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P59285

- ALLA_PSEPK

UniProt

P59285 - ALLA_PSEPK

Protein

Ureidoglycolate lyase

Gene

allA

Organism
Pseudomonas putida (strain KT2440)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 1 (12 Feb 2003)
      Previous versions | rss
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    Functioni

    Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.UniRule annotation

    Catalytic activityi

    (S)-ureidoglycolate = glyoxylate + urea.UniRule annotation

    Cofactori

    Nickel.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. ureidoglycolate hydrolase activity Source: InterPro
    2. ureidoglycolate lyase activity Source: UniProtKB-EC

    GO - Biological processi

    1. allantoin catabolic process Source: UniProtKB-UniPathway
    2. purine nucleobase metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Lyase

    Keywords - Biological processi

    Purine metabolism

    Enzyme and pathway databases

    BioCyciPPUT160488:GIXO-4368-MONOMER.
    UniPathwayiUPA00395.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ureidoglycolate lyaseUniRule annotation (EC:4.3.2.3UniRule annotation)
    Alternative name(s):
    UreidoglycolataseUniRule annotation
    Gene namesi
    Name:allAUniRule annotation
    Ordered Locus Names:PP_4288
    OrganismiPseudomonas putida (strain KT2440)
    Taxonomic identifieri160488 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000556: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 167167Ureidoglycolate lyasePRO_0000120551Add
    BLAST

    Interactioni

    Subunit structurei

    Homodimer.1 PublicationUniRule annotation

    Protein-protein interaction databases

    STRINGi160488.PP_4288.

    Structurei

    Secondary structure

    1
    167
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi6 – 83
    Helixi11 – 144
    Turni15 – 173
    Beta strandi18 – 214
    Beta strandi29 – 313
    Turni32 – 354
    Beta strandi36 – 4510
    Beta strandi47 – 493
    Beta strandi53 – 6210
    Beta strandi66 – 705
    Beta strandi72 – 754
    Beta strandi81 – 877
    Beta strandi91 – 966
    Beta strandi98 – 1014
    Helixi104 – 1063
    Beta strandi108 – 1125
    Beta strandi117 – 1204
    Beta strandi130 – 14415
    Beta strandi151 – 1544
    Helixi157 – 1593
    Beta strandi161 – 1633

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2BDRX-ray1.60A/B1-167[»]
    ProteinModelPortaliP59285.
    SMRiP59285. Positions 1-166.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP59285.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ureidoglycolate lyase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG3194.
    HOGENOMiHOG000256169.
    KOiK01483.
    OMAiNCDIFQF.
    OrthoDBiEOG6JX7JB.

    Family and domain databases

    Gene3Di2.60.120.480. 1 hit.
    HAMAPiMF_00616. Ureidogly_lyase.
    InterProiIPR011051. RmlC_Cupin.
    IPR007247. Ureidogly_hydro.
    IPR023525. Ureidogly_hydro_bac.
    IPR024060. Ureidoglycolate_hydrolase_dom.
    [Graphical view]
    PANTHERiPTHR21221. PTHR21221. 1 hit.
    PfamiPF04115. Ureidogly_hydro. 1 hit.
    [Graphical view]
    PIRSFiPIRSF017306. Ureidogly_hydro. 1 hit.
    SUPFAMiSSF51182. SSF51182. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P59285-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRTLMIEPLT KEAFAQFGDV IETDGSDHFM INNGSTMRFH KLATVETAEP    50
    EDKAIISIFR ADAQDMPLTV RMLERHPLGS QAFIPLLGNP FLIVVAPVGD 100
    APVSGLVRAF RSNGRQGVNY HRGVWHHPVL TIEKRDDFLV VDRSGSGNNC 150
    DEHYFTEEQM LILNPHQ 167
    Length:167
    Mass (Da):18,768
    Last modified:February 12, 2003 - v1
    Checksum:i670B9A0AF8A8B1D3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN69868.1.
    RefSeqiNP_746404.1. NC_002947.3.

    Genome annotation databases

    EnsemblBacteriaiAAN69868; AAN69868; PP_4288.
    GeneIDi1041802.
    KEGGippu:PP_4288.
    PATRICi19947234. VBIPsePut30601_4560.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN69868.1 .
    RefSeqi NP_746404.1. NC_002947.3.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2BDR X-ray 1.60 A/B 1-167 [» ]
    ProteinModelPortali P59285.
    SMRi P59285. Positions 1-166.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 160488.PP_4288.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAN69868 ; AAN69868 ; PP_4288 .
    GeneIDi 1041802.
    KEGGi ppu:PP_4288.
    PATRICi 19947234. VBIPsePut30601_4560.

    Phylogenomic databases

    eggNOGi COG3194.
    HOGENOMi HOG000256169.
    KOi K01483.
    OMAi NCDIFQF.
    OrthoDBi EOG6JX7JB.

    Enzyme and pathway databases

    UniPathwayi UPA00395 .
    BioCyci PPUT160488:GIXO-4368-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P59285.

    Family and domain databases

    Gene3Di 2.60.120.480. 1 hit.
    HAMAPi MF_00616. Ureidogly_lyase.
    InterProi IPR011051. RmlC_Cupin.
    IPR007247. Ureidogly_hydro.
    IPR023525. Ureidogly_hydro_bac.
    IPR024060. Ureidoglycolate_hydrolase_dom.
    [Graphical view ]
    PANTHERi PTHR21221. PTHR21221. 1 hit.
    Pfami PF04115. Ureidogly_hydro. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF017306. Ureidogly_hydro. 1 hit.
    SUPFAMi SSF51182. SSF51182. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KT2440.
    2. "Crystal structure of the putative ureidoglycolate hydrolase pp4288 from Pseudomonas putida, Northeast structural genomics target Ppr49."
      Northeast structural genomics consortium (NESG)
      Submitted (NOV-2005) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS), SUBUNIT.

    Entry informationi

    Entry nameiALLA_PSEPK
    AccessioniPrimary (citable) accession number: P59285
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 12, 2003
    Last sequence update: February 12, 2003
    Last modified: October 1, 2014
    This is version 79 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3