2-140[»]
5CZPX-ray3.30RN/YN1-140[»]
5D8BX-ray3.63DB/H1-140[»]
5DFEX-ray3.10RN/YN1-140[»]
5DOXX-ray3.101N/2N1-140[»]
5DOYX-ray2.601N/2N1-140[»]
5E7KX-ray3.2015/581-140[»]
5E81X-ray2.9515/581-140[»]
5EL4X-ray3.1515/581-140[»]
5EL5X-ray3.1515/581-140[»]
5EL6X-ray3.1015/581-140[»]
5EL7X-ray3.1515/581-140[»]
5F8KX-ray2.801N/2N1-140[»]
5FDUX-ray2.901N/2N1-140[»]
5FDVX-ray2.801N/2N1-140[»]
5HAUX-ray3.001L/2L1-140[»]
5HCPX-ray2.891N/2N1-140[»]
5HCQX-ray2.801N/2N1-140[»]
5HCRX-ray2.801N/2N1-140[»]
5HD1X-ray2.701N/2N1-140[»]
5IB7X-ray2.9915/581-140[»]
5IB8X-ray3.1315/581-140[»]
5IBBX-ray2.9615/581-140[»]
5IMQelectron microscopy3.80f1-140[»]
5IMRelectron microscopy-f1-140[»]
5J30X-ray3.20RN/YN1-140[»]
5J3CX-ray3.04RN/YN1-140[»]
5J4BX-ray2.601N/2N1-140[»]
5J4CX-ray2.801N/2N1-140[»]
5J8BX-ray2.60N1-140[»]
ProteinModelPortaliP60488.
SMRiP60488.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60488.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiGMLPHNR.
PhylomeDBiP60488.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P60488-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD
60 70 80 90 100
FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE
110 120 130 140
HAVKGMLPKG PLGRRLFKRL KVYAGPDHPH QAQRPEKLEV
Length:140
Mass (Da):15,895
Last modified:March 29, 2005 - v2
Checksum:i657212AE35E6F502
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti27A → H AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 15896 Da from positions 1 - 140. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71288.1.
RefSeqiWP_011173515.1. NC_006461.1.
YP_144731.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71288; BAD71288; BAD71288.
GeneIDi3168485.
KEGGittj:TTHA1465.
PATRICi23957887. VBITheThe93045_1439.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71288.1.
RefSeqiWP_011173515.1. NC_006461.1.
YP_144731.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RN/YN1-140[»]
1VY4X-ray2.60BN/DN1-140[»]
1VY5X-ray2.55BN/DN1-140[»]
1VY6X-ray2.90BN/DN1-140[»]
1VY7X-ray2.80BN/DN1-140[»]
4L47X-ray3.22RN/YN1-140[»]
4L71X-ray3.90RN/YN1-140[»]
4LELX-ray3.90RN/YN1-140[»]
4LFZX-ray3.92RN/YN1-140[»]
4LNTX-ray2.94RN/YN1-140[»]
4LSKX-ray3.48RN/YN1-140[»]
4LT8X-ray3.14RN/YN1-140[»]
4P6FX-ray3.60RN/YN1-140[»]
4P70X-ray3.68RN/YN1-140[»]
4TUAX-ray3.60RN/YN1-140[»]
4TUBX-ray3.60RN/YN1-140[»]
4TUCX-ray3.60RN/YN1-140[»]
4TUDX-ray3.60RN/YN1-140[»]
4TUEX-ray3.50RN/YN1-140[»]
4V42X-ray5.50BM1-140[»]
4V4PX-ray5.50M1-140[»]
4V4TX-ray6.46N1-140[»]
4V4XX-ray5.00BM1-140[»]
4V4YX-ray5.50BM1-140[»]
4V4ZX-ray4.51BM1-140[»]
4V51X-ray2.80BN/DN1-140[»]
4V5AX-ray3.50BN/DN1-140[»]
4V5CX-ray3.30BN/DN1-140[»]
4V5DX-ray3.50BN/DN1-140[»]
4V5EX-ray3.45BN/DN1-140[»]
4V5FX-ray3.60BN/DN1-140[»]
4V5GX-ray3.60BN/DN1-140[»]
4V5JX-ray3.10BN/DN1-140[»]
4V5KX-ray3.20BN/DN1-140[»]
4V5LX-ray3.10BN1-140[»]
4V5Melectron microscopy7.80BN1-140[»]
4V5Nelectron microscopy7.60BN1-140[»]
4V5PX-ray3.10BN/DN1-140[»]
4V5QX-ray3.10BN/DN1-140[»]
4V5RX-ray3.10BN/DN1-140[»]
4V5SX-ray3.10BN/DN1-140[»]
4V68electron microscopy6.40BN1-139[»]
4V6AX-ray3.10BN/DN1-140[»]
4V6FX-ray3.10AM/DM1-140[»]
4V6GX-ray3.50BM/DM1-140[»]
4V7JX-ray3.30AN/BN1-140[»]
4V7KX-ray3.60AN/BN1-140[»]
4V7LX-ray3.00BN/DN1-140[»]
