Reviewed, UniProtKB/Swiss-Prot P59753 (RS13_COXBU)

Names and origin

Protein names

Recommended name:
    30S ribosomal protein S13

Gene names

Name:	rpsM
Ordered Locus Names:	CBU_0260

Organism

Coxiella burnetii [Complete proteome] [HAMAP]

Taxonomic identifier

777 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Coxiellaceae › Coxiella

Protein attributes

Sequence length	119 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity.
Subunit structure	Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity.
Sequence similarities	Belongs to the ribosomal protein S13P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding tRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 119	119	30S ribosomal protein S13 HAMAP MF_01315		PRO_0000132087

Sequences

	Sequence		Length	Mass (Da)
	P59753-1 [UniParc]. Last modified June 27, 2003. Version 1. Checksum: 269B5AB1B143184E	FASTA	119	13,390
	10 20 30 40 50 60 MAARIAGVNI PVQKHARIAL QAIYGIGNSR ALEICKEAKI DPATKVKDLS EAELDALRTE 70 80 90 100 110 VGKFSVEGDL RRERSMDIKR KMDLGAYEGI RHRRGLPLRG QRTRSNARTR KGKRKPIRS

References

[1]

"Complete genome sequence of the Q-fever pathogen, Coxiella burnetii." Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A. , Scanlan D., Heinzen R.A., Thompson H.A., Samuel J.E., Fraser C.M., Heidelberg J.F. Proc. Natl. Acad. Sci. U.S.A. 100:5455-5460(2003) [PubMed: 12704232] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nine Mile phase I / RSA 493.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE016828 Genomic DNA. Translation: AAO89818.1.
RefSeq	NP_819304.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1208141.
GenomeReviews	Gene locus CBU_0260 in contig AE016828_GR.
KEGG	cbu:CBU_0260.
NMPDR	fig|227377.1.peg.248.
TIGR	CBU_0260.
Phylogenomic databases
HOGENOM	P59753.
OMA	RRQEGMA
Enzyme and pathway databases
BioCyc	CBUR227377:CBU_0260-MON.
Family and domain databases
HAMAP	MF_01315. [Tree]
InterPro	IPR001892. Ribosomal_S13. IPR010979. Ribosomal_S13-like_H2TH. IPR019980. Ribosomal_S13_bac-type. IPR018269. Ribosomal_S13_CS. [Graphical view]
Pfam	PF00416. Ribosomal_S13. 1 hit. [Graphical view]
PIRSF	PIRSF002134. Ribosomal_S13. 1 hit.
TIGRFAMs	TIGR03631. Bact_S13. 1 hit.
PROSITE	PS00646. RIBOSOMAL_S13_1. 1 hit. PS50159. RIBOSOMAL_S13_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS13_COXBU

Accession

Primary (citable) accession number: P59753

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2003
Last sequence update:	June 27, 2003
Last modified:	November 24, 2009
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)