P58397 (ATS12_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 121.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: A disintegrin and metalloproteinase with thrombospondin motifs 12 Short name=ADAM-TS 12 Short name=ADAM-TS12 Short name=ADAMTS-12 EC=3.4.24.- | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1594 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Metalloprotease that may play a role in the degradation of COMP. Cleaves also alpha-2 macroglobulin and aggregan. Has anti-tumorigenic properties. Ref.5 Ref.6 Ref.7 |
| Cofactor | Binds 1 zinc ion per subunit By similarity. |
| Enzyme regulation | Inhibited by alpha-2 macroglobulin. Ref.7 |
| Subunit structure | Interacts with COMP. Ref.5 |
| Subcellular location | Secreted › extracellular space › extracellular matrix By similarity. |
| Tissue specificity | Expressed in skeletal muscle and fat. Detected at significant levels in fetal lung. Widely expressed in gastric carcinomas and in cancer cells of diverse origin. Ref.1 Ref.5 |
| Induction | By IFN-alpha and by IL1B/interleukin-1 beta. Up-regulated in articular cartilage and synovium from arthritis patients. Up-regulared in chondrocytes. Ref.5 Ref.7 |
| Domain | The spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellular matrix By similarity. The C-terminal four TSP1-like repeats are necessary and sufficient for binding COMP. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme. |
| Post-translational modification | The precursor is cleaved by a furin endopeptidase. Subjected to an intracellular maturation process yielding a 120 kDa N-terminal fragment containing the metalloproteinase, disintegrin, one TSP type-1 and the Cys-rich domains and a 83 kDa C-terminal fragment containing the spacer 2 and four TSP type-1 domains. Glycosylated. Can be O-fucosylated by POFUT2 on a serine or a threonine residue found within the consensus sequence C1-X(2)-(S/T)-C2-G of the TSP type-1 repeat domains where C1 and C2 are the first and second cysteine residue of the repeat, respectively. Fucosylated repeats can then be further glycosylated by the addition of a beta-1,3-glucose residue by the glucosyltransferase, B3GALTL. Fucosylation mediates the efficient secretion of ADAMTS family members. Also can be C-glycosylated with one or two mannose molecules on tryptophan residues within the consensus sequence W-X-X-W of the TPRs, and N-glycosylated. These other glycosylations can also facilitate secretion By similarity. |
| Sequence similarities | Contains 1 disintegrin domain. Contains 1 peptidase M12B domain. Contains 1 PLAC domain. Contains 8 TSP type-1 domains. |
| Biophysicochemical properties | pH dependence: Optimum pH is between 7.5 and 9.5 with COMP for substrate. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Extracellular matrix Secreted |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Signal |
| Ligand | Metal-binding Zinc |
| Molecular function | Hydrolase Metalloprotease Protease |
| PTM | Cleavage on pair of basic residues Disulfide bond Glycoprotein Phosphoprotein Zymogen |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | proteolysis Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | proteinaceous extracellular matrix Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | metalloendopeptidase activity Inferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P58397-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P58397-2) The sequence of this isoform differs from the canonical sequence as follows: 212-229: DSVNISQKQELWREKWER → GIVTHMSSWVEESVLFFW 230-1594: Missing. | ||||||
| Isoform 3 (identifier: P58397-3) The sequence of this isoform differs from the canonical sequence as follows: 630-714: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 25 | 25 | Potential | ||||||||
| Propeptide | 26 – 240 | 215 | By similarity | PRO_0000029186 | |||||||
| Chain | 241 – 1594 | 1354 | A disintegrin and metalloproteinase with thrombospondin motifs 12 | PRO_0000029187 | |||||||
Regions | |||||||||||
| Domain | 246 – 456 | 211 | Peptidase M12B | ||||||||
| Domain | 465 – 544 | 80 | Disintegrin | ||||||||
