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Protein

Uncharacterized Nudix hydrolase YfcD

Gene

yfcD

Organism
Shigella flexneri
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi88MagnesiumBy similarity1
Metal bindingi92MagnesiumBy similarity1

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
LigandMagnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized Nudix hydrolase YfcD (EC:3.6.-.-)
Gene namesi
Name:yfcD
Ordered Locus Names:SF2375, S2510
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000570821 – 180Uncharacterized Nudix hydrolase YfcDAdd BLAST180

Structurei

3D structure databases

ProteinModelPortaliP59196
SMRiP59196
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 163Nudix hydrolasePROSITE-ProRule annotationAdd BLAST129

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi72 – 94Nudix boxAdd BLAST23

Sequence similaritiesi

Belongs to the Nudix hydrolase family.Curated

Phylogenomic databases

eggNOGiENOG4105PTV Bacteria
ENOG410ZCV3 LUCA
HOGENOMiHOG000274108
OMAiPGYWDVA

Family and domain databases

InterProiView protein in InterPro
IPR015797 NUDIX_hydrolase-like_dom_sf
IPR000086 NUDIX_hydrolase_dom
IPR024195 NUDIX_hydrolase_YfcD_pred
PfamiView protein in Pfam
PF00293 NUDIX, 1 hit
PIRSFiPIRSF017340 Nudix_hydro, 1 hit
SUPFAMiSSF55811 SSF55811, 1 hit
PROSITEiView protein in PROSITE
PS51462 NUDIX, 1 hit

Sequencei

Sequence statusi: Complete.

P59196-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQRRLASTE WVDIVNEENE VIAQASREQM RAQCLRHRAT YIVVHDGMGK
60 70 80 90 100
ILVQRRTETK DFLPGMLDAT AGGVVQADEQ LLESARREAE EELGIAGVPF
110 120 130 140 150
AEHGQFYFED KNCRVWGALF SCVSHGPFAL QEDEVSGVCW LTPEEITARC
160 170 180
DEFTPDSLKA LALWMKRNAK NEAVETETAE
Length:180
Mass (Da):20,304
Last modified:January 10, 2003 - v1
Checksum:i83FC88B5BC73FF8B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA Translation: AAN43888.1
AE014073 Genomic DNA Translation: AAP17706.1
RefSeqiNP_708181.1, NC_004337.2
WP_000437938.1, NZ_MTPK01000007.1

Genome annotation databases

EnsemblBacteriaiAAN43888; AAN43888; SF2375
AAP17706; AAP17706; S2510
GeneIDi1026560
KEGGisfl:SF2375
sfx:S2510
PATRICifig|198214.7.peg.2842

Similar proteinsi

Entry informationi

Entry nameiYFCD_SHIFL
AccessioniPrimary (citable) accession number: P59196
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2003
Last sequence update: January 10, 2003
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health