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Protein

Protein 9b

Gene

9b

Organism
Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein 9b
Alternative name(s):
Accessory protein 9b
ORF-9b
Gene namesi
ORF Names:9b
OrganismiHuman SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
Taxonomic identifieri227859 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageNidoviralesCoronaviridaeCoronavirinaeBetacoronavirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Paguma larvata (Masked palm civet) [TaxID: 9675]
Proteomesi
  • UP000000354 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm, Host cytoplasmic vesicle, Host membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9898Protein 9bPRO_0000106137Add
BLAST

Proteomic databases

PRIDEiP59636.

Interactioni

Subunit structurei

Homodimer.

Structurei

Secondary structure

1
98
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi14 – 2310Combined sources
Beta strandi42 – 476Combined sources
Beta strandi54 – 607Combined sources
Beta strandi65 – 673Combined sources
Beta strandi69 – 746Combined sources
Helixi85 – 873Combined sources
Beta strandi90 – 978Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2CMEX-ray2.80A/B9-98[»]
C/D/F/H10-98[»]
E/G9-98[»]
ProteinModelPortaliP59636.
SMRiP59636. Positions 9-98.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP59636.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR018542. SARS_lipid-bd.
[Graphical view]
PfamiPF09399. SARS_lipid_bind. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P59636-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPNQTNVVP PALHLVDPQI QLTITRMEDA MGQGQNSADP KVYPIILRLG
60 70 80 90
SQLSLSMARR NLDSLEARAF QSTPIVVQMT KLATTEELPD EFVVVTAK
Length:98
Mass (Da):10,802
Last modified:April 23, 2003 - v1
Checksum:i5166F22872915FCB
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti58 – 581A → V in strain: Isolate TWK.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY278741 Genomic RNA. No translation available.
AY274119 Genomic RNA. Translation: AAP41048.1.
AY282752 Genomic RNA. No translation available.
AY278554 Genomic RNA. Translation: AAP13574.1.
AY278491 Genomic RNA. No translation available.
AY278487 Genomic RNA. No translation available.
AY278488 Genomic RNA. Translation: AAP30038.1.
AY278489 Genomic RNA. Translation: AAP51235.1.
AY278490 Genomic RNA. No translation available.
AY279354 Genomic RNA. No translation available.
AY291451 Genomic RNA. Translation: AAP37025.1.
AY310120 Genomic RNA. Translation: AAP50496.1.
AY291315 Genomic RNA. Translation: AAP33708.1.
AY290752 Genomic RNA. Translation: AAP69659.1.
AP006557 Genomic RNA. Translation: BAC81359.1.
AP006558 Genomic RNA. Translation: BAC81373.1.
AP006559 Genomic RNA. Translation: BAC81387.1.
AP006560 Genomic RNA. Translation: BAC81401.1.
AP006561 Genomic RNA. Translation: BAC81415.1.
AY323977 Genomic RNA. Translation: AAP72985.1.
AY427439 Genomic RNA. Translation: AAQ94071.1.
RefSeqiNP_828859.1. NC_004718.3.

Genome annotation databases

GeneIDi1489679.
KEGGivg:1489679.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY278741 Genomic RNA. No translation available.
AY274119 Genomic RNA. Translation: AAP41048.1.
AY282752 Genomic RNA. No translation available.
AY278554 Genomic RNA. Translation: AAP13574.1.
AY278491 Genomic RNA. No translation available.
AY278487 Genomic RNA. No translation available.
AY278488 Genomic RNA. Translation: AAP30038.1.
AY278489 Genomic RNA. Translation: AAP51235.1.
AY278490 Genomic RNA. No translation available.
AY279354 Genomic RNA. No translation available.
AY291451 Genomic RNA. Translation: AAP37025.1.
AY310120 Genomic RNA. Translation: AAP50496.1.
AY291315 Genomic RNA. Translation: AAP33708.1.
AY290752 Genomic RNA. Translation: AAP69659.1.
AP006557 Genomic RNA. Translation: BAC81359.1.
AP006558 Genomic RNA. Translation: BAC81373.1.
AP006559 Genomic RNA. Translation: BAC81387.1.
AP006560 Genomic RNA. Translation: BAC81401.1.
AP006561 Genomic RNA. Translation: BAC81415.1.
AY323977 Genomic RNA. Translation: AAP72985.1.
AY427439 Genomic RNA. Translation: AAQ94071.1.
RefSeqiNP_828859.1. NC_004718.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2CMEX-ray2.80A/B9-98[»]
C/D/F/H10-98[»]
E/G9-98[»]
ProteinModelPortaliP59636.
SMRiP59636. Positions 9-98.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP59636.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1489679.
KEGGivg:1489679.

Miscellaneous databases

EvolutionaryTraceiP59636.

Family and domain databases

InterProiIPR018542. SARS_lipid-bd.
[Graphical view]
PfamiPF09399. SARS_lipid_bind. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiORF9B_CVHSA
AccessioniPrimary (citable) accession number: P59636
Secondary accession number(s): Q7T6R2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 23, 2003
Last sequence update: April 23, 2003
Last modified: December 9, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

The gene encoding this protein is included within the N gene (alternative ORF).

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.