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P59285

- ALLA_PSEPK

UniProt

P59285 - ALLA_PSEPK

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Protein

Ureidoglycolate lyase

Gene

allA

Organism
Pseudomonas putida (strain KT2440)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.UniRule annotation

Catalytic activityi

(S)-ureidoglycolate = glyoxylate + urea.UniRule annotation

Cofactori

Ni2+UniRule annotation

Pathwayi

GO - Molecular functioni

  1. ureidoglycolate hydrolase activity Source: InterPro
  2. ureidoglycolate lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. allantoin catabolic process Source: UniProtKB-UniPathway
  2. purine nucleobase metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Purine metabolism

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-4368-MONOMER.
UniPathwayiUPA00395.

Names & Taxonomyi

Protein namesi
Recommended name:
Ureidoglycolate lyaseUniRule annotation (EC:4.3.2.3UniRule annotation)
Alternative name(s):
UreidoglycolataseUniRule annotation
Gene namesi
Name:allAUniRule annotation
Ordered Locus Names:PP_4288
OrganismiPseudomonas putida (strain KT2440)
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000556: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 167167Ureidoglycolate lyasePRO_0000120551Add
BLAST

Interactioni

Subunit structurei

Homodimer.1 PublicationUniRule annotation

Protein-protein interaction databases

STRINGi160488.PP_4288.

Structurei

Secondary structure

1
167
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 83Combined sources
Helixi11 – 144Combined sources
Turni15 – 173Combined sources
Beta strandi18 – 214Combined sources
Beta strandi29 – 313Combined sources
Turni32 – 354Combined sources
Beta strandi36 – 4510Combined sources
Beta strandi47 – 493Combined sources
Beta strandi53 – 6210Combined sources
Beta strandi66 – 705Combined sources
Beta strandi72 – 754Combined sources
Beta strandi81 – 877Combined sources
Beta strandi91 – 966Combined sources
Beta strandi98 – 1014Combined sources
Helixi104 – 1063Combined sources
Beta strandi108 – 1125Combined sources
Beta strandi117 – 1204Combined sources
Beta strandi130 – 14415Combined sources
Beta strandi151 – 1544Combined sources
Helixi157 – 1593Combined sources
Beta strandi161 – 1633Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BDRX-ray1.60A/B1-167[»]
ProteinModelPortaliP59285.
SMRiP59285. Positions 1-166.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP59285.

Family & Domainsi

Sequence similaritiesi

Belongs to the ureidoglycolate lyase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG3194.
HOGENOMiHOG000256169.
KOiK01483.
OMAiNCDIFQF.
OrthoDBiEOG6JX7JB.

Family and domain databases

Gene3Di2.60.120.480. 1 hit.
HAMAPiMF_00616. Ureidogly_lyase.
InterProiIPR011051. RmlC_Cupin.
IPR007247. Ureidogly_hydro.
IPR023525. Ureidogly_hydro_bac.
IPR024060. Ureidoglycolate_hydrolase_dom.
[Graphical view]
PANTHERiPTHR21221. PTHR21221. 1 hit.
PfamiPF04115. Ureidogly_hydro. 1 hit.
[Graphical view]
PIRSFiPIRSF017306. Ureidogly_hydro. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

P59285-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRTLMIEPLT KEAFAQFGDV IETDGSDHFM INNGSTMRFH KLATVETAEP
60 70 80 90 100
EDKAIISIFR ADAQDMPLTV RMLERHPLGS QAFIPLLGNP FLIVVAPVGD
110 120 130 140 150
APVSGLVRAF RSNGRQGVNY HRGVWHHPVL TIEKRDDFLV VDRSGSGNNC
160
DEHYFTEEQM LILNPHQ
Length:167
Mass (Da):18,768
Last modified:February 12, 2003 - v1
Checksum:i670B9A0AF8A8B1D3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69868.1.
RefSeqiNP_746404.1. NC_002947.3.

Genome annotation databases

EnsemblBacteriaiAAN69868; AAN69868; PP_4288.
GeneIDi1041802.
KEGGippu:PP_4288.
PATRICi19947234. VBIPsePut30601_4560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69868.1 .
RefSeqi NP_746404.1. NC_002947.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2BDR X-ray 1.60 A/B 1-167 [» ]
ProteinModelPortali P59285.
SMRi P59285. Positions 1-166.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 160488.PP_4288.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN69868 ; AAN69868 ; PP_4288 .
GeneIDi 1041802.
KEGGi ppu:PP_4288.
PATRICi 19947234. VBIPsePut30601_4560.

Phylogenomic databases

eggNOGi COG3194.
HOGENOMi HOG000256169.
KOi K01483.
OMAi NCDIFQF.
OrthoDBi EOG6JX7JB.

Enzyme and pathway databases

UniPathwayi UPA00395 .
BioCyci PPUT160488:GIXO-4368-MONOMER.

Miscellaneous databases

EvolutionaryTracei P59285.

Family and domain databases

Gene3Di 2.60.120.480. 1 hit.
HAMAPi MF_00616. Ureidogly_lyase.
InterProi IPR011051. RmlC_Cupin.
IPR007247. Ureidogly_hydro.
IPR023525. Ureidogly_hydro_bac.
IPR024060. Ureidoglycolate_hydrolase_dom.
[Graphical view ]
PANTHERi PTHR21221. PTHR21221. 1 hit.
Pfami PF04115. Ureidogly_hydro. 1 hit.
[Graphical view ]
PIRSFi PIRSF017306. Ureidogly_hydro. 1 hit.
SUPFAMi SSF51182. SSF51182. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KT2440.
  2. "Crystal structure of the putative ureidoglycolate hydrolase pp4288 from Pseudomonas putida, Northeast structural genomics target Ppr49."
    Northeast structural genomics consortium (NESG)
    Submitted (NOV-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS), SUBUNIT.

Entry informationi

Entry nameiALLA_PSEPK
AccessioniPrimary (citable) accession number: P59285
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: February 12, 2003
Last modified: November 26, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3