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Protein

Ureidoglycolate lyase

Gene

allA

Organism
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.UniRule annotation

Catalytic activityi

(S)-ureidoglycolate = glyoxylate + urea.UniRule annotation

Cofactori

Ni2+UniRule annotation

Pathwayi: (S)-allantoin degradation

This protein is involved in the pathway (S)-allantoin degradation, which is part of Nitrogen metabolism.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway (S)-allantoin degradation and in Nitrogen metabolism.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Purine metabolism

Enzyme and pathway databases

UniPathwayiUPA00395.

Names & Taxonomyi

Protein namesi
Recommended name:
Ureidoglycolate lyaseUniRule annotation (EC:4.3.2.3UniRule annotation)
Alternative name(s):
UreidoglycolataseUniRule annotation
Gene namesi
Name:allAUniRule annotation
Ordered Locus Names:PP_4288
OrganismiPseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000556 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001205511 – 167Ureidoglycolate lyaseAdd BLAST167

Interactioni

Subunit structurei

Homodimer.UniRule annotation1 Publication

Protein-protein interaction databases

STRINGi160488.PP_4288.

Structurei

Secondary structure

1167
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 8Combined sources3
Helixi11 – 14Combined sources4
Turni15 – 17Combined sources3
Beta strandi18 – 21Combined sources4
Beta strandi29 – 31Combined sources3
Turni32 – 35Combined sources4
Beta strandi36 – 45Combined sources10
Beta strandi47 – 49Combined sources3
Beta strandi53 – 62Combined sources10
Beta strandi66 – 70Combined sources5
Beta strandi72 – 75Combined sources4
Beta strandi81 – 87Combined sources7
Beta strandi91 – 96Combined sources6
Beta strandi98 – 101Combined sources4
Helixi104 – 106Combined sources3
Beta strandi108 – 112Combined sources5
Beta strandi117 – 120Combined sources4
Beta strandi130 – 144Combined sources15
Beta strandi151 – 154Combined sources4
Helixi157 – 159Combined sources3
Beta strandi161 – 163Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BDRX-ray1.60A/B1-167[»]
ProteinModelPortaliP59285.
SMRiP59285.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP59285.

Family & Domainsi

Sequence similaritiesi

Belongs to the ureidoglycolate lyase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z2U. Bacteria.
COG3194. LUCA.
HOGENOMiHOG000256169.
KOiK01483.
OMAiNCDIFQF.

Family and domain databases

Gene3Di2.60.120.480. 1 hit.
HAMAPiMF_00616. Ureidogly_lyase. 1 hit.
InterProiIPR011051. RmlC_Cupin.
IPR007247. Ureidogly_lyase.
IPR023525. Ureidogly_lyase_bac.
IPR024060. Ureidoglycolate_lyase_dom.
[Graphical view]
PANTHERiPTHR21221. PTHR21221. 1 hit.
PfamiPF04115. Ureidogly_lyase. 1 hit.
[Graphical view]
PIRSFiPIRSF017306. Ureidogly_hydro. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

P59285-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTLMIEPLT KEAFAQFGDV IETDGSDHFM INNGSTMRFH KLATVETAEP
60 70 80 90 100
EDKAIISIFR ADAQDMPLTV RMLERHPLGS QAFIPLLGNP FLIVVAPVGD
110 120 130 140 150
APVSGLVRAF RSNGRQGVNY HRGVWHHPVL TIEKRDDFLV VDRSGSGNNC
160
DEHYFTEEQM LILNPHQ
Length:167
Mass (Da):18,768
Last modified:February 12, 2003 - v1
Checksum:i670B9A0AF8A8B1D3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69868.1.
RefSeqiNP_746404.1. NC_002947.4.
WP_003254333.1. NC_002947.4.

Genome annotation databases

GeneIDi1041802.
KEGGippu:PP_4288.
PATRICi19947234. VBIPsePut30601_4560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69868.1.
RefSeqiNP_746404.1. NC_002947.4.
WP_003254333.1. NC_002947.4.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BDRX-ray1.60A/B1-167[»]
ProteinModelPortaliP59285.
SMRiP59285.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi160488.PP_4288.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1041802.
KEGGippu:PP_4288.
PATRICi19947234. VBIPsePut30601_4560.

Phylogenomic databases

eggNOGiENOG4108Z2U. Bacteria.
COG3194. LUCA.
HOGENOMiHOG000256169.
KOiK01483.
OMAiNCDIFQF.

Enzyme and pathway databases

UniPathwayiUPA00395.

Miscellaneous databases

EvolutionaryTraceiP59285.

Family and domain databases

Gene3Di2.60.120.480. 1 hit.
HAMAPiMF_00616. Ureidogly_lyase. 1 hit.
InterProiIPR011051. RmlC_Cupin.
IPR007247. Ureidogly_lyase.
IPR023525. Ureidogly_lyase_bac.
IPR024060. Ureidoglycolate_lyase_dom.
[Graphical view]
PANTHERiPTHR21221. PTHR21221. 1 hit.
PfamiPF04115. Ureidogly_lyase. 1 hit.
[Graphical view]
PIRSFiPIRSF017306. Ureidogly_hydro. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiALLA_PSEPK
AccessioniPrimary (citable) accession number: P59285
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: February 12, 2003
Last modified: November 2, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.