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Protein

UPF0184 protein C9orf16 homolog

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0184 protein C9orf16 homolog
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:1920987. 1110008P14Rik.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8383UPF0184 protein C9orf16 homologPRO_0000195162Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei82 – 821PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP58686.
PRIDEiP58686.

PTM databases

PhosphoSiteiP58686.

Expressioni

Gene expression databases

BgeeiP58686.
CleanExiMM_1110008P14RIK.
GenevisibleiP58686. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038970.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili25 – 7450Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0184 (EST00098) family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG321577.
GeneTreeiENSGT00390000001761.
HOGENOMiHOG000231684.
HOVERGENiHBG050958.
InParanoidiP58686.
OMAiELMESNR.
OrthoDBiEOG7SV0ZQ.
PhylomeDBiP58686.
TreeFamiTF324640.

Family and domain databases

InterProiIPR022788. UPF0184.
IPR005374. UPF0184_eukaryota.
[Graphical view]
PfamiPF03670. UPF0184. 1 hit.
[Graphical view]
ProDomiPD479232. UPF0184. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P58686-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGPNGDLGM PVDAGTEGEN DSFGEAEYAA INSMLDQINS CLDHLEEKND
60 70 80
HLHARLQELL ESNRQTRLEF QQQLGEAPGD ASP
Length:83
Mass (Da):9,055
Last modified:January 31, 2002 - v1
Checksum:i4D6D5BA98B72D36D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003598 mRNA. No translation available.
BC024615 mRNA. Translation: AAH24615.1.
BC049639 mRNA. Translation: AAH49639.1.
CCDSiCCDS38103.1.
RefSeqiNP_932118.1. NM_198001.2.
UniGeneiMm.27608.

Genome annotation databases

EnsembliENSMUST00000048792; ENSMUSP00000038970; ENSMUSG00000039195.
GeneIDi73737.
KEGGimmu:73737.
UCSCiuc008jfk.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003598 mRNA. No translation available.
BC024615 mRNA. Translation: AAH24615.1.
BC049639 mRNA. Translation: AAH49639.1.
CCDSiCCDS38103.1.
RefSeqiNP_932118.1. NM_198001.2.
UniGeneiMm.27608.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038970.

PTM databases

PhosphoSiteiP58686.

Proteomic databases

MaxQBiP58686.
PRIDEiP58686.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000048792; ENSMUSP00000038970; ENSMUSG00000039195.
GeneIDi73737.
KEGGimmu:73737.
UCSCiuc008jfk.2. mouse.

Organism-specific databases

MGIiMGI:1920987. 1110008P14Rik.

Phylogenomic databases

eggNOGiNOG321577.
GeneTreeiENSGT00390000001761.
HOGENOMiHOG000231684.
HOVERGENiHBG050958.
InParanoidiP58686.
OMAiELMESNR.
OrthoDBiEOG7SV0ZQ.
PhylomeDBiP58686.
TreeFamiTF324640.

Miscellaneous databases

NextBioi338943.
PROiP58686.

Gene expression databases

BgeeiP58686.
CleanExiMM_1110008P14RIK.
GenevisibleiP58686. MM.

Family and domain databases

InterProiIPR022788. UPF0184.
IPR005374. UPF0184_eukaryota.
[Graphical view]
PfamiPF03670. UPF0184. 1 hit.
[Graphical view]
ProDomiPD479232. UPF0184. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain and Mammary gland.

Entry informationi

Entry nameiCI016_MOUSE
AccessioniPrimary (citable) accession number: P58686
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 31, 2002
Last sequence update: January 31, 2002
Last modified: July 22, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.