Reviewed,
UniProtKB/Swiss-Prot P59510 (ATS20_HUMAN)
Last modified
November 24, 2009.
Version 72.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: A disintegrin and metalloproteinase with thrombospondin motifs 20 Short name=ADAMTS-20 Short name=ADAM-TS 20 Short name=ADAM-TS20 EC=3.4.24.- | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Complete proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1910 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level. |
General annotation (Comments)
| Function | May play a role in tissue-remodeling process occurring in both normal and pathological conditions. |
| Cofactor | Binds 1 zinc ion per subunit By similarity. |
| Subcellular location | Secreted › extracellular space › extracellular matrix By similarity. |
| Tissue specificity | Very sparingly expressed, although is detected at low levels in testis, prostate, ovary, heart, placenta, lung and pancreas. Overexpressed in several brain, colon and breast carcinomas. |
| Post-translational modification | The precursor is cleaved by a furin endopeptidase By similarity. |
| Sequence similarities | Contains 1 disintegrin domain. Contains 1 GON domain. Contains 1 peptidase M12B domain. Contains 15 TSP type-1 domains. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Extracellular matrix Secreted |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Signal |
| Ligand | Metal-binding Zinc |
| Molecular function | Hydrolase Metalloprotease Protease |
| PTM | Cleavage on pair of basic residues Disulfide bond Glycoprotein Zymogen |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Cellular component | proteinaceous extracellular matrix Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | zinc ion binding Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P59510-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P59510-2) The sequence of this isoform differs from the canonical sequence as follows: 683-693: THDICVQGQCM → SYNIDCNCVLK 1429-1504: CSASCGKGRK...QRDVYCRLKG → EDLKVKLLPQ...GDLKYYKNSL 1505-1910: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 21 | 21 | Potential | ||||||||
| Propeptide | 22 – 253 | 232 | By similarity | PRO_0000029206 | |||||||
| Chain | 254 – 1910 | 1657 | A disintegrin and metalloproteinase with thrombospondin motifs 20 | PRO_0000029207 | |||||||
Regions | |||||||||||
| Domain | 259 – 467 | 209 | Peptidase M12B | ||||||||
| Domain | 468 – 555 | 88 | Disintegrin | ||||||||
| Domain | 556 – 611 | 56 | TSP type-1 1 | ||||||||
| Domain | 846 – 904 | 59 | TSP type-1 2 | ||||||||
| Domain | 905 – 961 | 57 | TSP type-1 3 | ||||||||
| Domain | 966 – 1023 | 58 | TSP type-1 4 | ||||||||
| Domain | 1024 – 1073 | 50 | TSP type-1 5 | ||||||||
| Domain | 1076 – 1135 | 60 | TSP type-1 6 | ||||||||
| Domain | 1152 – 1206 | 55 | TSP type-1 7 | ||||||||
| Domain | 1207 – 1264 | 58 | TSP type-1 8 | ||||||||
| Domain | 1304 – 1356 | 53 | TSP type-1 9 | ||||||||
| Domain | 1358 – 1416 | 59 | TSP type-1 10 | ||||||||
| Domain | 1417 – 1475 | 59 | TSP type-1 11 | ||||||||
| Domain | 1476 – 1531 | 56 | TSP type-1 12 | ||||||||
| Domain | 1535 – 1588 | 54 | TSP type-1 13 | ||||||||
| Domain | 1589 – 1652 | 64 | TSP type-1 14 | ||||||||
| Domain | 1654 – 1710 | 57 | TSP type-1 15 | ||||||||
| Domain | 1711 – 1910 | 200 | GON | ||||||||
| Region | 724 – 846 | 123 | Spacer | ||||||||
| Compositional bias | 612 – 723 | 112 | Cys-rich | ||||||||
Sites | |||||||||||
| Active site | 404 | 1 | By similarity | ||||||||
| Metal binding | 403 | 1 | Zinc; catalytic By similarity | ||||||||
| Metal binding | 407 | 1 | Zinc; catalytic By similarity | ||||||||
| Metal binding | 413 | 1 | Zinc; catalytic By similarity | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 92 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 191 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 445 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 702 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 717 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 728 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 809 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 870 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1061 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1456 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1542 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1572 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1763 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1781 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1852 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 381 ↔ 462 | By similarity | |||||||||
| Disulfide bond | 419 ↔ 446 | By similarity | |||||||||
| Disulfide bond | 568 ↔ 605 | By similarity | |||||||||
| Disulfide bond | 572 ↔ 610 | By similarity | |||||||||
| Disulfide bond | 583 ↔ 595 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 683 – 693 | 11 | THDICVQGQCM → SYNIDCNCVLK in isoform 2. | VSP_007106 | |||||||
