Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Carbohydrate deacetylase

Gene

EF_3048

Organism
Enterococcus faecalis (strain ATCC 700802 / V583)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi129 – 1291Magnesium; via pros nitrogenUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Carbohydrate metabolism

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciEFAE226185:GHI1-2976-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Carbohydrate deacetylaseUniRule annotation (EC:3.5.1.-UniRule annotation)
Gene namesi
Ordered Locus Names:EF_3048
OrganismiEnterococcus faecalis (strain ATCC 700802 / V583)
Taxonomic identifieri226185 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesEnterococcaceaeEnterococcus
Proteomesi
  • UP000001415 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 262262Carbohydrate deacetylasePRO_0000051592Add
BLAST

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi226185.EF3048.

Structurei

Secondary structure

1
262
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 139Combined sources
Helixi17 – 2812Combined sources
Beta strandi29 – 313Combined sources
Beta strandi34 – 374Combined sources
Helixi44 – 5411Combined sources
Beta strandi59 – 646Combined sources
Turni77 – 793Combined sources
Helixi81 – 833Combined sources
Helixi93 – 964Combined sources
Turni97 – 993Combined sources
Helixi102 – 11615Combined sources
Helixi117 – 1193Combined sources
Beta strandi126 – 1283Combined sources
Helixi129 – 1346Combined sources
Helixi137 – 15014Combined sources
Helixi161 – 1699Combined sources
Turni170 – 1723Combined sources
Beta strandi177 – 1804Combined sources
Helixi185 – 1873Combined sources
Helixi190 – 20213Combined sources
Beta strandi206 – 2127Combined sources
Helixi219 – 2246Combined sources
Helixi230 – 2389Combined sources
Helixi241 – 2499Combined sources
Beta strandi253 – 2553Combined sources
Helixi257 – 2604Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2I5IX-ray1.70A/B1-262[»]
ProteinModelPortaliP59745.
SMRiP59745. Positions 2-262.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP59745.

Family & Domainsi

Sequence similaritiesi

Belongs to the YdjC deacetylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410901P. Bacteria.
COG3394. LUCA.
KOiK03478.
OMAiEPTHIDS.
OrthoDBiEOG6Z0Q7C.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
HAMAPiMF_01246. COD.
InterProiIPR006879. ChbG-like.
IPR022948. COD_ChbG_bac.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF04794. YdjC. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

P59745-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNKKLIINA DDFGYTPAVT QGIIEAHKRG VVTSTTALPT SPYFLEAMES
60 70 80 90 100
ARISAPTLAI GVHLTLTLNQ AKPILPREMV PSLVDEAGYF WHQSIFEEKV
110 120 130 140 150
NLEEVYNEWD AQIISFMKSG RRPDHIDSHH NVHGKNKKLL GVALALARKY
160 170 180 190 200
QLPLRNASRS IETKDYLELY QDVRTPDEML YQFYDKAIST ETILQLLDMV
210 220 230 240 250
VCSEGEVFEI NCHPAFIDTI LQNQSGYCMP RIREVEILTS QEVKEAIEER
260
GILLANYESL AM
Length:262
Mass (Da):29,733
Last modified:June 20, 2003 - v1
Checksum:iEBA2944867B917B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016830 Genomic DNA. Translation: AAO82730.1.
RefSeqiNP_816660.1. NC_004668.1.
WP_010706778.1. NC_004668.1.

Genome annotation databases

EnsemblBacteriaiAAO82730; AAO82730; EF_3048.
GeneIDi1201894.
KEGGiefa:EF3048.
PATRICi21856259. VBIEntFae7065_2842.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016830 Genomic DNA. Translation: AAO82730.1.
RefSeqiNP_816660.1. NC_004668.1.
WP_010706778.1. NC_004668.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2I5IX-ray1.70A/B1-262[»]
ProteinModelPortaliP59745.
SMRiP59745. Positions 2-262.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi226185.EF3048.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO82730; AAO82730; EF_3048.
GeneIDi1201894.
KEGGiefa:EF3048.
PATRICi21856259. VBIEntFae7065_2842.

Phylogenomic databases

eggNOGiENOG410901P. Bacteria.
COG3394. LUCA.
KOiK03478.
OMAiEPTHIDS.
OrthoDBiEOG6Z0Q7C.

Enzyme and pathway databases

BioCyciEFAE226185:GHI1-2976-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP59745.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
HAMAPiMF_01246. COD.
InterProiIPR006879. ChbG-like.
IPR022948. COD_ChbG_bac.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF04794. YdjC. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700802 / V583.
  2. "Crystal structure of hypothetical protein (ef3048) from Enterococcus faecalis V583 at 1.70 a resolution."
    Joint center for structural genomics (JCSG)
    Submitted (JUL-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS), SUBUNIT.

Entry informationi

Entry nameiYDJC_ENTFA
AccessioniPrimary (citable) accession number: P59745
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: June 20, 2003
Last modified: March 16, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.