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Protein

28S ribosomal protein S21, mitochondrial

Gene

Mrps21

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: MGI
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
28S ribosomal protein S21, mitochondrial
Short name:
MRP-S21
Short name:
S21mt
Gene namesi
Name:Mrps21
Synonyms:Rpms21
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:1913542. Mrps21.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial inner membrane Source: MGI
  2. mitochondrial small ribosomal subunit Source: MGI
  3. mitochondrion Source: MGI
  4. ribosomal subunit Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 878728S ribosomal protein S21, mitochondrialPRO_0000178414Add
BLAST

Proteomic databases

MaxQBiP58059.
PaxDbiP58059.
PRIDEiP58059.

PTM databases

PhosphoSiteiP58059.

Expressioni

Gene expression databases

BgeeiP58059.
CleanExiMM_MRPS21.
ExpressionAtlasiP58059. baseline and differential.
GenevestigatoriP58059.

Interactioni

Subunit structurei

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Protein-protein interaction databases

BioGridi211361. 7 interactions.
STRINGi10090.ENSMUSP00000066990.

Structurei

3D structure databases

ProteinModelPortaliP58059.
SMRiP58059. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S21P family.Curated

Phylogenomic databases

eggNOGiNOG47836.
HOGENOMiHOG000007789.
HOVERGENiHBG047411.
InParanoidiP58059.
KOiK02970.
OMAiMNRKIQF.
OrthoDBiEOG7W9RX2.
PhylomeDBiP58059.
TreeFamiTF313903.

Family and domain databases

InterProiIPR001911. Ribosomal_S21.
[Graphical view]
PfamiPF01165. Ribosomal_S21. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00030. S21p. 1 hit.

Sequencei

Sequence statusi: Complete.

P58059-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKHLKFIAR TVMVQEGNVE GAYRTLNRIL TTDGLTEVIS RRRYYEKPCR
60 70 80
RRQRESYETC RRIYNMEMAR KINFLMRKNR ADPWLGC
Length:87
Mass (Da):10,561
Last modified:May 4, 2001 - v1
Checksum:iD0F4DAF886AA29DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB049956 mRNA. Translation: BAB41009.1.
AK002588 mRNA. Translation: BAC24999.1.
AK003462 mRNA. Translation: BAC25036.1.
AK003602 mRNA. Translation: BAC25044.1.
AK007662 mRNA. Translation: BAC25181.1.
AK007838 mRNA. Translation: BAC25189.1.
AK008265 mRNA. Translation: BAC25210.1.
AK008293 mRNA. Translation: BAC25213.1.
AK009049 mRNA. Translation: BAC25237.1.
AK009703 mRNA. Translation: BAC25267.1.
BC027546 mRNA. Translation: AAH27546.1.
CCDSiCCDS38550.1.
RefSeqiNP_510964.1. NM_078479.3.
XP_006501942.1. XM_006501879.1.
UniGeneiMm.24108.

Genome annotation databases

EnsembliENSMUST00000067298; ENSMUSP00000066990; ENSMUSG00000054312.
ENSMUST00000072587; ENSMUSP00000130403; ENSMUSG00000054312.
GeneIDi66292.
KEGGimmu:66292.
UCSCiuc008qli.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB049956 mRNA. Translation: BAB41009.1.
AK002588 mRNA. Translation: BAC24999.1.
AK003462 mRNA. Translation: BAC25036.1.
AK003602 mRNA. Translation: BAC25044.1.
AK007662 mRNA. Translation: BAC25181.1.
AK007838 mRNA. Translation: BAC25189.1.
AK008265 mRNA. Translation: BAC25210.1.
AK008293 mRNA. Translation: BAC25213.1.
AK009049 mRNA. Translation: BAC25237.1.
AK009703 mRNA. Translation: BAC25267.1.
BC027546 mRNA. Translation: AAH27546.1.
CCDSiCCDS38550.1.
RefSeqiNP_510964.1. NM_078479.3.
XP_006501942.1. XM_006501879.1.
UniGeneiMm.24108.

3D structure databases

ProteinModelPortaliP58059.
SMRiP58059. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi211361. 7 interactions.
STRINGi10090.ENSMUSP00000066990.

PTM databases

PhosphoSiteiP58059.

Proteomic databases

MaxQBiP58059.
PaxDbiP58059.
PRIDEiP58059.

Protocols and materials databases

DNASUi66292.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000067298; ENSMUSP00000066990; ENSMUSG00000054312.
ENSMUST00000072587; ENSMUSP00000130403; ENSMUSG00000054312.
GeneIDi66292.
KEGGimmu:66292.
UCSCiuc008qli.1. mouse.

Organism-specific databases

CTDi54460.
MGIiMGI:1913542. Mrps21.

Phylogenomic databases

eggNOGiNOG47836.
HOGENOMiHOG000007789.
HOVERGENiHBG047411.
InParanoidiP58059.
KOiK02970.
OMAiMNRKIQF.
OrthoDBiEOG7W9RX2.
PhylomeDBiP58059.
TreeFamiTF313903.

Miscellaneous databases

NextBioi321225.
PROiP58059.
SOURCEiSearch...

Gene expression databases

BgeeiP58059.
CleanExiMM_MRPS21.
ExpressionAtlasiP58059. baseline and differential.
GenevestigatoriP58059.

Family and domain databases

InterProiIPR001911. Ribosomal_S21.
[Graphical view]
PfamiPF01165. Ribosomal_S21. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00030. S21p. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28S small subunit."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:33181-33195(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Kidney, Pancreas, Small intestine and Tongue.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Mammary gland.

Entry informationi

Entry nameiRT21_MOUSE
AccessioniPrimary (citable) accession number: P58059
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 4, 2001
Last sequence update: May 4, 2001
Last modified: April 29, 2015
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.