4V7MX-ray3.45BN/DN1-140[»]
4V7WX-ray3.00BN/DN1-140[»]
4V7XX-ray3.00BN/DN1-140[»]
4V7YX-ray3.00BN/DN1-140[»]
4V7ZX-ray3.10BN/DN1-140[»]
4V87X-ray3.10AM/DM1-138[»]
4V8AX-ray3.20AN/BN1-140[»]
4V8BX-ray3.00BM/DM1-140[»]
4V8CX-ray3.30AM/BM1-140[»]
4V8DX-ray3.00BM/DM1-140[»]
4V8EX-ray3.30AM/CM1-140[»]
4V8FX-ray3.30AM/DM1-140[»]
4V8GX-ray3.00BN/DN1-140[»]
4V8HX-ray3.10BN/DN1-140[»]
4V8IX-ray2.70BN/DN1-140[»]
4V8JX-ray3.90BN/DN1-140[»]
4V8NX-ray3.10BN/DN1-140[»]
4V8OX-ray3.80BN1-140[»]
4V8QX-ray3.10AN1-140[»]
4V8UX-ray3.70BN/DN1-140[»]
4V8XX-ray3.35BN/DN1-140[»]
4V90X-ray2.95BN1-140[»]
4V95X-ray3.20BN/DN1-140[»]
4V97X-ray3.52BN/DN1-140[»]
4V9AX-ray3.30BM/DM1-140[»]
4V9BX-ray3.10BM/DM1-140[»]
4V9HX-ray2.86BN1-140[»]
4V9IX-ray3.30BN/DN1-138[»]
4V9RX-ray3.00BN/DN1-140[»]
4V9SX-ray3.10BN/DN1-140[»]
4W2EX-ray2.90N1-140[»]
4W2FX-ray2.40BN/DN1-140[»]
4W2GX-ray2.55BN/DN1-140[»]
4W2HX-ray2.70BN/DN1-140[»]
4W2IX-ray2.70BN/DN1-140[»]
4W4GX-ray3.30RN/YN1-140[»]
4WPOX-ray2.80AN/CN1-140[»]
4WQ1X-ray3.1015/581-138[»]
4WQFX-ray2.80AN/CN1-140[»]
4WQRX-ray3.1515/581-140[»]
4WQUX-ray2.80AN/CN1-140[»]
4WQYX-ray2.80AN/CN1-140[»]
4WR6X-ray3.0515/581-140[»]
4WRAX-ray3.0515/581-140[»]
4WROX-ray3.05581-140[»]
4WSDX-ray2.9515/581-140[»]
4WSMX-ray3.3015/581-140[»]
4WT1X-ray3.0515/581-140[»]
4WT8X-ray3.40CM/DM1-138[»]
4WU1X-ray3.2015/581-140[»]
4WZDX-ray3.1015/581-140[»]
4WZOX-ray3.3015/581-140[»]
4Y4OX-ray2.301N/2N1-140[»]
4Y4PX-ray2.501N/2N1-140[»]
4YPBX-ray3.40RN/YN1-140[»]
4YZVX-ray3.10RN/YN1-140[»]
4Z3SX-ray2.651N/2N1-140[»]
4Z8CX-ray2.901N/2N1-140[»]
4ZERX-ray3.101N/2N1-140[»]
4ZSNX-ray3.60RN/YN1-140[»]
5A9Zelectron microscopy4.70AK2-140[»]
5AA0electron microscopy5.00AK2-140[»]
5CZPX-ray3.30RN/YN1-140[»]
5D8BX-ray3.63DB/H1-140[»]
5DFEX-ray3.10RN/YN1-140[»]
5DOXX-ray3.101N/2N1-140[»]
5DOYX-ray2.601N/2N1-140[»]
5E7KX-ray3.2015/581-140[»]
5E81X-ray2.9515/581-140[»]
5EL4X-ray3.1515/581-140[»]
5EL5X-ray3.1515/581-140[»]
5EL6X-ray3.1015/581-140[»]
5EL7X-ray3.1515/581-140[»]
5F8KX-ray2.801N/2N1-140[»]
5FDUX-ray2.901N/2N1-140[»]
5FDVX-ray2.801N/2N1-140[»]
5HAUX-ray3.001L/2L1-140[»]
5HCPX-ray2.891N/2N1-140[»]
5HCQX-ray2.801N/2N1-140[»]
5HCRX-ray2.801N/2N1-140[»]
5HD1X-ray2.701N/2N1-140[»]
5IB7X-ray2.9915/581-140[»]
5IB8X-ray3.1315/581-140[»]
5IBBX-ray2.9615/581-140[»]
5IMQelectron microscopy3.80f1-140[»]
5IMRelectron microscopy-f1-140[»]
5J30X-ray3.20RN/YN1-140[»]
5J3CX-ray3.04RN/YN1-140[»]
5J4BX-ray2.601N/2N1-140[»]
5J4CX-ray2.801N/2N1-140[»]
5J8BX-ray2.60N1-140[»]
ProteinModelPortaliP60488.
SMRiP60488.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1465.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71288; BAD71288; BAD71288.
GeneIDi3168485.
KEGGittj:TTHA1465.
PATRICi23957887. VBITheThe93045_1439.

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiGMLPHNR.
PhylomeDBiP60488.

Miscellaneous databases

EvolutionaryTraceiP60488.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL13_THET8
AccessioniPrimary (citable) accession number: P60488
Secondary accession number(s): Q5SIA9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: March 29, 2005
Last modified: November 30, 2016
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.