| Domain | 542 – 597 | 56 | TSP type-1 1 | ||||||||
| Domain | 823 – 883 | 61 | TSP type-1 2 | ||||||||
| Domain | 887 – 943 | 57 | TSP type-1 3 | ||||||||
| Domain | 944 – 997 | 54 | TSP type-1 4 | ||||||||
| Domain | 1313 – 1366 | 54 | TSP type-1 5 | ||||||||
| Domain | 1368 – 1422 | 55 | TSP type-1 6 | ||||||||
| Domain | 1423 – 1471 | 49 | TSP type-1 7 | ||||||||
| Domain | 1472 – 1532 | 61 | TSP type-1 8 | ||||||||
| Domain | 1535 – 1575 | 41 | PLAC | ||||||||
| Region | 701 – 827 | 127 | Spacer 1 | ||||||||
| Region | 997 – 1316 | 320 | Spacer 2 | ||||||||
| Motif | 208 – 213 | 6 | Cysteine switch By similarity | ||||||||
| Compositional bias | 302 – 305 | 4 | Poly-Glu | ||||||||
| Compositional bias | 597 – 700 | 104 | Cys-rich | ||||||||
Sites | |||||||||||
| Active site | 393 | 1 | By similarity | ||||||||
| Metal binding | 208 | 1 | Zinc; in inhibited form By similarity | ||||||||
| Metal binding | 392 | 1 | Zinc; catalytic By similarity | ||||||||
| Metal binding | 396 | 1 | Zinc; catalytic By similarity | ||||||||
| Metal binding | 402 | 1 | Zinc; catalytic By similarity | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 982 | 1 | Phosphothreonine By similarity | ||||||||
| Glycosylation | 105 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 125 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 215 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 485 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 685 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 790 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 952 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1105 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1276 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1301 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1321 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1372 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1379 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1504 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 370 ↔ 451 | By similarity | |||||||||
| Disulfide bond | 409 ↔ 435 | By similarity | |||||||||
| Disulfide bond | 554 ↔ 591 | By similarity | |||||||||
| Disulfide bond | 558 ↔ 596 | By similarity | |||||||||
| Disulfide bond | 569 ↔ 581 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 212 – 229 | 18 | DSVNI…EKWER → GIVTHMSSWVEESVLFFW in isoform 2. | VSP_013141 | |||||||
| Alternative sequence | 230 – 1594 | 1365 | Missing in isoform 2. | VSP_013142 | |||||||
| Alternative sequence | 630 – 714 | 85 | Missing in isoform 3. | VSP_038151 | |||||||
| Natural variant | 110 | 1 | Q → E. Corresponds to variant rs16891862 [ dbSNP | Ensembl ]. | VAR_057074 | |||||||
| Natural variant | 1000 | 1 | R → Q. Corresponds to variant rs13362345 [ dbSNP | Ensembl ]. | VAR_057075 | |||||||
| Natural variant | 1177 | 1 | W → R. Corresponds to variant rs3813474 [ dbSNP | Ensembl ]. | VAR_059761 | |||||||
| Natural variant | 1495 | 1 | T → I. Ref.1 Corresponds to variant rs25754 [ dbSNP | Ensembl ]. | VAR_058972 | |||||||
| Natural variant | 1591 | 1 | S → P. Corresponds to variant rs16891281 [ dbSNP | Ensembl ]. | VAR_059762 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 824 | 1 | Missing in CAC20419. Ref.1 | ||||||||
| Sequence conflict | 1336 | 1 | R → K in CAC20419. Ref.1 | ||||||||
| Sequence conflict | 1341 | 1 | S → T in CAC20419. Ref.1 | ||||||||
| Sequence conflict | 1578 | 1 | H → R in AAI31734. Ref.4 | ||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification, characterization, and intracellular processing of ADAM-TS12, a novel human disintegrin with a complex structural organization involving multiple thrombospondin-1 repeats." Cal S., Argueelles J.M., Fernandez P.L., Lopez-Otin C. J. Biol. Chem. 276:17932-17940(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, VARIANT ILE-1495. Tissue: Fetal lung. |
| [2] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
| [3] | "The DNA sequence and comparative analysis of human chromosome 5." Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S. Rubin E.M.Nature 431:268-274(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). |