| Alternative sequence | 1429 – 1504 | 76 | CSASC…CRLKG → EDLKVKLLPQRTIILWELMK NIFCHGKHSHMYLINVVTDH LLYPRHCDPETIETYFLSLW SLQFTWGDLKYYKNSL in isoform 2. | VSP_007107 | |||||||
| Alternative sequence | 1505 – 1910 | 406 | Missing in isoform 2. | VSP_007108 | |||||||
| Natural variant | 876 | 1 | K → M: dbSNP rs7302446. | VAR_057088 | |||||||
| Natural variant | 1000 | 1 | R → H: dbSNP rs7297737. | VAR_057089 | |||||||
| Natural variant | 1273 | 1 | S → F: dbSNP rs7310011. | VAR_057090 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 152 | 1 | T → V in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 152 | 1 | T → V in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 360 | 1 | E → Y in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 360 | 1 | E → Y in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 371 | 1 | M → T in AAO15766. Ref.1 | ||||||||
| Sequence conflict | 456 | 1 | D → E in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 456 | 1 | D → E in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 648 | 1 | I → V in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 648 | 1 | I → V in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 792 – 793 | 2 | Missing in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 792 – 793 | 2 | Missing in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 818 – 821 | 4 | ILIE → LILQ in AAO15766. Ref.1 | ||||||||
| Sequence conflict | 908 – 912 | 5 | WHVIG → GMLLAK in AAO15766. Ref.1 | ||||||||
| Sequence conflict | 1315 | 1 | S → Q in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 1315 | 1 | S → Q in CAD56160. Ref.2 | ||||||||
| Sequence conflict | 1327 | 1 | R → T in AAO15766. Ref.1 | ||||||||
| Sequence conflict | 1816 | 1 | T → A in CAD56159. Ref.2 | ||||||||
| Sequence conflict | 1881 | 1 | E → Q in CAD56159. Ref.2 | ||||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Characterization of ADAMTS-9 and ADAMTS-20 as a distinct ADAMTS subfamily related to Caenorhabditis elegans GON-1." Somerville R.P., Longpre J.-M., Jungers K.A., Engle J.M., Ross M., Evanko S., Wight T.N., Leduc R., Apte S.S. J. Biol. Chem. 278:9503-9513(2003) [PubMed: 12514189] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | "Identification and characterization of ADAMTS-20 defines a novel subfamily of metalloproteinases-disintegrins with multiple thrombospondin-1 repeats and a unique GON domain." Llamazares M., Cal S., Quesada V., Lopez-Otin C. J. Biol. Chem. 278:13382-13389(2003) [PubMed: 12562771] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2). Tissue: Liver. |
| [3] | "The finished DNA sequence of human chromosome 12." Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R. Gibbs R.A.Nature 440:346-351(2006) [PubMed: 16541075] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| AF488804 mRNA. Translation: AAO15766.1. AJ515153 mRNA. Translation: CAD56159.3. AJ515154 mRNA. Translation: CAD56160.2. AC107018 Genomic DNA. No translation available. | |
| IPI | IPI00414321. IPI00874153. |
| RefSeq | NP_079279.3. |
| UniGene | Hs.287554 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | P59510. |
Protein family/group databases | |
| MEROPS | M12.246. |
Proteomic databases | |
| PRIDE | P59510. |
Genome annotation databases | |
| Ensembl | ENST00000389420; ENSP00000374071; ENSG00000173157; Homo sapiens. [Genome view] |
| GeneID | 80070. |
| KEGG | hsa:80070. |
Organism-specific databases | |
| CTD | 80070. |
| GeneCards | GC12M042034. |
| H-InvDB | HIX0010556. |
| HGNC | HGNC:17178. ADAMTS20. |
| MIM | 611681. gene. |
| PharmGKB | PA134901626. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | P59510. |
| OMA | LTRWHYS |
| OrthoDB | EOG9G1Q20 |
Gene expression databases | |
| ArrayExpress | P59510. |
| Bgee | P59510. |
| CleanEx | HS_ADAMTS20. |
| Genevestigator | P59510. |
| GermOnline | ENSG00000173157. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR010294. ADAM_spacer1. IPR012314. Pept_M12B_GON-ADAMTSs. IPR001590. Peptidase_M12B. IPR013273. Peptidase_M12B_ADAM-TS. IPR002870. Peptidase_M12B_N. IPR000884. Thrombospondin_1_rpt. [Graphical view] |
| Pfam | PF05986. ADAM_spacer1. 1 hit. PF08685. GON. 1 hit. PF01562. Pep_M12B_propep. 1 hit. PF01421. Reprolysin. 1 hit. PF00090. TSP_1. 11 hits. [Graphical view] |
| PRINTS | PR01857. ADAMTSFAMILY. |
| SMART | SM00209. TSP1. 13 hits. [Graphical view] |
| PROSITE | PS50215. ADAM_MEPRO. 1 hit. PS00427. DISINTEGRIN_1. False negative. PS50214. DISINTEGRIN_2. False negative. PS51046. GON. 1 hit. PS50092. TSP1. 12 hits. PS00142. ZINC_PROTEASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 70275. |
| SOURCE | Search... |
Entry information
| Entry name | ATS20_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P59510 Secondary accession number(s): A6NNC9 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| Peptidase families Classification of peptidase families and list of entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with


