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Protein

Carbohydrate deacetylase

Gene

EF_3048

Organism
Enterococcus faecalis (strain ATCC 700802 / V583)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi129Magnesium; via pros nitrogenUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Carbohydrate metabolism

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Carbohydrate deacetylaseUniRule annotation (EC:3.5.1.-UniRule annotation)
Gene namesi
Ordered Locus Names:EF_3048
OrganismiEnterococcus faecalis (strain ATCC 700802 / V583)
Taxonomic identifieri226185 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesEnterococcaceaeEnterococcus
Proteomesi
  • UP000001415 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000515921 – 262Carbohydrate deacetylaseAdd BLAST262

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi226185.EF3048.

Structurei

Secondary structure

1262
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 13Combined sources9
Helixi17 – 28Combined sources12
Beta strandi29 – 31Combined sources3
Beta strandi34 – 37Combined sources4
Helixi44 – 54Combined sources11
Beta strandi59 – 64Combined sources6
Turni77 – 79Combined sources3
Helixi81 – 83Combined sources3
Helixi93 – 96Combined sources4
Turni97 – 99Combined sources3
Helixi102 – 116Combined sources15
Helixi117 – 119Combined sources3
Beta strandi126 – 128Combined sources3
Helixi129 – 134Combined sources6
Helixi137 – 150Combined sources14
Helixi161 – 169Combined sources9
Turni170 – 172Combined sources3
Beta strandi177 – 180Combined sources4
Helixi185 – 187Combined sources3
Helixi190 – 202Combined sources13
Beta strandi206 – 212Combined sources7
Helixi219 – 224Combined sources6
Helixi230 – 238Combined sources9
Helixi241 – 249Combined sources9
Beta strandi253 – 255Combined sources3
Helixi257 – 260Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2I5IX-ray1.70A/B1-262[»]
ProteinModelPortaliP59745.
SMRiP59745.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP59745.

Family & Domainsi

Sequence similaritiesi

Belongs to the YdjC deacetylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410901P. Bacteria.
COG3394. LUCA.
KOiK03478.
OMAiEPTHIDS.

Family and domain databases

CDDicd10803. YdjC_EF3048_like. 1 hit.
Gene3Di3.20.20.370. 1 hit.
HAMAPiMF_01246. COD. 1 hit.
InterProiIPR022948. COD_ChbG_bac.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR006879. YdjC-like.
[Graphical view]
PfamiPF04794. YdjC. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

P59745-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNKKLIINA DDFGYTPAVT QGIIEAHKRG VVTSTTALPT SPYFLEAMES
60 70 80 90 100
ARISAPTLAI GVHLTLTLNQ AKPILPREMV PSLVDEAGYF WHQSIFEEKV
110 120 130 140 150
NLEEVYNEWD AQIISFMKSG RRPDHIDSHH NVHGKNKKLL GVALALARKY
160 170 180 190 200
QLPLRNASRS IETKDYLELY QDVRTPDEML YQFYDKAIST ETILQLLDMV
210 220 230 240 250
VCSEGEVFEI NCHPAFIDTI LQNQSGYCMP RIREVEILTS QEVKEAIEER
260
GILLANYESL AM
Length:262
Mass (Da):29,733
Last modified:June 20, 2003 - v1
Checksum:iEBA2944867B917B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016830 Genomic DNA. Translation: AAO82730.1.
RefSeqiNP_816660.1. NC_004668.1.
WP_010706778.1. NC_004668.1.

Genome annotation databases

EnsemblBacteriaiAAO82730; AAO82730; EF_3048.
GeneIDi1201894.
KEGGiefa:EF3048.
PATRICi21856259. VBIEntFae7065_2842.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016830 Genomic DNA. Translation: AAO82730.1.
RefSeqiNP_816660.1. NC_004668.1.
WP_010706778.1. NC_004668.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2I5IX-ray1.70A/B1-262[»]
ProteinModelPortaliP59745.
SMRiP59745.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi226185.EF3048.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO82730; AAO82730; EF_3048.
GeneIDi1201894.
KEGGiefa:EF3048.
PATRICi21856259. VBIEntFae7065_2842.

Phylogenomic databases

eggNOGiENOG410901P. Bacteria.
COG3394. LUCA.
KOiK03478.
OMAiEPTHIDS.

Miscellaneous databases

EvolutionaryTraceiP59745.

Family and domain databases

CDDicd10803. YdjC_EF3048_like. 1 hit.
Gene3Di3.20.20.370. 1 hit.
HAMAPiMF_01246. COD. 1 hit.
InterProiIPR022948. COD_ChbG_bac.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR006879. YdjC-like.
[Graphical view]
PfamiPF04794. YdjC. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDJC_ENTFA
AccessioniPrimary (citable) accession number: P59745
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: June 20, 2003
Last modified: November 2, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.