| [5] | "ADAMTS-12 associates with and degrades cartilage oligomeric matrix protein." Liu C.-J., Kong W., Xu K., Luan Y., Ilalov K., Sehgal B., Yu S., Howell R.D., Di Cesare P.E. J. Biol. Chem. 281:15800-15808(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH COMP, PH DEPENDENCE, TISSUE SPECIFICITY, INDUCTION. |
| [6] | "The ADAMTS12 metalloproteinase exhibits anti-tumorigenic properties through modulation of the Ras-dependent ERK signalling pathway." Llamazares M., Obaya A.J., Moncada-Pazos A., Heljasvaara R., Espada J., Lopez-Otin C., Cal S. J. Cell Sci. 120:3544-3552(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [7] | "Inhibition of ADAMTS-7 and ADAMTS-12 degradation of cartilage oligomeric matrix protein by alpha-2-macroglobulin." Luan Y., Kong L., Howell D.R., Ilalov K., Fajardo M., Bai X.-H., Di Cesare P.E., Goldring M.B., Abramson S.B., Liu C.-J. Osteoarthritis Cartilage 16:1413-1420(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, ENZYME REGULATION, INDUCTION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AJ250725 mRNA. Translation: CAC20419.1. AY358745 mRNA. Translation: AAQ89105.1. AC008880 Genomic DNA. No translation available. AC034232 Genomic DNA. No translation available. AC109491 Genomic DNA. No translation available. AC139777 Genomic DNA. No translation available. BC058841 mRNA. Translation: AAH58841.1. BC131733 mRNA. Translation: AAI31734.1. BC139900 mRNA. Translation: AAI39901.1. |
| IPI | IPI00036578. IPI00432310. IPI00944649. |
| RefSeq | NP_112217.2. NM_030955.2. |
| UniGene | Hs.12680. |
3D structure databases | |
| ProteinModelPortal | P58397. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000344847. |
Protein family/group databases | |
| MEROPS | M12.237. |
PTM databases | |
| PhosphoSite | P58397. |
Polymorphism databases | |
| DMDM | 259016182. |
Proteomic databases | |
| PaxDb | P58397. |
| PRIDE | P58397. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000352040; ENSP00000344847; ENSG00000151388. ENST00000504830; ENSP00000422554; ENSG00000151388. |
| GeneID | 81792. |
| KEGG | hsa:81792. |
| UCSC | uc003jia.1. human. uc010iuq.1. human. |
Organism-specific databases | |
| CTD | 81792. |
| GeneCards | GC05M033495. |
| HGNC | HGNC:14605. ADAMTS12. |
| HPA | HPA035973. |
| MIM | 606184. gene. |
| neXtProt | NX_P58397. |
| PharmGKB | PA24538. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG237764. |
| HOGENOM | HOG000015092. |
| HOVERGEN | HBG050620. |
| InParanoid | P58397. |
| KO | K08626. |
| OMA | LLCTKDK. |
| OrthoDB | EOG4XPQF0. |
| PhylomeDB | P58397. |
Gene expression databases | |
| ArrayExpress | P58397. |
| Bgee | P58397. |
| CleanEx | HS_ADAMTS12. |
| Genevestigator | P58397. |
| GermOnline | ENSG00000151388. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.40.390.10. 2 hits. |
| InterPro | IPR010294. ADAM_spacer1. IPR024079. MetalloPept_cat_dom. IPR001590. Peptidase_M12B. IPR013273. Peptidase_M12B_ADAM-TS. IPR002870. Peptidase_M12B_N. IPR010909. PLAC. IPR000884. Thrombospondin_1_rpt. [Graphical view] |
| Pfam | PF05986. ADAM_spacer1. 1 hit. PF01562. Pep_M12B_propep. 1 hit. PF01421. Reprolysin. 1 hit. PF00090. TSP_1. 8 hits. [Graphical view] |
| PRINTS | PR01857. ADAMTSFAMILY. |
| SMART | SM00209. TSP1. 8 hits. [Graphical view] |
| SUPFAM | SSF82895. TSP1. 8 hits. |
| PROSITE | PS50215. ADAM_MEPRO. 1 hit. PS00546. CYSTEINE_SWITCH. False negative. PS00427. DISINTEGRIN_1. False negative. PS50214. DISINTEGRIN_2. False negative. PS50900. PLAC. 1 hit. PS50092. TSP1. 6 hits. PS00142. ZINC_PROTEASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | ADAMTS12. human. |
| GenomeRNAi | 81792. |
| NextBio | 72100. |
| SOURCE | Search... |
Entry information
| Entry name | ATS12_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P58397 Secondary accession number(s): A2RRN9, A5D6V6, Q6UWL3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Peptidase families Classification of peptidase families and list of entries |
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
